Prupe.1G475400_v2.0.a1

BURP domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000559
Physical Location & Seq
Forward (+)
39560264 .. 39563960
3697 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G475400.1

Sequence Viewer

Length: 1083 bp
ATGCTGCTCAACCAGCACCTCAACTTTACTGGAACTCCGTCCTGCCAAACACACAGATGCCAAGATCTATCAGTGAACTTCTGCATCCTGACTCCACAAATGAAGAAAAGAGCACAAATGACGTTGGCAAACCTGAAACTTTCCCATTGGGCAATAAACATTACTCCAGTCAAAAACATTATGGAAGAGGCAAACCTGAAACTTTCCCATTGGGCAATAAACATTACTCCAGTCAAAGACATTATGGAAGAGGCAAACCTGAAACTTTCCCATTGGGCAATAAACATTACTCCAGTCAAAGACATTATGGAAGAGGCAAACCTGAAACTTTCCCATTGGGCAATAAACATTACTCCAGTCAAAAACATTATGGAAGAGGCAAACCTGAAACTTTCCCATTGGGCAATCAGCATTACTCCAGTCAAAAAAAGTATGGAAGAGGTGCTTCTCCATCCGACAATCAACCACCAATTCCATAGAAATTCAAACACGGCTACTTTCTTGCCACGAGAAAGCGCTCAATCGATCCCCTTCTCCTCTAACAAACTACCAGAAATTTTCAACCATTTTTCAGTGAAGCCAACATCTGAGGAAGCCAAAACAATTAAGCAAACAATCGAAGAGTGTGAAGCTCCAGACCTTAAGGGAGAGGAAATATATTGCGCCACATCTTTAGAATCAATGGTTGATTTTAGCACTTCGAAGCTTGGAACAAGAAACGTTGAAGCAATCTCGACGGAGGTATTGGAAAAAGGAGCCACCATGTCCATCCAAAACTATACAACAATGCCGGGACTGAAGAAGTTGGCAGGTGACAAAGTCGTTGTGTGTCATAAGCAGAACTATCCCTATGCTGTGTTTTTCTGCCATGCAATAAAACATACAGCAGCTTATGCTCTCTCCCTGAAAGGCGATGATGGGGAGAAGGTTAAAGCAGTAACCATCTGCCATCTAGACACATCAGAATGGGACCCAGAGCATATGTCCTTCAAAATCGTCAACGTTAAGCCCGGAACCATTCCCATCTGCCATTTCATTTCCACTGATGCTATTGCCTGGGTTCCGAACCACAAATCTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BURP

Protein Analysis

361

Amino Acids

40.46

Weight (kDa)

7.01

Isoelectric Point (pI)

