Rmu_co8314191.1_g000001

Dehydration-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8314191.1
OG0000559
Physical Location & Seq
Reverse (-)
177 .. 779
603 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8314191.1_g000001.1.cds

Sequence Viewer

Length: 603 bp
atgcgattcttgaaacccatgagtaacaaggtagctcttttgcctcgtcaagttgcaaagtccatacccttttcaagcagcaagttgccagaaattctaacatactttggagtgaaacccaagtcaccggttgcagaaataatgaaaagcacaatcaaagagtgcgaggcaccggccattaaaggtgaagacaagtactgcgcaacatcgttagaatccttgatcgatttcacggtttcacatattggaaagtacgtccaagtttattcaactgaggccgaaaacgaaaacaaacaagactatagcattgagattactggagtccaaagtattggagaaaggtctattgtgtgccataaggagaactatgtttatggtgtgttttactgccacaaattctatggcacaacaagggcttacatggttccattggtgggtgctgatggagttacaaaagccaaagcagtagctatttgccatgttgacaccactgactggaaccctaagcatttggcctttcaaatcctcaaaataaagccaggaaatacaatcccagtctgtcatttcctacacactaccagtcttttgtgggttcctatgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BURP

Protein Analysis

200

Amino Acids

22.39

Weight (kDa)

8.8

Isoelectric Point (pI)

