MD15G1219500.v1.1

BURP domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0000559
Physical Location & Seq
Forward (+)
17750818 .. 17753366
2549 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1219500.v1.1.491

Sequence Viewer

Length: 927 bp
ATGGGGTTCCATCTCGGGTACATCTTCGCTCTTCTCACTCTGGCAGTGGTGGCATTGGCAAGCCATGCTGCTCTTCCAGTAGCTCAACTTTACTGGAACTCCGTCCTACCCAACACTCAAATGCCCAAAGCTATCAGTGAACTTCTCCAACCAGCTGAATTCATTATTGAAGATAAGAGCACCCCAGCTGAAGTAGAGAACCCAGATGCCAAGAAAATGTATGCCTATGCAGCAGAGAACCATCAATTCCGTGAAGACCCCAACGCGGCAGCTCTTGTCTTCTTGGAAAAGAACATACGTCCTGGCACAACAATGAACTGGCCCTACGCTAGAAATACAAACACAGCCACTTTCCTGCCGCGCAGAACTGCCGAATCGATCGCCTTCTCATCTACCAAACTCCCAGAAATCCTTAAGCACTTCTCACTGGAACCATCATCTGTGGAAGCTAACACAATCAAGGAAACAATCCAGGAGTGTGAAGCGCCAGGCATTAAGGGAGAGGAAAAATATTGCGCAACGTCTTTAGAATCAATGATTGATTTCACCACTTCCAAGCTTGGAACAAGTGTTGAAGCCTTGGTATCGACAGAGGAGGAAAAAGAAGCCACCATATTTATGCACAAGTACACAATAATGCCTGGAGTGAAGAAGTTGGAAGGCGAAAAAGCCGTCATGTGTCACAAGCAGAACTATCCTTACGCTGTGTTTTACTGTCATGCAATAAAACAAACAAGAGCTTATATAGTGCCCCTTGTTGGTGCCGATGGGGTGAAAGCTAAAGCAGTAGCAGTCTGCCATATCGATACATCCGAATGGAACCCTAAGCATTTGGCCTTCCAAGTGCTCAAAGTTAAGCCCGGAACCGTTCCCATTTGCCATTTCCTTACCAATGATCATATTGTCTGGGTTCCAAAGTCTATCTGA

Protein Analysis

309

Amino Acids

34.24

Weight (kDa)

6.42

Isoelectric Point (pI)

