Rh1AG263300

Dehydration-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000559
Physical Location & Seq
Reverse (-)
48826936 .. 48831116
4181 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG263300.1

Sequence Viewer

Length: 1077 bp
ATGCAGCATGTGCTGTTTCCTTTAGAATTCGATCTATATATAAGCGCACTCTGCAGTCACTTCATTCCTCACCCATTCCCTAAACAAGATCTACATACTTCCTCACCCAAATTATCTATATCCATGGATCAGTTTCGTCTTCTTTGCCTGTTTTCAATTTTCTATGTGGCATCAGTAGTGGTGGGAATTGAGTATGCTAATAAGGTCAATGATGGCAAGTCCTGGATGTCTTACTGGAATTCAGCTTTGCCAAAATCTCCGTTGCCTTCCAAAGCTGTACAGCAACTTCTAAACCCTGCAGAAGGTGAAAGGAGTTATGCGCGGATTGGAAAGGATGCTGTAAATATTAGACCACAAGCATGCTATCGTGTCGGTACAGTCTATGCTGCCTCTAAAGAAGAAATCAAAGTGGAGCCAGGTTTGACTACATACTTCCAAGGAAAAGATCTTCAGCATTTGGGAAAAACGGTGACAATGCGATTCTTGAAACCCATGAGTAACAAGGCAGCTCTTTTGCCTCGTCAAGTTGCAAAGTCCATACCCTTTTCAAGCAGCAAGTTGCCAGAAATTCTAACATACTTTGGAGTGAAACCCAAGTCACCGGTTGCAGAAATAATGAAAAGCACAATCAAAGAGTGCGAGGCACCGGCCATTGAAGGCGAAGACAAGTACTGCGCAACATCGTTAGAATCCTTGATCGATTTCACAGTTTCACATATCGGAAAGTACGTCCAAGTTTATTCAACTGAGGCCGAAAACGAAAACAAACAAGACTATAGCATTGAGATTACTGGAGTCCAAAGTATTGGAGAAAGGTCTATTGTGTGCCATAAGGAGAACTATGTTTATGGTGTGTTTTACTGCCACAAATTCTATGGCACAACAAGGGCTTACATGGTTCCATTGGTGGGTGCTGATGGAGTTACAAAAGCCAAAGCAGTAGCTATTTGCCATGTTGACACCACTGGCTGGAACCCTAAGCATTTGGCCTTTCAAATCCTCAAAATAAAGCCAGGAAATACAATCCCAGTCTGTCATTTCCTACACACTACCAGTCTTTTGTGGGTTCCTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BURP

Protein Analysis

358

Amino Acids

40.06

Weight (kDa)

8.78

Isoelectric Point (pI)