48.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000559)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25610
fragaria_vesca FvH4_2g36250 FvH4_2g36250 FvH4_2g36250 FvH4_7g14680
malus_domestica MD04G1018200.v1.1 MD08G1119600.v1.1 MD08G1119700.v1.1 MD08G1119800.v1.1 MD08G1199500.v1.1 MD08G1203300.v1.1 MD15G1098800.v1.1 MD15G1219500.v1.1
prunus_persica Prupe.1G453500_v2.0.a1 Prupe.1G453600_v2.0.a1 Prupe.1G453700_v2.0.a1 Prupe.1G465600_v2.0.a1 Prupe.1G475100_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475400_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475800_v2.0.a1 Prupe.1G475900_v2.0.a1 Prupe.1G476200_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476700_v2.0.a1 Prupe.1G477000_v2.0.a1 Prupe.1G477200_v2.0.a1 Prupe.1G477400_v2.0.a1 Prupe.1G477800_v2.0.a1 Prupe.4G169000_v2.0.a1 Prupe.4G257600_v2.0.a1
pyrus_communis pycom08g16760 pycom14g01650 pycom15g09040 pycom15g09070
rosa_chinensis RchiOBHm_Chr1g0356161 RchiOBHm_Chr1g0356461 RchiOBHm_Chr5g0051031
rosa_laevigata RLG00000010869 RLG00000028095 RLG00000028100 RLG00000034755
rosa_multiflora Rmu_co8314191.1_g000001 Rmu_co8337567.1_g000001 Rmu_sc0000281.1_g000019 Rmu_sc0000446.1_g000034 Rmu_sc0000782.1_g000019 Rmu_sc0001809.1_g000027 Rmu_sc0013768.1_g000023
rosa_roxburghii Rroxscaffold_1G00029620 Rroxscaffold_4G00299510 Rroxscaffold_4G00299720 Rroxscaffold_7G00162480
rosa_rugosa Rorug01G0249900 Rorug01G0250000 Rorug05G0572100 Rorug06G0342600
rosa_samantha Rh1AG262800 Rh1AG263300 Rh1AG263600 Rh1BG231500 Rh1CG246400 Rh1CG246900 Rh1DG259200 Rh5AG337800 Rh5BG347500 Rh5CG374800 Rh5DG360600 Rh6BG447100 Rh6CG468100 Rh6DG454900
rosa_wichuraiana Rw1G023250 Rw1G023300 Rw5G031920 Rw6G039620 Rw7G036720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 202
AccB1I GGYRCC 1 cut(s) 169
AccB7I CCANNNNNTGG 1 cut(s) 495
AcoI YGGCCR 1 cut(s) 174
AcsI RAATTY 2 cut(s) 93, 395
AfaI GTAC 2 cut(s) 197, 254
AfiI CCNNNNNNNGG 2 cut(s) 434, 495
AgeI ACCGGT 1 cut(s) 127
AgsI TTSAA 4 cut(s) 13, 75, 270, 521
AjnI CCWGG 1 cut(s) 538
AluBI AGCT 2 cut(s) 35, 470
AluI AGCT 2 cut(s) 35, 470
AoxI GGCC 3 cut(s) 174, 276, 513
ApeKI GCWGC 1 cut(s) 78
ApoI RAATTY 2 cut(s) 93, 395
AsiGI ACCGGT 1 cut(s) 127
AspLEI GCGC 1 cut(s) 203
AsuHPI GGTGA 2 cut(s) 117, 197
BanI GGYRCC 1 cut(s) 169
BbsI GAAGAC 1 cut(s) 195
BbvI GCAGC 1 cut(s) 90
BccI CCATC 1 cut(s) 437
BciT130I CCWGG 1 cut(s) 540
BfmI CTRYAG 1 cut(s) 301
BisI GCNGC 1 cut(s) 79
BlsI GCNGC 1 cut(s) 80
BmcAI AGTACT 1 cut(s) 197
Bme1390I CCNGG 1 cut(s) 540
BmiI GGNNCC 4 cut(s) 171, 426, 500, 594
BmrFI CCNGG 1 cut(s) 540
BmrI ACTGGG 1 cut(s) 548
BmuI ACTGGG 1 cut(s) 548
BpiI GAAGAC 1 cut(s) 195
BpmI CTGGAG 1 cut(s) 339
Bpu10I CCTNAGC 1 cut(s) 504
Bsa29I ATCGAT 1 cut(s) 225
BsaWI WCCGGW 1 cut(s) 127
Bsc4I CCNNNNNNNGG 2 cut(s) 434, 495
Bse118I RCCGGY 2 cut(s) 127, 172
Bse1I ACTGG 4 cut(s) 322, 500, 554, 579
BseBI CCWGG 1 cut(s) 540
BseCI ATCGAT 1 cut(s) 225
BseLI CCNNNNNNNGG 2 cut(s) 434, 495
BseMII CTCAG 1 cut(s) 264
BseNI ACTGG 4 cut(s) 322, 500, 554, 579
BseXI GCAGC 1 cut(s) 90
BshFI GGCC 3 cut(s) 176, 278, 515
BshNI GGYRCC 1 cut(s) 169
BshTI ACCGGT 1 cut(s) 127
BshVI ATCGAT 1 cut(s) 225
BsiSI CCGG 2 cut(s) 128, 173
BslI CCNNNNNNNGG 2 cut(s) 434, 495
BsnI GGCC 3 cut(s) 176, 278, 515
Bsp143I GATC 1 cut(s) 222
BspANI GGCC 3 cut(s) 176, 278, 515
BspCNI CTCAG 1 cut(s) 265
BspDI ATCGAT 1 cut(s) 225
BspLI GGNNCC 4 cut(s) 171, 426, 500, 594
BspT107I GGYRCC 1 cut(s) 169
BsrFI RCCGGY 2 cut(s) 127, 172