47.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BURP PF03181 93 - 305 1.3e-85 BURP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000559)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25610
fragaria_vesca FvH4_2g36250 FvH4_2g36250 FvH4_2g36250 FvH4_7g14680
malus_domestica MD04G1018200.v1.1 MD08G1119600.v1.1 MD08G1119700.v1.1 MD08G1119800.v1.1 MD08G1199500.v1.1 MD08G1203300.v1.1 MD15G1098800.v1.1 MD15G1219500.v1.1
prunus_persica Prupe.1G453500_v2.0.a1 Prupe.1G453600_v2.0.a1 Prupe.1G453700_v2.0.a1 Prupe.1G465600_v2.0.a1 Prupe.1G475100_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475400_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475800_v2.0.a1 Prupe.1G475900_v2.0.a1 Prupe.1G476200_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476700_v2.0.a1 Prupe.1G477000_v2.0.a1 Prupe.1G477200_v2.0.a1 Prupe.1G477400_v2.0.a1 Prupe.1G477800_v2.0.a1 Prupe.4G169000_v2.0.a1 Prupe.4G257600_v2.0.a1
pyrus_communis pycom08g16760 pycom14g01650 pycom15g09040 pycom15g09070
rosa_chinensis RchiOBHm_Chr1g0356161 RchiOBHm_Chr1g0356461 RchiOBHm_Chr5g0051031
rosa_laevigata RLG00000010869 RLG00000028095 RLG00000028100 RLG00000034755
rosa_multiflora Rmu_co8314191.1_g000001 Rmu_co8337567.1_g000001 Rmu_sc0000281.1_g000019 Rmu_sc0000446.1_g000034 Rmu_sc0000782.1_g000019 Rmu_sc0001809.1_g000027 Rmu_sc0013768.1_g000023
rosa_roxburghii Rroxscaffold_1G00029620 Rroxscaffold_4G00299510 Rroxscaffold_4G00299720 Rroxscaffold_7G00162480
rosa_rugosa Rorug01G0249900 Rorug01G0250000 Rorug05G0572100 Rorug06G0342600
rosa_samantha Rh1AG262800 Rh1AG263300 Rh1AG263600 Rh1BG231500 Rh1CG246400 Rh1CG246900 Rh1DG259200 Rh5AG337800 Rh5BG347500 Rh5CG374800 Rh5DG360600 Rh6BG447100 Rh6CG468100 Rh6DG454900
rosa_wichuraiana Rw1G023250 Rw1G023300 Rw5G031920 Rw6G039620 Rw7G036720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 517
AccB1I GGYRCC 1 cut(s) 761
AccII CGCG 2 cut(s) 266, 361
AciI CCGC 2 cut(s) 266, 359
AcsI RAATTY 1 cut(s) 158
AcuI CTGAAG 1 cut(s) 210
AfaI GTAC 2 cut(s) 20, 629
AfiI CCNNNNNNNGG 2 cut(s) 265, 758
AflII CTTAAG 1 cut(s) 413
AgsI TTSAA 2 cut(s) 170, 575
AjnI CCWGG 4 cut(s) 301, 471, 487, 640
AluBI AGCT 9 cut(s) 83, 131, 155, 188, 272, 449, 559, 740, 779
AluI AGCT 9 cut(s) 83, 131, 155, 188, 272, 449, 559, 740, 779
Alw21I GWGCWC 2 cut(s) 182, 849
Ama87I CYCGRG 1 cut(s) 14
AoxI GGCC 2 cut(s) 320, 834
ApeKI GCWGC 3 cut(s) 68, 230, 269
ApoI RAATTY 1 cut(s) 158
ArsI GACNNNNNNTTYG 2 cut(s) 657, 689
AspLEI GCGC 3 cut(s) 363, 487, 518