51.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BURP PF03181 144 - 357 4.1e-76 BURP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000559)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25610
fragaria_vesca FvH4_2g36250 FvH4_2g36250 FvH4_2g36250 FvH4_7g14680
malus_domestica MD04G1018200.v1.1 MD08G1119600.v1.1 MD08G1119700.v1.1 MD08G1119800.v1.1 MD08G1199500.v1.1 MD08G1203300.v1.1 MD15G1098800.v1.1 MD15G1219500.v1.1
prunus_persica Prupe.1G453500_v2.0.a1 Prupe.1G453600_v2.0.a1 Prupe.1G453700_v2.0.a1 Prupe.1G465600_v2.0.a1 Prupe.1G475100_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475400_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475800_v2.0.a1 Prupe.1G475900_v2.0.a1 Prupe.1G476200_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476700_v2.0.a1 Prupe.1G477000_v2.0.a1 Prupe.1G477200_v2.0.a1 Prupe.1G477400_v2.0.a1 Prupe.1G477800_v2.0.a1 Prupe.4G169000_v2.0.a1 Prupe.4G257600_v2.0.a1
pyrus_communis pycom08g16760 pycom14g01650 pycom15g09040 pycom15g09070
rosa_chinensis RchiOBHm_Chr1g0356161 RchiOBHm_Chr1g0356461 RchiOBHm_Chr5g0051031
rosa_laevigata RLG00000010869 RLG00000028095 RLG00000028100 RLG00000034755
rosa_multiflora Rmu_co8314191.1_g000001 Rmu_co8337567.1_g000001 Rmu_sc0000281.1_g000019 Rmu_sc0000446.1_g000034 Rmu_sc0000782.1_g000019 Rmu_sc0001809.1_g000027 Rmu_sc0013768.1_g000023
rosa_roxburghii Rroxscaffold_1G00029620 Rroxscaffold_4G00299510 Rroxscaffold_4G00299720 Rroxscaffold_7G00162480
rosa_rugosa Rorug01G0249900 Rorug01G0250000 Rorug05G0572100 Rorug06G0342600
rosa_samantha Rh1AG262800 Rh1AG263300 Rh1AG263600 Rh1BG231500 Rh1CG246400 Rh1CG246900 Rh1DG259200 Rh5AG337800 Rh5BG347500 Rh5CG374800 Rh5DG360600 Rh6BG447100 Rh6CG468100 Rh6DG454900
rosa_wichuraiana Rw1G023250 Rw1G023300 Rw5G031920 Rw6G039620 Rw7G036720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 676
AccB1I GGYRCC 1 cut(s) 643
AccB7I CCANNNNNTGG 1 cut(s) 969
AccII CGCG 1 cut(s) 322
AciI CCGC 1 cut(s) 322
AclWI GGATC 1 cut(s) 135
AcoI YGGCCR 1 cut(s) 648
AcsI RAATTY 4 cut(s) 26, 238, 567, 869
AcuI CTGAAG 1 cut(s) 434
AfaI GTAC 4 cut(s) 279, 376, 671, 728
AfiI CCNNNNNNNGG 3 cut(s) 302, 908, 969
AgeI ACCGGT 1 cut(s) 601
AgsI TTSAA 6 cut(s) 156, 487, 549, 656, 744, 995
AjnI CCWGG 3 cut(s) 221, 415, 1012
AluBI AGCT 4 cut(s) 245, 275, 509, 944
AluI AGCT 4 cut(s) 245, 275, 509, 944
AlwI GGATC 1 cut(s) 135
AoxI GGCC 3 cut(s) 648, 750, 987
ApeKI GCWGC 4 cut(s) 4, 386, 506, 552
ApoI RAATTY 4 cut(s) 26, 238, 567, 869
AsiGI ACCGGT 1 cut(s) 601
