Rh1DG259200

Dehydration-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000559
Physical Location & Seq
Reverse (-)
47533177 .. 47536673
3497 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG259200.1

Sequence Viewer

Length: 954 bp
ATGGCTCAGTTTCGTCTTCTTTGCCTGTTTTCAATTTTCTATGTGGCATCAGTAGTGGTGGGAATTGGGTATGCTAATAAGGTTGATGATGGCAAGTCCTGGATGTCTTACTGGAATTCAGCTTTGCCAAAATCTCCATTGCCTTCCAAATCTGTACAGCAACTTCTAAACCTTGCAGAAGGTGAAAGAAGTTACACTGGGACTGGAAAGGATGCTGTAAGTCTTACATCAAATACAGATTTTAATATTGGGTATGCTGCCTTTAAAGAAGAAGTCAAAGTGGAGCCAGGTTTAACTACATACTTCCAAGAAAAAGATCTTCAGCATTTGGGAAAAACGGTAACATTGCGATTCTCGAAACCCACAAGTAACAAGGCAACTCTTTTGCCTCGTCAAGTTGCAAAGTCCATACCCTTTTCAAGCAGCAAGTTGCCAGAAATTCTAACATACTTTGGAGTGAAACACAAGTCACCGGTTGCAGAAATAATGAAAAGCACAATCGAAGAGTGTGAGGCACCGGCAATTAAAGGCGAAGGCAAGTACTGCGCAACATCGTTAGAATCCTTGATCGATTTCACGGTTTCAAAGCTCGGGAAGTACGTCGAAGTTTATGCAACCGAGGCCGAAAACTATAACGAAAACAAACAAGAATATAACATTGACATTACTGGAGTCCAAAGTATTGGAGACAGGTCGATTGCGTGCCATAAGGAGAGCTATGCTTATGGTGTGTTTTACTGCCACAAATTCAAGGGCCCAACAAGGCCTTACATGGTTCCGTTGGTGGGTGCCGATGGAGTTACAAAAGTTAAAGCTTTAGCTGTTTGCCATACTGACACCACTGGCTGGAACCCTAAGCATTTGGCCTTTCAAGTCCTCAAAATAAAGCCTGGAAATACAATCCCTGTCTGTCACTTTCTAGCCACTACCGGTCTTTTGTGGGTTCCTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BURP

Protein Analysis

317

Amino Acids

35.03

Weight (kDa)

8.76

Isoelectric Point (pI)

