RLG00000028100

Dehydration-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000559
Physical Location & Seq
Forward (+)
18723493 .. 18725899
2407 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028100

Sequence Viewer

Length: 924 bp
ATGCTTAAGGTGGCATCAGTAGTGGTGGGAATTGGGTATGCTAATAAGGTTGATGATGGCAAGTCCTGGATGTCTTACTGGAATTCAGCTTTGCCAAAATCTCCATTGCCTTCCAAAACTGTTCAGCAACTTCTAAACCTTGCAGAAGGTAAAAGAAGTTACACTGGGATTGGAAAGGATGCTGTAAGTCTTACACCAAATGCAGATCGTTTTAATATTGGGTATGCTACCTTTAAAGAAGAAGTCAAAGTGGAGCCAGGTTTAACTACATACTTCCAAGAAAAAGATCTTCAGCATTTGGGAAAAACGGTAACATTGCGATTCTTGAAACCCACAAGTAACAAGGCAACTCTTTTGCCTCGTCAAGTTGCAAAGTCCATACCCTTTTCAAGCAGCAAGTTGCCAGAAATTCTAACATACTTTGGAGTGAAACCCAAGTCACCGGTTGCAGAAATAATGAAAACCACAATCGAAGAGTGTGAGGCACCGGCAATTAAAGGCGAAGGCAAGTACTGCGCAACATCGTTAGAATCCTTGATCGATTTCACGGTTTCAAAGCTTGGGAAGTACGTCCAAGTTTATGCAACCGAGGCCGAAAACTATAACGAAAACAAACAAGAATATAGCATTGACATTACTGGAGTCCAAAGTATTGGAGACAGGTCGATTGCGTGCCATAAGGAGAGCTATGCTTATGGTGTGTTTTACTGCCACAAATTCAAGGGCCCAACAAGGCCTTACTTGGTTCCGTTGGTGGGTGCCGATGGAGTTACAAAAGTTAAAGCTTTAGCTGTTTGCCATACTGACACCACTGGCTGGAACCCTAAGCATTTGGCCTTTCAAGTCCTCAAAATAAAGCCTGGAAATACAATCCCTGTCTGTCACTTTCTAGCCACTACCGGTCTTTTGTGGGTTCCTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BURP

Protein Analysis

308

Amino Acids

33.81

Weight (kDa)

9.14

Isoelectric Point (pI)