AspLEI GCGC 3 cut(s) 47, 322, 677
AsuHPI GGTGA 5 cut(s) 62, 96, 317, 481, 591
BanI GGYRCC 1 cut(s) 643
BarI GAAGNNNNNNTAC 2 cut(s) 270, 302
BbsI GAAGAC 2 cut(s) 131, 669
BbvI GCAGC 4 cut(s) 16, 373, 518, 564
BccI CCATC 2 cut(s) 206, 911
BciT130I CCWGG 3 cut(s) 223, 417, 1014
BfmI CTRYAG 3 cut(s) 52, 297, 775
BglII AGATCT 2 cut(s) 88, 445
BisI GCNGC 4 cut(s) 5, 387, 507, 553
BlsI GCNGC 4 cut(s) 6, 388, 508, 554
BmcAI AGTACT 1 cut(s) 671
Bme1390I CCNGG 3 cut(s) 223, 417, 1014
BmiI GGNNCC 5 cut(s) 414, 645, 900, 974, 1068
BmrFI CCNGG 3 cut(s) 223, 417, 1014
BmrI ACTGGG 1 cut(s) 1022
BmsI GCATC 2 cut(s) 179, 325
BmuI ACTGGG 1 cut(s) 1022
BpiI GAAGAC 2 cut(s) 131, 669
BpmI CTGGAG 1 cut(s) 813
Bpu10I CCTNAGC 1 cut(s) 978
Bsa29I ATCGAT 1 cut(s) 699
BsaJI CCNNGG 2 cut(s) 123, 436
BsaWI WCCGGW 1 cut(s) 601
Bsc4I CCNNNNNNNGG 3 cut(s) 302, 908, 969
Bse118I RCCGGY 2 cut(s) 601, 646
Bse1I ACTGG 5 cut(s) 239, 796, 970, 1028, 1053
BseBI CCWGG 3 cut(s) 223, 417, 1014
BseCI ATCGAT 1 cut(s) 699
BseDI CCNNGG 2 cut(s) 123, 436
BseGI GGATG 2 cut(s) 231, 340
BseLI CCNNNNNNNGG 3 cut(s) 302, 908, 969
BseMII CTCAG 1 cut(s) 738
BseNI ACTGG 5 cut(s) 239, 796, 970, 1028, 1053
BseXI GCAGC 4 cut(s) 16, 373, 518, 564
Bsh1236I CGCG 1 cut(s) 322
BshFI GGCC 3 cut(s) 650, 752, 989
BshNI GGYRCC 1 cut(s) 643
BshTI ACCGGT 1 cut(s) 601
BshVI ATCGAT 1 cut(s) 699
BsiSI CCGG 2 cut(s) 602, 647
BslI CCNNNNNNNGG 3 cut(s) 302, 908, 969
BsnI GGCC 3 cut(s) 650, 752, 989
Bsp1407I TGTACA 1 cut(s) 277
Bsp143I GATC 5 cut(s) 31, 88, 127, 445, 696
Bsp19I CCATGG 1 cut(s) 123
BspACI CCGC 1 cut(s) 322
BspANI GGCC 3 cut(s) 650, 752, 989
BspCNI CTCAG 1 cut(s) 739
BspDI ATCGAT 1 cut(s) 699
BspFNI CGCG 1 cut(s) 322
BspLI GGNNCC 5 cut(s) 414, 645, 900, 974, 1068
BspMAI CTGCAG 2 cut(s) 56, 301
BspPI GGATC 1 cut(s) 135
BspT107I GGYRCC 1 cut(s) 643
BsrFI RCCGGY 2 cut(s) 601, 646
BsrGI TGTACA 1 cut(s) 277
BsrI ACTGG 5 cut(s) 239, 796, 970, 1028, 1053
BssAI RCCGGY 2 cut(s) 601, 646
BssECI CCNNGG 2 cut(s) 123, 436
BssMI GATC 5 cut(s) 31, 88, 127, 445, 696
BssT1I CCWWGG 2 cut(s) 123, 436
Bst2UI CCWGG 3 cut(s) 223, 417, 1014
Bst4CI ACNGT 3 cut(s) 379, 469, 709
BstAPI GCANNNNNTGC 1 cut(s) 10
BstAUI TGTACA 1 cut(s) 277
BstC8I GCNNGC 1 cut(s) 361
BstDEI CTNAG 2 cut(s) 747, 978
BstDSI CCRYGG 1 cut(s) 123
BstENI CCTNNNNNAGG 1 cut(s) 300
BstF5I GGATG 2 cut(s) 231, 340
BstFNI CGCG 1 cut(s) 322
BstHHI GCGC 3 cut(s) 47, 322, 677
BstKTI GATC 5 cut(s) 34, 91, 130, 448, 699
BstMBI GATC 5 cut(s) 31, 88, 127, 445, 696