48.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BURP PF03181 101 - 316 5.7e-77 BURP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000559)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25610
fragaria_vesca FvH4_2g36250 FvH4_2g36250 FvH4_2g36250 FvH4_7g14680
malus_domestica MD04G1018200.v1.1 MD08G1119600.v1.1 MD08G1119700.v1.1 MD08G1119800.v1.1 MD08G1199500.v1.1 MD08G1203300.v1.1 MD15G1098800.v1.1 MD15G1219500.v1.1
prunus_persica Prupe.1G453500_v2.0.a1 Prupe.1G453600_v2.0.a1 Prupe.1G453700_v2.0.a1 Prupe.1G465600_v2.0.a1 Prupe.1G475100_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475400_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475800_v2.0.a1 Prupe.1G475900_v2.0.a1 Prupe.1G476200_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476700_v2.0.a1 Prupe.1G477000_v2.0.a1 Prupe.1G477200_v2.0.a1 Prupe.1G477400_v2.0.a1 Prupe.1G477800_v2.0.a1 Prupe.4G169000_v2.0.a1 Prupe.4G257600_v2.0.a1
pyrus_communis pycom08g16760 pycom14g01650 pycom15g09040 pycom15g09070
rosa_chinensis RchiOBHm_Chr1g0356161 RchiOBHm_Chr1g0356461 RchiOBHm_Chr5g0051031
rosa_laevigata RLG00000010869 RLG00000028095 RLG00000028100 RLG00000034755
rosa_multiflora Rmu_co8314191.1_g000001 Rmu_co8337567.1_g000001 Rmu_sc0000281.1_g000019 Rmu_sc0000446.1_g000034 Rmu_sc0000782.1_g000019 Rmu_sc0001809.1_g000027 Rmu_sc0013768.1_g000023
rosa_roxburghii Rroxscaffold_1G00029620 Rroxscaffold_4G00299510 Rroxscaffold_4G00299720 Rroxscaffold_7G00162480
rosa_rugosa Rorug01G0249900 Rorug01G0250000 Rorug05G0572100 Rorug06G0342600
rosa_samantha Rh1AG262800 Rh1AG263300 Rh1AG263600 Rh1BG231500 Rh1CG246400 Rh1CG246900 Rh1DG259200 Rh5AG337800 Rh5BG347500 Rh5CG374800 Rh5DG360600 Rh6BG447100 Rh6CG468100 Rh6DG454900
rosa_wichuraiana Rw1G023250 Rw1G023300 Rw5G031920 Rw6G039620 Rw7G036720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 547
AccB1I GGYRCC 2 cut(s) 514, 788
AccB7I CCANNNNNTGG 1 cut(s) 846
AcsI RAATTY 3 cut(s) 115, 438, 746
AcuI CTGAAG 1 cut(s) 305
AfaI GTAC 3 cut(s) 156, 542, 599
AfiI CCNNNNNNNGG 2 cut(s) 785, 846
AgeI ACCGGT 2 cut(s) 472, 929
AgsI TTSAA 5 cut(s) 33, 420, 585, 751, 872
AjnI CCWGG 3 cut(s) 98, 286, 889
AluBI AGCT 5 cut(s) 122, 589, 717, 815, 821
AluI AGCT 5 cut(s) 122, 589, 717, 815, 821
Alw26I GTCTC 1 cut(s) 681
Ama87I CYCGRG 1 cut(s) 590
AoxI GGCC 4 cut(s) 621, 754, 764, 864
ApaI GGGCCC 1 cut(s) 758
ApeKI GCWGC 2 cut(s) 257, 423
ApoI RAATTY 3 cut(s) 115, 438, 746