AspS9I GGNCC 1 cut(s) 321
AsuC2I CCSGG 1 cut(s) 861
AsuHPI GGTGA 2 cut(s) 538, 784
AvaI CYCGRG 1 cut(s) 14
BaeGI GKGCMC 1 cut(s) 753
BanI GGYRCC 1 cut(s) 761
BbsI GAAGAC 2 cut(s) 261, 271
Bbv12I GWGCWC 2 cut(s) 182, 849
BbvI GCAGC 3 cut(s) 55, 242, 281
BccI CCATC 4 cut(s) 18, 249, 442, 761
BceAI ACGGC 1 cut(s) 656
BciT130I CCWGG 4 cut(s) 303, 473, 489, 642
BclI TGATCA 1 cut(s) 895
BcnI CCSGG 1 cut(s) 861
BfaI CTAG 1 cut(s) 330
BfoI RGCGCY 1 cut(s) 488
BfrI CTTAAG 1 cut(s) 413
BisI GCNGC 5 cut(s) 69, 231, 267, 270, 359
BlsI GCNGC 5 cut(s) 70, 232, 268, 271, 360
Bme1390I CCNGG 5 cut(s) 303, 473, 489, 642, 861
BmeT110I CYCGRG 1 cut(s) 14
BmgT120I GGNCC 1 cut(s) 321
BmiI GGNNCC 6 cut(s) 8, 432, 763, 821, 865, 912
BmrFI CCNGG 5 cut(s) 303, 473, 489, 642, 861
BmsI GCATC 1 cut(s) 196
BpiI GAAGAC 2 cut(s) 261, 271
BpmI CTGGAG 1 cut(s) 663
Bpu10I CCTNAGC 1 cut(s) 825
BpuMI CCSGG 1 cut(s) 861
Bsa29I ATCGAT 2 cut(s) 377, 804
BsaJI CCNNGG 1 cut(s) 579
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bsc4I CCNNNNNNNGG 2 cut(s) 265, 758
Bse1I ACTGG 4 cut(s) 77, 98, 323, 432
BseBI CCWGG 4 cut(s) 303, 473, 489, 642
BseCI ATCGAT 2 cut(s) 377, 804
BseDI CCNNGG 1 cut(s) 579
BseGI GGATG 1 cut(s) 809
BseLI CCNNNNNNNGG 2 cut(s) 265, 758
BseNI ACTGG 4 cut(s) 77, 98, 323, 432
BseRI GAGGAG 1 cut(s) 608
BseSI GKGCMC 1 cut(s) 753
BseXI GCAGC 3 cut(s) 55, 242, 281
BseYI CCCAGC 1 cut(s) 184
Bsh1236I CGCG 2 cut(s) 266, 361
Bsh1285I CGRYCG 1 cut(s) 381
BshFI GGCC 2 cut(s) 322, 836
BshNI GGYRCC 1 cut(s) 761
BshVI ATCGAT 2 cut(s) 377, 804
BsiEI CGRYCG 1 cut(s) 381
BsiHKAI GWGCWC 2 cut(s) 182, 849
BsiHKCI CYCGRG 1 cut(s) 14
BsiSI CCGG 1 cut(s) 861
BslI CCNNNNNNNGG 2 cut(s) 265, 758
BsnI GGCC 2 cut(s) 322, 836
BsoBI CYCGRG 1 cut(s) 14
Bsp1286I GDGCHC 3 cut(s) 182, 753, 849
Bsp143I GATC 2 cut(s) 378, 895
BspACI CCGC 2 cut(s) 266, 359
BspANI GGCC 2 cut(s) 322, 836
BspDI ATCGAT 2 cut(s) 377, 804
BspFNI CGCG 2 cut(s) 266, 361
BspLI GGNNCC 6 cut(s) 8, 432, 763, 821, 865, 912
BspQI GCTCTTC 2 cut(s) 36, 78
BspT107I GGYRCC 1 cut(s) 761
BspTI CTTAAG 1 cut(s) 413
BsrI ACTGG 4 cut(s) 77, 98, 323, 432
BssECI CCNNGG 1 cut(s) 579
BssMI GATC 2 cut(s) 378, 895
BssT1I CCWWGG 1 cut(s) 579
Bst2UI CCWGG 4 cut(s) 303, 473, 489, 642
Bst4CI ACNGT 2 cut(s) 716, 868
Bst6I CTCTTC 2 cut(s) 36, 78
BstAFI CTTAAG 1 cut(s) 413
BstAPI GCANNNNNTGC 1 cut(s) 65
BstC8I GCNNGC 1 cut(s) 61
BstDEI CTNAG 1 cut(s) 825
BstF5I GGATG 1 cut(s) 809
BstFNI CGCG 2 cut(s) 266, 361