BstMWI GCNNNNNNNGC 2 cut(s) 10, 51
BstNI CCWGG 3 cut(s) 223, 417, 1014
BstNSI RCATGY 2 cut(s) 11, 363
BstSCI CCNGG 3 cut(s) 221, 415, 1012
BstSFI CTRYAG 3 cut(s) 52, 297, 775
BstUI CGCG 1 cut(s) 322
BstV1I GCAGC 4 cut(s) 16, 373, 518, 564
BstV2I GAAGAC 2 cut(s) 131, 669
BstX2I RGATCY 2 cut(s) 88, 445
BstXI CCANNNNNNTGG 1 cut(s) 806
BstYI RGATCY 2 cut(s) 88, 445
Bsu15I ATCGAT 1 cut(s) 699
BsuRI GGCC 3 cut(s) 650, 752, 989
BsuTUI ATCGAT 1 cut(s) 699
BtgI CCRYGG 1 cut(s) 123
BtsCI GGATG 2 cut(s) 231, 340
BtsIMutI CAGTG 1 cut(s) 963
Cac8I GCNNGC 1 cut(s) 361
CfoI GCGC 3 cut(s) 47, 322, 677
Cfr10I RCCGGY 2 cut(s) 601, 646
ClaI ATCGAT 1 cut(s) 699
Csp6I GTAC 4 cut(s) 278, 375, 670, 727
CspAI ACCGGT 1 cut(s) 601
CviAII CATG 6 cut(s) 8, 124, 360, 493, 895, 953
CviQI GTAC 4 cut(s) 278, 375, 670, 727
DdeI CTNAG 2 cut(s) 747, 978
DpnI GATC 5 cut(s) 33, 90, 129, 447, 698
DpnII GATC 5 cut(s) 31, 88, 127, 445, 696
EaeI YGGCCR 1 cut(s) 648
Eco130I CCWWGG 2 cut(s) 123, 436
Eco57I CTGAAG 1 cut(s) 434
EcoNI CCTNNNNNAGG 1 cut(s) 300
EcoRI GAATTC 2 cut(s) 26, 238
EcoRII CCWGG 3 cut(s) 221, 415, 1012
EcoT14I CCWWGG 2 cut(s) 123, 436
ErhI CCWWGG 2 cut(s) 123, 436
FaeI CATG 6 cut(s) 11, 127, 363, 496, 898, 956
FatI CATG 6 cut(s) 7, 123, 359, 492, 894, 952
Fnu4HI GCNGC 4 cut(s) 5, 387, 507, 553
FokI GGATG 2 cut(s) 238, 347
Fsp4HI GCNGC 4 cut(s) 5, 387, 507, 553
FspI TGCGCA 1 cut(s) 676
GlaI GCGC 3 cut(s) 46, 321, 676
GluI GCNGC 4 cut(s) 5, 387, 507, 553
GsuI CTGGAG 1 cut(s) 813
HaeIII GGCC 3 cut(s) 650, 752, 989
HapII CCGG 2 cut(s) 602, 647
HhaI GCGC 3 cut(s) 47, 322, 677
Hin1II CATG 6 cut(s) 11, 127, 363, 496, 898, 956
Hin6I GCGC 3 cut(s) 45, 320, 675
HinP1I GCGC 3 cut(s) 45, 320, 675
HincII GTYRAC 1 cut(s) 958
HindII GTYRAC 1 cut(s) 958
HinfI GANTC 3 cut(s) 480, 689, 795
HpaII CCGG 2 cut(s) 602, 647
HphI GGTGA 5 cut(s) 62, 96, 317, 481, 591
Hpy166II GTNNAC 1 cut(s) 958
Hpy188I TCNGA 1 cut(s) 722
Hpy188III TCNNGA 1 cut(s) 484
Hpy8I GTNNAC 1 cut(s) 958
HpyAV CCTTC 3 cut(s) 276, 296, 650
HpyCH4III ACNGT 3 cut(s) 379, 469, 709
HpyCH4IV ACGT 1 cut(s) 729
HpyCH4V TGCA 5 cut(s) 4, 54, 299, 530, 608
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 51
HpyF3I CTNAG 2 cut(s) 747, 978
HpySE526I ACGT 1 cut(s) 729
Hsp92II CATG 6 cut(s) 11, 127, 363, 496, 898, 956
HspAI GCGC 3 cut(s) 45, 320, 675
Kzo9I GATC 5 cut(s) 31, 88, 127, 445, 696
LmnI GCTCC 1 cut(s) 412
Lsp1109I GCAGC 4 cut(s) 16, 373, 518, 564
LweI GCATC 2 cut(s) 179, 325