AsiGI ACCGGT 2 cut(s) 472, 929
AspLEI GCGC 1 cut(s) 548
AspS9I GGNCC 2 cut(s) 754, 755
AsuHPI GGTGA 2 cut(s) 194, 462
AvaI CYCGRG 1 cut(s) 590
BaeGI GKGCMC 1 cut(s) 758
BanI GGYRCC 2 cut(s) 514, 788
BanII GRGCYC 1 cut(s) 758
BarI GAAGNNNNNNTAC 2 cut(s) 147, 179
BbsI GAAGAC 1 cut(s) 8
BbvI GCAGC 2 cut(s) 244, 435
BccI CCATC 2 cut(s) 83, 788
BcgI CGANNNNNNTGC 2 cut(s) 593, 627
BciT130I CCWGG 3 cut(s) 100, 288, 891
BcoDI GTCTC 1 cut(s) 681
BfaI CTAG 1 cut(s) 920
BglII AGATCT 1 cut(s) 316
BisI GCNGC 2 cut(s) 258, 424
BlsI GCNGC 2 cut(s) 259, 425
BmcAI AGTACT 1 cut(s) 542
Bme1390I CCNGG 3 cut(s) 100, 288, 891
BmeT110I CYCGRG 1 cut(s) 590
BmgT120I GGNCC 2 cut(s) 754, 755
BmiI GGNNCC 7 cut(s) 285, 516, 756, 777, 790, 851, 945
BmrFI CCNGG 3 cut(s) 100, 288, 891
BmrI ACTGGG 1 cut(s) 207
BmsI GCATC 2 cut(s) 56, 202
BmuI ACTGGG 1 cut(s) 207
BpiI GAAGAC 1 cut(s) 8
BpmI CTGGAG 1 cut(s) 690
Bpu10I CCTNAGC 1 cut(s) 855
Bsa29I ATCGAT 1 cut(s) 570
BsaJI CCNNGG 1 cut(s) 618
BsaWI WCCGGW 2 cut(s) 472, 929
Bsc4I CCNNNNNNNGG 2 cut(s) 785, 846
Bse118I RCCGGY 3 cut(s) 472, 517, 929
Bse1I ACTGG 5 cut(s) 116, 202, 208, 673, 847
Bse3DI GCAATG 2 cut(s) 137, 344
BseBI CCWGG 3 cut(s) 100, 288, 891
BseCI ATCGAT 1 cut(s) 570
BseDI CCNNGG 1 cut(s) 618
BseGI GGATG 2 cut(s) 108, 217
BseLI CCNNNNNNNGG 2 cut(s) 785, 846
BseMI GCAATG 2 cut(s) 137, 344
BseMII CTCAG 1 cut(s) 20
BseNI ACTGG 5 cut(s) 116, 202, 208, 673, 847
BseSI GKGCMC 1 cut(s) 758
BseXI GCAGC 2 cut(s) 244, 435
BshFI GGCC 4 cut(s) 623, 756, 766, 866
BshNI GGYRCC 2 cut(s) 514, 788
BshTI ACCGGT 2 cut(s) 472, 929
BshVI ATCGAT 1 cut(s) 570
BsiHKCI CYCGRG 1 cut(s) 590
BsiSI CCGG 3 cut(s) 473, 518, 930
BslFI GGGAC 1 cut(s) 214
BslI CCNNNNNNNGG 2 cut(s) 785, 846
BsmAI GTCTC 1 cut(s) 681
BsmFI GGGAC 1 cut(s) 214
BsnI GGCC 4 cut(s) 623, 756, 766, 866
BsoBI CYCGRG 1 cut(s) 590
Bsp120I GGGCCC 1 cut(s) 754
Bsp1286I GDGCHC 1 cut(s) 758
Bsp1407I TGTACA 1 cut(s) 154
Bsp143I GATC 2 cut(s) 316, 567
BspANI GGCC 4 cut(s) 623, 756, 766, 866
BspCNI CTCAG 1 cut(s) 19
BspDI ATCGAT 1 cut(s) 570
BspLI GGNNCC 7 cut(s) 285, 516, 756, 777, 790, 851, 945
BspT107I GGYRCC 2 cut(s) 514, 788
BsrDI GCAATG 2 cut(s) 137, 344
BsrFI RCCGGY 3 cut(s) 472, 517, 929
BsrGI TGTACA 1 cut(s) 154
BsrI ACTGG 5 cut(s) 116, 202, 208, 673, 847
BssAI RCCGGY 3 cut(s) 472, 517, 929
BssECI CCNNGG 1 cut(s) 618
BssMI GATC 2 cut(s) 316, 567
Bst2UI CCWGG 3 cut(s) 100, 288, 891