BstH2I RGCGCY 1 cut(s) 488
BstHHI GCGC 3 cut(s) 363, 487, 518
BstKTI GATC 2 cut(s) 381, 898
BstMBI GATC 2 cut(s) 378, 895
BstMCI CGRYCG 1 cut(s) 381
BstMWI GCNNNNNNNGC 3 cut(s) 50, 65, 230
BstNI CCWGG 4 cut(s) 303, 473, 489, 642
BstSCI CCNGG 5 cut(s) 301, 471, 487, 640, 859
BstSLI GKGCMC 1 cut(s) 753
BstUI CGCG 2 cut(s) 266, 361
BstV1I GCAGC 3 cut(s) 55, 242, 281
BstV2I GAAGAC 2 cut(s) 261, 271
Bsu15I ATCGAT 2 cut(s) 377, 804
BsuRI GGCC 2 cut(s) 322, 836
BsuTUI ATCGAT 2 cut(s) 377, 804
BtsCI GGATG 1 cut(s) 809
BtsI GCAGTG 1 cut(s) 51
BtsIMutI CAGTG 3 cut(s) 51, 142, 425
Cac8I GCNNGC 1 cut(s) 61
CfoI GCGC 3 cut(s) 363, 487, 518
Cfr13I GGNCC 1 cut(s) 321
ClaI ATCGAT 2 cut(s) 377, 804
Csp6I GTAC 2 cut(s) 19, 628
CviAII CATG 3 cut(s) 65, 676, 719
CviQI GTAC 2 cut(s) 19, 628
DdeI CTNAG 1 cut(s) 825
DpnI GATC 2 cut(s) 380, 897
DpnII GATC 2 cut(s) 378, 895
Eam1104I CTCTTC 2 cut(s) 36, 78
EarI CTCTTC 2 cut(s) 36, 78
Eco130I CCWWGG 1 cut(s) 579
Eco57I CTGAAG 1 cut(s) 210
Eco88I CYCGRG 1 cut(s) 14
EcoRI GAATTC 1 cut(s) 158
EcoRII CCWGG 4 cut(s) 301, 471, 487, 640
EcoT14I CCWWGG 1 cut(s) 579
ErhI CCWWGG 1 cut(s) 579
FaeI CATG 3 cut(s) 68, 679, 722
FatI CATG 3 cut(s) 64, 675, 718
FbaI TGATCA 1 cut(s) 895
Fnu4HI GCNGC 5 cut(s) 69, 231, 267, 270, 359
FokI GGATG 1 cut(s) 796
Fsp4HI GCNGC 5 cut(s) 69, 231, 267, 270, 359
FspBI CTAG 1 cut(s) 330
FspI TGCGCA 1 cut(s) 517
GlaI GCGC 3 cut(s) 362, 486, 517
GluI GCNGC 5 cut(s) 69, 231, 267, 270, 359
GsaI CCCAGC 1 cut(s) 188
GsuI CTGGAG 1 cut(s) 663
HaeII RGCGCY 1 cut(s) 488
HaeIII GGCC 2 cut(s) 322, 836
HapII CCGG 1 cut(s) 861
HhaI GCGC 3 cut(s) 363, 487, 518
Hin1II CATG 3 cut(s) 68, 679, 722
Hin6I GCGC 3 cut(s) 361, 485, 516
HinP1I GCGC 3 cut(s) 361, 485, 516
HindIII AAGCTT 1 cut(s) 557
HinfI GANTC 2 cut(s) 374, 530
HpaII CCGG 1 cut(s) 861
HphI GGTGA 2 cut(s) 538, 784
Hpy166II GTNNAC 2 cut(s) 140, 630
Hpy188I TCNGA 2 cut(s) 814, 926
Hpy8I GTNNAC 2 cut(s) 140, 630
HpyAV CCTTC 3 cut(s) 394, 653, 847
HpyCH4III ACNGT 2 cut(s) 716, 868
HpyCH4IV ACGT 2 cut(s) 298, 521
HpyCH4V TGCA 3 cut(s) 230, 622, 722
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 65, 230
HpyF3I CTNAG 1 cut(s) 825
HpySE526I ACGT 2 cut(s) 298, 521
Hsp92II CATG 3 cut(s) 68, 679, 722
HspAI GCGC 3 cut(s) 361, 485, 516
Ksp22I TGATCA 1 cut(s) 895
Kzo9I GATC 2 cut(s) 378, 895
LguI GCTCTTC 2 cut(s) 36, 78
Lsp1109I GCAGC 3 cut(s) 55, 242, 281
LweI GCATC 1 cut(s) 196
MaeI CTAG 1 cut(s) 330
MaeII ACGT 2 cut(s) 298, 521
MaeIII GTNAC 1 cut(s) 680