44.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BURP PF03181 91 - 306 3.2e-76 BURP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000559)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25610
fragaria_vesca FvH4_2g36250 FvH4_2g36250 FvH4_2g36250 FvH4_7g14680
malus_domestica MD04G1018200.v1.1 MD08G1119600.v1.1 MD08G1119700.v1.1 MD08G1119800.v1.1 MD08G1199500.v1.1 MD08G1203300.v1.1 MD15G1098800.v1.1 MD15G1219500.v1.1
prunus_persica Prupe.1G453500_v2.0.a1 Prupe.1G453600_v2.0.a1 Prupe.1G453700_v2.0.a1 Prupe.1G465600_v2.0.a1 Prupe.1G475100_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475400_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475800_v2.0.a1 Prupe.1G475900_v2.0.a1 Prupe.1G476200_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476700_v2.0.a1 Prupe.1G477000_v2.0.a1 Prupe.1G477200_v2.0.a1 Prupe.1G477400_v2.0.a1 Prupe.1G477800_v2.0.a1 Prupe.4G169000_v2.0.a1 Prupe.4G257600_v2.0.a1
pyrus_communis pycom08g16760 pycom14g01650 pycom15g09040 pycom15g09070
rosa_chinensis RchiOBHm_Chr1g0356161 RchiOBHm_Chr1g0356461 RchiOBHm_Chr5g0051031
rosa_laevigata RLG00000010869 RLG00000028095 RLG00000028100 RLG00000034755
rosa_multiflora Rmu_co8314191.1_g000001 Rmu_co8337567.1_g000001 Rmu_sc0000281.1_g000019 Rmu_sc0000446.1_g000034 Rmu_sc0000782.1_g000019 Rmu_sc0001809.1_g000027 Rmu_sc0013768.1_g000023
rosa_roxburghii Rroxscaffold_1G00029620 Rroxscaffold_4G00299510 Rroxscaffold_4G00299720 Rroxscaffold_7G00162480
rosa_rugosa Rorug01G0249900 Rorug01G0250000 Rorug05G0572100 Rorug06G0342600
rosa_samantha Rh1AG262800 Rh1AG263300 Rh1AG263600 Rh1BG231500 Rh1CG246400 Rh1CG246900 Rh1DG259200 Rh5AG337800 Rh5BG347500 Rh5CG374800 Rh5DG360600 Rh6BG447100 Rh6CG468100 Rh6DG454900
rosa_wichuraiana Rw1G023250 Rw1G023300 Rw5G031920 Rw6G039620 Rw7G036720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 517
AccB1I GGYRCC 2 cut(s) 484, 758
AccB7I CCANNNNNTGG 1 cut(s) 816
AcsI RAATTY 3 cut(s) 82, 408, 716
AcuI CTGAAG 1 cut(s) 275
AfaI GTAC 2 cut(s) 512, 569
AfiI CCNNNNNNNGG 2 cut(s) 755, 816
AflII CTTAAG 1 cut(s) 5
AgeI ACCGGT 2 cut(s) 442, 899
AgsI TTSAA 5 cut(s) 328, 390, 555, 721, 842
AjnI CCWGG 3 cut(s) 65, 256, 859
AluBI AGCT 5 cut(s) 89, 559, 687, 785, 791
AluI AGCT 5 cut(s) 89, 559, 687, 785, 791
Alw26I GTCTC 1 cut(s) 651
AoxI GGCC 4 cut(s) 591, 724, 734, 834
ApaI GGGCCC 1 cut(s) 728
ApeKI GCWGC 1 cut(s) 393
ApoI RAATTY 3 cut(s) 82, 408, 716
AsiGI ACCGGT 2 cut(s) 442, 899
AspLEI GCGC 1 cut(s) 518
AspS9I GGNCC 2 cut(s) 724, 725
AsuHPI GGTGA 1 cut(s) 432
BaeGI GKGCMC 1 cut(s) 728
BanI GGYRCC 2 cut(s) 484, 758
BanII GRGCYC 1 cut(s) 728
BbvI GCAGC 1 cut(s) 405
BccI CCATC 2 cut(s) 50, 758
BciT130I CCWGG 3 cut(s) 67, 258, 861
BcoDI GTCTC 1 cut(s) 651
BfaI CTAG 1 cut(s) 890
BfrI CTTAAG 1 cut(s) 5
BglII AGATCT 1 cut(s) 286
BisI GCNGC 1 cut(s) 394
BlsI GCNGC 1 cut(s) 395
BmcAI AGTACT 1 cut(s) 512
Bme1390I CCNGG 3 cut(s) 67, 258, 861
BmgT120I GGNCC 2 cut(s) 724, 725
BmiI GGNNCC 7 cut(s) 255, 486, 726, 747, 760, 821, 915
BmrFI CCNGG 3 cut(s) 67, 258, 861