Bst4CI ACNGT 2 cut(s) 340, 580
Bst6I CTCTTC 1 cut(s) 498
BstAPI GCANNNNNTGC 1 cut(s) 543
BstAUI TGTACA 1 cut(s) 154
BstC8I GCNNGC 1 cut(s) 703
BstDEI CTNAG 2 cut(s) 6, 855
BstF5I GGATG 2 cut(s) 108, 217
BstHHI GCGC 1 cut(s) 548
BstKTI GATC 2 cut(s) 319, 570
BstMAI GTCTC 1 cut(s) 681
BstMBI GATC 2 cut(s) 316, 567
BstMWI GCNNNNNNNGC 2 cut(s) 543, 620
BstNI CCWGG 3 cut(s) 100, 288, 891
BstSCI CCNGG 3 cut(s) 98, 286, 889
BstSLI GKGCMC 1 cut(s) 758
BstV1I GCAGC 2 cut(s) 244, 435
BstV2I GAAGAC 1 cut(s) 8
BstX2I RGATCY 1 cut(s) 316
BstXI CCANNNNNNTGG 1 cut(s) 683
BstYI RGATCY 1 cut(s) 316
Bsu15I ATCGAT 1 cut(s) 570
BsuRI GGCC 4 cut(s) 623, 756, 766, 866
BsuTUI ATCGAT 1 cut(s) 570
BtsCI GGATG 2 cut(s) 108, 217
BtsIMutI CAGTG 2 cut(s) 195, 840
Cac8I GCNNGC 1 cut(s) 703
CfoI GCGC 1 cut(s) 548
Cfr10I RCCGGY 3 cut(s) 472, 517, 929
Cfr13I GGNCC 2 cut(s) 754, 755
ClaI ATCGAT 1 cut(s) 570
Csp6I GTAC 3 cut(s) 155, 541, 598
CspAI ACCGGT 2 cut(s) 472, 929
CviAII CATG 1 cut(s) 772
CviQI GTAC 3 cut(s) 155, 541, 598
DdeI CTNAG 2 cut(s) 6, 855
DpnI GATC 2 cut(s) 318, 569
DpnII GATC 2 cut(s) 316, 567
DraI TTTAAA 1 cut(s) 265
Eam1104I CTCTTC 1 cut(s) 498
EarI CTCTTC 1 cut(s) 498
Eco147I AGGCCT 1 cut(s) 766
Eco24I GRGCYC 1 cut(s) 758
Eco57I CTGAAG 1 cut(s) 305
Eco88I CYCGRG 1 cut(s) 590
EcoO109I RGGNCCY 1 cut(s) 754
EcoRI GAATTC 1 cut(s) 115
EcoRII CCWGG 3 cut(s) 98, 286, 889
EcoT38I GRGCYC 1 cut(s) 758
FaeI CATG 1 cut(s) 775
FaqI GGGAC 1 cut(s) 214
FatI CATG 1 cut(s) 771
Fnu4HI GCNGC 2 cut(s) 258, 424
FokI GGATG 2 cut(s) 115, 224
FriOI GRGCYC 1 cut(s) 758
Fsp4HI GCNGC 2 cut(s) 258, 424
FspBI CTAG 1 cut(s) 920
FspI TGCGCA 1 cut(s) 547
GlaI GCGC 1 cut(s) 547
GluI GCNGC 2 cut(s) 258, 424
GsuI CTGGAG 1 cut(s) 690
HaeIII GGCC 4 cut(s) 623, 756, 766, 866
HapII CCGG 3 cut(s) 473, 518, 930
HhaI GCGC 1 cut(s) 548
Hin1II CATG 1 cut(s) 775
Hin6I GCGC 1 cut(s) 546
HinP1I GCGC 1 cut(s) 546
HindIII AAGCTT 1 cut(s) 813
HinfI GANTC 3 cut(s) 351, 560, 672
HpaII CCGG 3 cut(s) 473, 518, 930
HphI GGTGA 2 cut(s) 194, 462
Hpy188III TCNNGA 2 cut(s) 355, 592
Hpy99I CGWCG 1 cut(s) 605
HpyAV CCTTC 3 cut(s) 153, 173, 527
HpyCH4III ACNGT 2 cut(s) 340, 580
HpyCH4IV ACGT 1 cut(s) 600
HpyCH4V TGCA 4 cut(s) 176, 401, 479, 614
HpyF10VI GCNNNNNNNGC 2 cut(s) 543, 620
HpyF3I CTNAG 2 cut(s) 6, 855
HpySE526I ACGT 1 cut(s) 600
Hsp92II CATG 1 cut(s) 775
HspAI GCGC 1 cut(s) 546
Kzo9I GATC 2 cut(s) 316, 567
LmnI GCTCC 1 cut(s) 283