MalI GATC 2 cut(s) 380, 897
MboI GATC 2 cut(s) 378, 895
MboII GAAGA 7 cut(s) 16, 23, 65, 182, 266, 271, 661
MhlI GDGCHC 3 cut(s) 182, 753, 849
MluCI AATT 2 cut(s) 158, 245
MmeI TCCRAC 2 cut(s) 172, 636
MnlI CCTC 3 cut(s) 496, 586, 589
MseI TTAA 3 cut(s) 414, 495, 855
MslI CAYNNNNRTG 5 cut(s) 119, 311, 617, 635, 814
MspA1I CMGCKG 2 cut(s) 155, 188
MspCI CTTAAG 1 cut(s) 413
MspI CCGG 1 cut(s) 861
MspR9I CCNGG 5 cut(s) 303, 473, 489, 642, 861
MvaI CCWGG 4 cut(s) 303, 473, 489, 642
MvnI CGCG 2 cut(s) 266, 361
MwoI GCNNNNNNNGC 3 cut(s) 50, 65, 230
NciI CCSGG 1 cut(s) 861
NdeII GATC 2 cut(s) 378, 895
NlaIII CATG 3 cut(s) 68, 679, 722
NlaIV GGNNCC 6 cut(s) 8, 432, 763, 821, 865, 912
NmuCI GTSAC 1 cut(s) 680
NsbI TGCGCA 1 cut(s) 517
PciSI GCTCTTC 2 cut(s) 36, 78
PcsI WCGNNNNNNNCGW 1 cut(s) 810
PfeI GAWTC 2 cut(s) 374, 530
PfoI TCCNGGA 1 cut(s) 471
PkrI GCNGC 5 cut(s) 70, 232, 268, 271, 360
Ple19I CGATCG 1 cut(s) 381
Psp6I CCWGG 4 cut(s) 301, 471, 487, 640
PspFI CCCAGC 1 cut(s) 184
PspGI CCWGG 4 cut(s) 301, 471, 487, 640
PspN4I GGNNCC 6 cut(s) 8, 432, 763, 821, 865, 912
PspPI GGNCC 1 cut(s) 321
PsrI GAACNNNNNNTAC 4 cut(s) 308, 340, 683, 715
PvuI CGATCG 1 cut(s) 381
PvuII CAGCTG 2 cut(s) 155, 188
RsaI GTAC 2 cut(s) 20, 629
RsaNI GTAC 2 cut(s) 19, 628
RseI CAYNNNNRTG 5 cut(s) 119, 311, 617, 635, 814
SapI GCTCTTC 2 cut(s) 36, 78
SaqAI TTAA 3 cut(s) 414, 495, 855
SatI GCNGC 5 cut(s) 69, 231, 267, 270, 359
Sau3AI GATC 2 cut(s) 378, 895
Sau96I GGNCC 1 cut(s) 321
ScrFI CCNGG 5 cut(s) 303, 473, 489, 642, 861
SduI GDGCHC 3 cut(s) 182, 753, 849
SfaNI GCATC 1 cut(s) 196
SmiMI CAYNNNNRTG 5 cut(s) 119, 311, 617, 635, 814
SmlI CTYRAG 1 cut(s) 413
SmoI CTYRAG 1 cut(s) 413
Sse9I AATT 2 cut(s) 158, 245
SsiI CCGC 2 cut(s) 266, 359
SspI AATATT 1 cut(s) 512
SspMI CTAG 1 cut(s) 330
StyD4I CCNGG 5 cut(s) 301, 471, 487, 640, 859
StyI CCWWGG 1 cut(s) 579
TaaI ACNGT 2 cut(s) 716, 868
TaiI ACGT 2 cut(s) 301, 524
TaqI TCGA 3 cut(s) 377, 587, 804
TasI AATT 2 cut(s) 158, 245
TatI WGTACW 1 cut(s) 627
TauI GCSGC 2 cut(s) 269, 361
TfiI GAWTC 2 cut(s) 374, 530
Tru1I TTAA 3 cut(s) 414, 495, 855
Tru9I TTAA 3 cut(s) 414, 495, 855
TscAI CASTG 3 cut(s) 51, 142, 432
TseFI GTSAC 1 cut(s) 680
TseI GCWGC 3 cut(s) 68, 230, 269
Tsp45I GTSAC 1 cut(s) 680
TspDTI ATGAA 2 cut(s) 151, 329
TspGWI ACGGA 2 cut(s) 91, 239
TspRI CASTG 3 cut(s) 51, 142, 432
Vha464I CTTAAG 1 cut(s) 413
XapI RAATTY 1 cut(s) 158
XspI CTAG 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.