BsrI ACTGG 4 cut(s) 322, 500, 554, 579
BssAI RCCGGY 2 cut(s) 127, 172
BssMI GATC 1 cut(s) 222
Bst2UI CCWGG 1 cut(s) 540
Bst4CI ACNGT 1 cut(s) 235
BstDEI CTNAG 2 cut(s) 273, 504
BstHHI GCGC 1 cut(s) 203
BstKTI GATC 1 cut(s) 225
BstMBI GATC 1 cut(s) 222
BstNI CCWGG 1 cut(s) 540
BstSCI CCNGG 1 cut(s) 538
BstSFI CTRYAG 1 cut(s) 301
BstV1I GCAGC 1 cut(s) 90
BstV2I GAAGAC 1 cut(s) 195
BstXI CCANNNNNNTGG 1 cut(s) 332
Bsu15I ATCGAT 1 cut(s) 225
BsuRI GGCC 3 cut(s) 176, 278, 515
BsuTUI ATCGAT 1 cut(s) 225
BtsIMutI CAGTG 1 cut(s) 489
CfoI GCGC 1 cut(s) 203
Cfr10I RCCGGY 2 cut(s) 127, 172
ClaI ATCGAT 1 cut(s) 225
Csp6I GTAC 2 cut(s) 196, 253
CspAI ACCGGT 1 cut(s) 127
CviAII CATG 3 cut(s) 19, 421, 479
CviJI RGCY 8 cut(s) 35, 176, 278, 416, 458, 470, 515, 538
CviKI_1 RGCY 8 cut(s) 35, 176, 278, 416, 458, 470, 515, 538
CviQI GTAC 2 cut(s) 196, 253
DdeI CTNAG 2 cut(s) 273, 504
DpnI GATC 1 cut(s) 224
DpnII GATC 1 cut(s) 222
EaeI YGGCCR 1 cut(s) 174
EcoRII CCWGG 1 cut(s) 538
FaeI CATG 3 cut(s) 22, 424, 482
FatI CATG 3 cut(s) 18, 420, 478
Fnu4HI GCNGC 1 cut(s) 79
Fsp4HI GCNGC 1 cut(s) 79
FspI TGCGCA 1 cut(s) 202
GlaI GCGC 1 cut(s) 202
GluI GCNGC 1 cut(s) 79
GsuI CTGGAG 1 cut(s) 339
HaeIII GGCC 3 cut(s) 176, 278, 515
HapII CCGG 2 cut(s) 128, 173
HhaI GCGC 1 cut(s) 203
Hin1II CATG 3 cut(s) 22, 424, 482
Hin6I GCGC 1 cut(s) 201
HinP1I GCGC 1 cut(s) 201
HincII GTYRAC 1 cut(s) 484
HindII GTYRAC 1 cut(s) 484
HinfI GANTC 3 cut(s) 6, 215, 321
HpaII CCGG 2 cut(s) 128, 173
HphI GGTGA 2 cut(s) 117, 197
Hpy166II GTNNAC 1 cut(s) 484
Hpy188III TCNNGA 1 cut(s) 10
Hpy8I GTNNAC 1 cut(s) 484
HpyCH4III ACNGT 1 cut(s) 235
HpyCH4IV ACGT 1 cut(s) 255
HpyCH4V TGCA 2 cut(s) 56, 134
HpyF3I CTNAG 2 cut(s) 273, 504
HpySE526I ACGT 1 cut(s) 255
Hsp92II CATG 3 cut(s) 22, 424, 482
HspAI GCGC 1 cut(s) 201
Kzo9I GATC 1 cut(s) 222
LpnPI CCDG 9 cut(s) 102, 141, 186, 303, 481, 525, 552, 567, 592
Lsp1109I GCAGC 1 cut(s) 90
MaeII ACGT 1 cut(s) 255
MaeIII GTNAC 3 cut(s) 23, 123, 448
MalI GATC 1 cut(s) 224
MboI GATC 1 cut(s) 222
MboII GAAGA 1 cut(s) 200
MluCI AATT 2 cut(s) 93, 395
MlyI GAGTC 1 cut(s) 330
MnlI CCTC 4 cut(s) 54, 160, 268, 536
MseI TTAA 1 cut(s) 180
MspI CCGG 2 cut(s) 128, 173
MspR9I CCNGG 1 cut(s) 540
MvaI CCWGG 1 cut(s) 540
NdeII GATC 1 cut(s) 222
NlaIII CATG 3 cut(s) 22, 424, 482
NlaIV GGNNCC 4 cut(s) 171, 426, 500, 594
NmuCI GTSAC 1 cut(s) 123
NsbI TGCGCA 1 cut(s) 202
PfeI GAWTC 2 cut(s) 6, 215
PflMI CCANNNNNTGG 1 cut(s) 495
PinAI ACCGGT 1 cut(s) 127
PkrI GCNGC 1 cut(s) 80
PleI GAGTC 1 cut(s) 329
PpsI GAGTC 1 cut(s) 329
Psp6I CCWGG 1 cut(s) 538
PspGI CCWGG 1 cut(s) 538
PspN4I GGNNCC 4 cut(s) 171, 426, 500, 594
RsaI GTAC 2 cut(s) 197, 254
RsaNI GTAC 2 cut(s) 196, 253
SaqAI TTAA 1 cut(s) 180
SatI GCNGC 1 cut(s) 79
Sau3AI GATC 1 cut(s) 222
ScaI AGTACT 1 cut(s) 197
SchI GAGTC 1 cut(s) 330
ScrFI CCNGG 1 cut(s) 540
SetI ASST 6 cut(s) 33, 37, 187, 258, 344, 472
SfcI CTRYAG 1 cut(s) 301
Sse9I AATT 2 cut(s) 93, 395
StyD4I CCNGG 1 cut(s) 538
TaaI ACNGT 1 cut(s) 235
TaiI ACGT 1 cut(s) 258
TaqI TCGA 1 cut(s) 225
TasI AATT 2 cut(s) 93, 395
TatI WGTACW 1 cut(s) 195
TfiI GAWTC 2 cut(s) 6, 215
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TscAI CASTG 1 cut(s) 496
TseFI GTSAC 1 cut(s) 123
TseI GCWGC 1 cut(s) 78
Tsp45I GTSAC 1 cut(s) 123
TspDTI ATGAA 1 cut(s) 158
TspRI CASTG 1 cut(s) 496
Van91I CCANNNNNTGG 1 cut(s) 495
XapI RAATTY 2 cut(s) 93, 395
XcmI CCANNNNNNNNNTGG 1 cut(s) 398
ZrmI AGTACT 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.