Lsp1109I GCAGC 2 cut(s) 244, 435
LweI GCATC 2 cut(s) 56, 202
MaeI CTAG 1 cut(s) 920
MaeII ACGT 1 cut(s) 600
MaeIII GTNAC 6 cut(s) 191, 340, 368, 468, 799, 911
MalI GATC 2 cut(s) 318, 569
MboI GATC 2 cut(s) 316, 567
MboII GAAGA 4 cut(s) 8, 281, 311, 515
MflI RGATCY 1 cut(s) 316
MhlI GDGCHC 1 cut(s) 758
MluCI AATT 6 cut(s) 33, 63, 115, 438, 522, 746
MlyI GAGTC 1 cut(s) 681
MnlI CCTC 4 cut(s) 399, 505, 613, 887
MseI TTAA 5 cut(s) 243, 264, 293, 525, 810
MspI CCGG 3 cut(s) 473, 518, 930
MspR9I CCNGG 3 cut(s) 100, 288, 891
MvaI CCWGG 3 cut(s) 100, 288, 891
MwoI GCNNNNNNNGC 2 cut(s) 543, 620
NdeII GATC 2 cut(s) 316, 567
NlaIII CATG 1 cut(s) 775
NlaIV GGNNCC 7 cut(s) 285, 516, 756, 777, 790, 851, 945
NmuCI GTSAC 2 cut(s) 468, 911
NsbI TGCGCA 1 cut(s) 547
PceI AGGCCT 1 cut(s) 766
PcsI WCGNNNNNNNCGW 1 cut(s) 597
PfeI GAWTC 2 cut(s) 351, 560
PflMI CCANNNNNTGG 1 cut(s) 846
PfoI TCCNGGA 1 cut(s) 98
PinAI ACCGGT 2 cut(s) 472, 929
PkrI GCNGC 2 cut(s) 259, 425
PleI GAGTC 1 cut(s) 680
PpsI GAGTC 1 cut(s) 680
Psp6I CCWGG 3 cut(s) 98, 286, 889
PspGI CCWGG 3 cut(s) 98, 286, 889
PspN4I GGNNCC 7 cut(s) 285, 516, 756, 777, 790, 851, 945
PspOMI GGGCCC 1 cut(s) 754
PspPI GGNCC 2 cut(s) 754, 755
PsuI RGATCY 1 cut(s) 316
RsaI GTAC 3 cut(s) 156, 542, 599
RsaNI GTAC 3 cut(s) 155, 541, 598
SaqAI TTAA 5 cut(s) 243, 264, 293, 525, 810
SatI GCNGC 2 cut(s) 258, 424
Sau3AI GATC 2 cut(s) 316, 567
Sau96I GGNCC 2 cut(s) 754, 755
ScaI AGTACT 1 cut(s) 542
SchI GAGTC 1 cut(s) 681
ScrFI CCNGG 3 cut(s) 100, 288, 891
SduI GDGCHC 1 cut(s) 758
SfaNI GCATC 2 cut(s) 56, 202
Sse9I AATT 6 cut(s) 33, 63, 115, 438, 522, 746
SseBI AGGCCT 1 cut(s) 766
SspI AATATT 1 cut(s) 247
SspMI CTAG 1 cut(s) 920
StuI AGGCCT 1 cut(s) 766
StyD4I CCNGG 3 cut(s) 98, 286, 889
TaaI ACNGT 2 cut(s) 340, 580
TaiI ACGT 1 cut(s) 603
TaqI TCGA 5 cut(s) 356, 501, 570, 603, 695
TasI AATT 6 cut(s) 33, 63, 115, 438, 522, 746
TatI WGTACW 2 cut(s) 154, 540
TfiI GAWTC 2 cut(s) 351, 560
Tru1I TTAA 5 cut(s) 243, 264, 293, 525, 810
Tru9I TTAA 5 cut(s) 243, 264, 293, 525, 810
TscAI CASTG 2 cut(s) 202, 847
TseFI GTSAC 2 cut(s) 468, 911
TseI GCWGC 2 cut(s) 257, 423
Tsp45I GTSAC 2 cut(s) 468, 911
TspDTI ATGAA 1 cut(s) 503
TspGWI ACGGA 1 cut(s) 768
TspRI CASTG 2 cut(s) 202, 847
Van91I CCANNNNNTGG 1 cut(s) 846
XapI RAATTY 3 cut(s) 115, 438, 746
XspI CTAG 1 cut(s) 920
ZrmI AGTACT 1 cut(s) 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.