BmrI ACTGGG 1 cut(s) 174
BmsI GCATC 2 cut(s) 23, 169
BmuI ACTGGG 1 cut(s) 174
BpmI CTGGAG 1 cut(s) 660
Bpu10I CCTNAGC 1 cut(s) 825
Bsa29I ATCGAT 1 cut(s) 540
BsaJI CCNNGG 1 cut(s) 588
BsaWI WCCGGW 2 cut(s) 442, 899
Bsc4I CCNNNNNNNGG 2 cut(s) 755, 816
Bse118I RCCGGY 3 cut(s) 442, 487, 899
Bse1I ACTGG 4 cut(s) 83, 169, 643, 817
Bse3DI GCAATG 2 cut(s) 104, 314
BseBI CCWGG 3 cut(s) 67, 258, 861
BseCI ATCGAT 1 cut(s) 540
BseDI CCNNGG 1 cut(s) 588
BseGI GGATG 2 cut(s) 75, 184
BseLI CCNNNNNNNGG 2 cut(s) 755, 816
BseMI GCAATG 2 cut(s) 104, 314
BseNI ACTGG 4 cut(s) 83, 169, 643, 817
BseSI GKGCMC 1 cut(s) 728
BseXI GCAGC 1 cut(s) 405
BshFI GGCC 4 cut(s) 593, 726, 736, 836
BshNI GGYRCC 2 cut(s) 484, 758
BshTI ACCGGT 2 cut(s) 442, 899
BshVI ATCGAT 1 cut(s) 540
BsiSI CCGG 3 cut(s) 443, 488, 900
BslI CCNNNNNNNGG 2 cut(s) 755, 816
BsmAI GTCTC 1 cut(s) 651
BsnI GGCC 4 cut(s) 593, 726, 736, 836
Bsp120I GGGCCC 1 cut(s) 724
Bsp1286I GDGCHC 1 cut(s) 728
Bsp143I GATC 3 cut(s) 205, 286, 537
BspANI GGCC 4 cut(s) 593, 726, 736, 836
BspDI ATCGAT 1 cut(s) 540
BspLI GGNNCC 7 cut(s) 255, 486, 726, 747, 760, 821, 915
BspT107I GGYRCC 2 cut(s) 484, 758
BspTI CTTAAG 1 cut(s) 5
BsrDI GCAATG 2 cut(s) 104, 314
BsrFI RCCGGY 3 cut(s) 442, 487, 899
BsrI ACTGG 4 cut(s) 83, 169, 643, 817
BssAI RCCGGY 3 cut(s) 442, 487, 899
BssECI CCNNGG 1 cut(s) 588
BssMI GATC 3 cut(s) 205, 286, 537
Bst2UI CCWGG 3 cut(s) 67, 258, 861
Bst4CI ACNGT 3 cut(s) 121, 310, 550
Bst6I CTCTTC 1 cut(s) 468
BstAFI CTTAAG 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 513
BstC8I GCNNGC 1 cut(s) 673
BstDEI CTNAG 1 cut(s) 825
BstF5I GGATG 2 cut(s) 75, 184
BstHHI GCGC 1 cut(s) 518
BstKTI GATC 3 cut(s) 208, 289, 540
BstMAI GTCTC 1 cut(s) 651
BstMBI GATC 3 cut(s) 205, 286, 537
BstMWI GCNNNNNNNGC 2 cut(s) 513, 590
BstNI CCWGG 3 cut(s) 67, 258, 861
BstSCI CCNGG 3 cut(s) 65, 256, 859
BstSLI GKGCMC 1 cut(s) 728
BstV1I GCAGC 1 cut(s) 405
BstX2I RGATCY 1 cut(s) 286
BstXI CCANNNNNNTGG 1 cut(s) 653
BstYI RGATCY 1 cut(s) 286
Bsu15I ATCGAT 1 cut(s) 540
BsuRI GGCC 4 cut(s) 593, 726, 736, 836
BsuTUI ATCGAT 1 cut(s) 540
BtsCI GGATG 2 cut(s) 75, 184
BtsIMutI CAGTG 2 cut(s) 162, 810
Cac8I GCNNGC 1 cut(s) 673
CfoI GCGC 1 cut(s) 518
Cfr10I RCCGGY 3 cut(s) 442, 487, 899
Cfr13I GGNCC 2 cut(s) 724, 725
ClaI ATCGAT 1 cut(s) 540
Csp6I GTAC 2 cut(s) 511, 568
CspAI ACCGGT 2 cut(s) 442, 899
CviQI GTAC 2 cut(s) 511, 568
DdeI CTNAG 1 cut(s) 825
DpnI GATC 3 cut(s) 207, 288, 539
DpnII GATC 3 cut(s) 205, 286, 537
DraI TTTAAA 1 cut(s) 235
Eam1104I CTCTTC 1 cut(s) 468
EarI CTCTTC 1 cut(s) 468
Eco147I AGGCCT 1 cut(s) 736
Eco24I GRGCYC 1 cut(s) 728
Eco57I CTGAAG 1 cut(s) 275
EcoO109I RGGNCCY 1 cut(s) 724
EcoRI GAATTC 1 cut(s) 82
EcoRII CCWGG 3 cut(s) 65, 256, 859
EcoT38I GRGCYC 1 cut(s) 728
Fnu4HI GCNGC 1 cut(s) 394
FokI GGATG 2 cut(s) 82, 191
FriOI GRGCYC 1 cut(s) 728
Fsp4HI GCNGC 1 cut(s) 394
FspBI CTAG 1 cut(s) 890
FspI TGCGCA 1 cut(s) 517
GlaI GCGC 1 cut(s) 517
GluI GCNGC 1 cut(s) 394
GsuI CTGGAG 1 cut(s) 660
HaeIII GGCC 4 cut(s) 593, 726, 736, 836