MaeII ACGT 1 cut(s) 729
MaeIII GTNAC 5 cut(s) 56, 469, 497, 597, 922
MalI GATC 5 cut(s) 33, 90, 129, 447, 698
MboI GATC 5 cut(s) 31, 88, 127, 445, 696
MboII GAAGA 4 cut(s) 131, 410, 440, 674
MflI RGATCY 2 cut(s) 88, 445
MluCI AATT 7 cut(s) 26, 110, 156, 186, 238, 567, 869
MlyI GAGTC 1 cut(s) 804
MnlI CCTC 7 cut(s) 78, 112, 400, 528, 634, 742, 1010
MslI CAYNNNNRTG 1 cut(s) 358
MspI CCGG 2 cut(s) 602, 647
MspR9I CCNGG 3 cut(s) 223, 417, 1014
MvaI CCWGG 3 cut(s) 223, 417, 1014
MvnI CGCG 1 cut(s) 322
MwoI GCNNNNNNNGC 2 cut(s) 10, 51
NcoI CCATGG 1 cut(s) 123
NdeII GATC 5 cut(s) 31, 88, 127, 445, 696
NlaIII CATG 6 cut(s) 11, 127, 363, 496, 898, 956
NlaIV GGNNCC 5 cut(s) 414, 645, 900, 974, 1068
NmuCI GTSAC 3 cut(s) 56, 469, 597
NsbI TGCGCA 1 cut(s) 676
NspI RCATGY 2 cut(s) 11, 363
PaeI GCATGC 1 cut(s) 363
PcsI WCGNNNNNNNCGW 1 cut(s) 726
PfeI GAWTC 2 cut(s) 480, 689
PflMI CCANNNNNTGG 1 cut(s) 969
PfoI TCCNGGA 1 cut(s) 221
PinAI ACCGGT 1 cut(s) 601
PkrI GCNGC 4 cut(s) 6, 388, 508, 554
PleI GAGTC 1 cut(s) 803
PpsI GAGTC 1 cut(s) 803
Psp6I CCWGG 3 cut(s) 221, 415, 1012
PspGI CCWGG 3 cut(s) 221, 415, 1012
PspN4I GGNNCC 5 cut(s) 414, 645, 900, 974, 1068
PstI CTGCAG 2 cut(s) 56, 301
PsuI RGATCY 2 cut(s) 88, 445
RsaI GTAC 4 cut(s) 279, 376, 671, 728
RsaNI GTAC 4 cut(s) 278, 375, 670, 727
RseI CAYNNNNRTG 1 cut(s) 358
SatI GCNGC 4 cut(s) 5, 387, 507, 553
Sau3AI GATC 5 cut(s) 31, 88, 127, 445, 696
ScaI AGTACT 1 cut(s) 671
SchI GAGTC 1 cut(s) 804
ScrFI CCNGG 3 cut(s) 223, 417, 1014
SetI ASST 9 cut(s) 207, 247, 277, 307, 421, 511, 732, 818, 946
SfaNI GCATC 2 cut(s) 179, 325
SfcI CTRYAG 3 cut(s) 52, 297, 775
SmiMI CAYNNNNRTG 1 cut(s) 358
SphI GCATGC 1 cut(s) 363
Sse9I AATT 7 cut(s) 26, 110, 156, 186, 238, 567, 869
SsiI CCGC 1 cut(s) 322
SspI AATATT 1 cut(s) 346
StyD4I CCNGG 3 cut(s) 221, 415, 1012
StyI CCWWGG 2 cut(s) 123, 436
TaaI ACNGT 3 cut(s) 379, 469, 709
TaiI ACGT 1 cut(s) 732
TaqI TCGA 2 cut(s) 30, 699
TasI AATT 7 cut(s) 26, 110, 156, 186, 238, 567, 869
TatI WGTACW 2 cut(s) 277, 669
TfiI GAWTC 2 cut(s) 480, 689
TscAI CASTG 1 cut(s) 970
TseFI GTSAC 3 cut(s) 56, 469, 597
TseI GCWGC 4 cut(s) 4, 386, 506, 552
Tsp45I GTSAC 3 cut(s) 56, 469, 597
TspDTI ATGAA 2 cut(s) 52, 632
TspGWI ACGGA 1 cut(s) 249
TspRI CASTG 1 cut(s) 970
Van91I CCANNNNNTGG 1 cut(s) 969
XagI CCTNNNNNAGG 1 cut(s) 300
XapI RAATTY 4 cut(s) 26, 238, 567, 869
XceI RCATGY 2 cut(s) 11, 363
XcmI CCANNNNNNNNNTGG 1 cut(s) 872
ZrmI AGTACT 1 cut(s) 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.