HapII CCGG 3 cut(s) 443, 488, 900
HhaI GCGC 1 cut(s) 518
Hin6I GCGC 1 cut(s) 516
HinP1I GCGC 1 cut(s) 516
HindIII AAGCTT 2 cut(s) 557, 783
HinfI GANTC 3 cut(s) 321, 530, 642
HpaII CCGG 3 cut(s) 443, 488, 900
HphI GGTGA 1 cut(s) 432
Hpy188III TCNNGA 1 cut(s) 325
HpyAV CCTTC 3 cut(s) 120, 140, 497
HpyCH4III ACNGT 3 cut(s) 121, 310, 550
HpyCH4IV ACGT 1 cut(s) 570
HpyCH4V TGCA 5 cut(s) 143, 203, 371, 449, 584
HpyF10VI GCNNNNNNNGC 2 cut(s) 513, 590
HpyF3I CTNAG 1 cut(s) 825
HpySE526I ACGT 1 cut(s) 570
HspAI GCGC 1 cut(s) 516
Kzo9I GATC 3 cut(s) 205, 286, 537
LmnI GCTCC 1 cut(s) 253
Lsp1109I GCAGC 1 cut(s) 405
LweI GCATC 2 cut(s) 23, 169
MaeI CTAG 1 cut(s) 890
MaeII ACGT 1 cut(s) 570
MaeIII GTNAC 6 cut(s) 158, 310, 338, 438, 769, 881
MalI GATC 3 cut(s) 207, 288, 539
MboI GATC 3 cut(s) 205, 286, 537
MboII GAAGA 3 cut(s) 251, 281, 485
MflI RGATCY 1 cut(s) 286
MhlI GDGCHC 1 cut(s) 728
MluCI AATT 5 cut(s) 30, 82, 408, 492, 716
MlyI GAGTC 1 cut(s) 651
MnlI CCTC 4 cut(s) 369, 475, 583, 857
MseI TTAA 6 cut(s) 6, 213, 234, 263, 495, 780
MspCI CTTAAG 1 cut(s) 5
MspI CCGG 3 cut(s) 443, 488, 900
MspR9I CCNGG 3 cut(s) 67, 258, 861
MvaI CCWGG 3 cut(s) 67, 258, 861
MwoI GCNNNNNNNGC 2 cut(s) 513, 590
NdeII GATC 3 cut(s) 205, 286, 537
NlaIV GGNNCC 7 cut(s) 255, 486, 726, 747, 760, 821, 915
NmuCI GTSAC 2 cut(s) 438, 881
NsbI TGCGCA 1 cut(s) 517
PceI AGGCCT 1 cut(s) 736
PfeI GAWTC 2 cut(s) 321, 530
PflMI CCANNNNNTGG 1 cut(s) 816
PfoI TCCNGGA 1 cut(s) 65
PinAI ACCGGT 2 cut(s) 442, 899
PkrI GCNGC 1 cut(s) 395
PleI GAGTC 1 cut(s) 650
PpsI GAGTC 1 cut(s) 650
Psp6I CCWGG 3 cut(s) 65, 256, 859
PspGI CCWGG 3 cut(s) 65, 256, 859
PspN4I GGNNCC 7 cut(s) 255, 486, 726, 747, 760, 821, 915
PspOMI GGGCCC 1 cut(s) 724
PspPI GGNCC 2 cut(s) 724, 725
PsuI RGATCY 1 cut(s) 286
RsaI GTAC 2 cut(s) 512, 569
RsaNI GTAC 2 cut(s) 511, 568
SaqAI TTAA 6 cut(s) 6, 213, 234, 263, 495, 780
SatI GCNGC 1 cut(s) 394
Sau3AI GATC 3 cut(s) 205, 286, 537
Sau96I GGNCC 2 cut(s) 724, 725
ScaI AGTACT 1 cut(s) 512
SchI GAGTC 1 cut(s) 651
ScrFI CCNGG 3 cut(s) 67, 258, 861
SduI GDGCHC 1 cut(s) 728
SfaNI GCATC 2 cut(s) 23, 169
SmlI CTYRAG 1 cut(s) 5
SmoI CTYRAG 1 cut(s) 5
Sse9I AATT 5 cut(s) 30, 82, 408, 492, 716
SseBI AGGCCT 1 cut(s) 736
SspI AATATT 1 cut(s) 217
SspMI CTAG 1 cut(s) 890
StuI AGGCCT 1 cut(s) 736
StyD4I CCNGG 3 cut(s) 65, 256, 859
TaaI ACNGT 3 cut(s) 121, 310, 550
TaiI ACGT 1 cut(s) 573
TaqI TCGA 3 cut(s) 471, 540, 665
TasI AATT 5 cut(s) 30, 82, 408, 492, 716
TatI WGTACW 1 cut(s) 510
TfiI GAWTC 2 cut(s) 321, 530
Tru1I TTAA 6 cut(s) 6, 213, 234, 263, 495, 780
Tru9I TTAA 6 cut(s) 6, 213, 234, 263, 495, 780
TscAI CASTG 2 cut(s) 169, 817
TseFI GTSAC 2 cut(s) 438, 881
TseI GCWGC 1 cut(s) 393
Tsp45I GTSAC 2 cut(s) 438, 881
TspDTI ATGAA 1 cut(s) 473
TspGWI ACGGA 1 cut(s) 738
TspRI CASTG 2 cut(s) 169, 817
Van91I CCANNNNNTGG 1 cut(s) 816
Vha464I CTTAAG 1 cut(s) 5
XapI RAATTY 3 cut(s) 82, 408, 716
XspI CTAG 1 cut(s) 890
ZrmI AGTACT 1 cut(s) 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.