38.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000559)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25610
fragaria_vesca FvH4_2g36250 FvH4_2g36250 FvH4_2g36250 FvH4_7g14680
malus_domestica MD04G1018200.v1.1 MD08G1119600.v1.1 MD08G1119700.v1.1 MD08G1119800.v1.1 MD08G1199500.v1.1 MD08G1203300.v1.1 MD15G1098800.v1.1 MD15G1219500.v1.1
prunus_persica Prupe.1G453500_v2.0.a1 Prupe.1G453600_v2.0.a1 Prupe.1G453700_v2.0.a1 Prupe.1G465600_v2.0.a1 Prupe.1G475100_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475400_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475800_v2.0.a1 Prupe.1G475900_v2.0.a1 Prupe.1G476200_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476700_v2.0.a1 Prupe.1G477000_v2.0.a1 Prupe.1G477200_v2.0.a1 Prupe.1G477400_v2.0.a1 Prupe.1G477800_v2.0.a1 Prupe.4G169000_v2.0.a1 Prupe.4G257600_v2.0.a1
pyrus_communis pycom08g16760 pycom14g01650 pycom15g09040 pycom15g09070
rosa_chinensis RchiOBHm_Chr1g0356161 RchiOBHm_Chr1g0356461 RchiOBHm_Chr5g0051031
rosa_laevigata RLG00000010869 RLG00000028095 RLG00000028100 RLG00000034755
rosa_multiflora Rmu_co8314191.1_g000001 Rmu_co8337567.1_g000001 Rmu_sc0000281.1_g000019 Rmu_sc0000446.1_g000034 Rmu_sc0000782.1_g000019 Rmu_sc0001809.1_g000027 Rmu_sc0013768.1_g000023
rosa_roxburghii Rroxscaffold_1G00029620 Rroxscaffold_4G00299510 Rroxscaffold_4G00299720 Rroxscaffold_7G00162480
rosa_rugosa Rorug01G0249900 Rorug01G0250000 Rorug05G0572100 Rorug06G0342600
rosa_samantha Rh1AG262800 Rh1AG263300 Rh1AG263600 Rh1BG231500 Rh1CG246400 Rh1CG246900 Rh1DG259200 Rh5AG337800 Rh5BG347500 Rh5CG374800 Rh5DG360600 Rh6BG447100 Rh6CG468100 Rh6DG454900
rosa_wichuraiana Rw1G023250 Rw1G023300 Rw5G031920 Rw6G039620 Rw7G036720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 800
Acc36I ACCTGC 1 cut(s) 800
AclI AACGTT 2 cut(s) 720, 1002
AclWI GGATC 1 cut(s) 520
AcsI RAATTY 2 cut(s) 481, 555
AcuI CTGAAG 1 cut(s) 818
AfeI AGCGCT 1 cut(s) 517
AflII CTTAAG 1 cut(s) 641
AgsI TTSAA 4 cut(s) 486, 562, 725, 991
AjnI CCWGG 1 cut(s) 1055
AluBI AGCT 3 cut(s) 632, 706, 890
AluI AGCT 3 cut(s) 632, 706, 890
Alw21I GWGCWC 1 cut(s) 115
AlwI GGATC 1 cut(s) 520
Aor51HI AGCGCT 1 cut(s) 517
ApeKI GCWGC 2 cut(s) 4, 887
ApoI RAATTY 2 cut(s) 481, 555
AspLEI GCGC 2 cut(s) 518, 665
AspS9I GGNCC 1 cut(s) 970
AsuC2I CCSGG 2 cut(s) 792, 1011
AsuHPI GGTGA 1 cut(s) 824
AsuII TTCGAA 1 cut(s) 701
AvaII GGWCC 1 cut(s) 970
BauI CACGAG 1 cut(s) 507
Bbv12I GWGCWC 1 cut(s) 115
BbvI GCAGC 1 cut(s) 899
BccI CCATC 6 cut(s) 459, 776, 911, 950, 957, 1031
BceAI ACGGC 1 cut(s) 507
BciT130I CCWGG 1 cut(s) 1057
BcnI CCSGG 2 cut(s) 792, 1011
BfaI CTAG 1 cut(s) 953
BfoI RGCGCY 1 cut(s) 519
BfrI CTTAAG 1 cut(s) 641
BfuAI ACCTGC 1 cut(s) 800
BglII AGATCT 1 cut(s) 64
BisI GCNGC 2 cut(s) 5, 888
BlsI GCNGC 2 cut(s) 6, 889
Bme1390I CCNGG 3 cut(s) 792, 1011, 1057
Bme18I GGWCC 1 cut(s) 970
BmgT120I GGNCC 1 cut(s) 970
BmiI GGNNCC 5 cut(s) 757, 971, 972, 1015, 1062
BmrFI CCNGG 3 cut(s) 792, 1011, 1057
BmsI GCATC 3 cut(s) 47, 93, 1036
BpmI CTGGAG 6 cut(s) 150, 213, 276, 339, 402, 618
Bpu14I TTCGAA 1 cut(s) 701
BpuMI CCSGG 2 cut(s) 792, 1011
Bsa29I ATCGAT 1 cut(s) 524
BsaJI CCNNGG 1 cut(s) 1056
BsaXI ACNNNNNCTCC 2 cut(s) 19, 49
Bse1I ACTGG 6 cut(s) 34, 167, 230, 293, 356, 419
BseBI CCWGG 1 cut(s) 1057
BseCI ATCGAT 1 cut(s) 524
BseDI CCNNGG 1 cut(s) 1056
BseGI GGATG 3 cut(s) 84, 451, 768
BseMII CTCAG 1 cut(s) 579
BseNI ACTGG 6 cut(s) 34, 167, 230, 293, 356, 419
BseRI GAGGAG 1 cut(s) 526
BseXI GCAGC 1 cut(s) 899
BshVI ATCGAT 1 cut(s) 524
BsiHKAI GWGCWC 1 cut(s) 115
BsiSI CCGG 2 cut(s) 791, 1011
BslFI GGGAC 2 cut(s) 807, 983
BsmFI GGGAC 2 cut(s) 807, 983
Bsp119I TTCGAA 1 cut(s) 701
Bsp1286I GDGCHC 1 cut(s) 115
Bsp143I GATC 2 cut(s) 64, 525
BspCNI CTCAG 1 cut(s) 580
BspDI ATCGAT 1 cut(s) 524
BspLI GGNNCC 5 cut(s) 757, 971, 972, 1015, 1062
BspMI ACCTGC 1 cut(s) 800
BspPI GGATC 1 cut(s) 520
BspT104I TTCGAA 1 cut(s) 701
BspTI CTTAAG 1 cut(s) 641
BsrI ACTGG 6 cut(s) 34, 167, 230, 293, 356, 419
BssECI CCNNGG 1 cut(s) 1056
BssMI GATC 2 cut(s) 64, 525
BssSI CACGAG 1 cut(s) 507
Bst2BI CACGAG 1 cut(s) 507
Bst2UI CCWGG 1 cut(s) 1057
Bst6I CTCTTC 6 cut(s) 180, 243, 306, 369, 432, 615
BstAFI CTTAAG 1 cut(s) 641
BstAPI GCANNNNNTGC 1 cut(s) 893
BstBI TTCGAA 1 cut(s) 701
BstDEI CTNAG 1 cut(s) 588
BstF5I GGATG 3 cut(s) 84, 451, 768
BstH2I RGCGCY 1 cut(s) 519
BstHHI GCGC 2 cut(s) 518, 665
BstKTI GATC 2 cut(s) 67, 528
BstMBI GATC 2 cut(s) 64, 525
BstMWI GCNNNNNNNGC 2 cut(s) 13, 893
BstNI CCWGG 1 cut(s) 1057
BstSCI CCNGG 3 cut(s) 790, 1009, 1055
BstV1I GCAGC 1 cut(s) 899
BstX2I RGATCY 1 cut(s) 64
BstYI RGATCY 1 cut(s) 64
Bsu15I ATCGAT 1 cut(s) 524
BsuTUI ATCGAT 1 cut(s) 524
BtgZI GCGATG 1 cut(s) 927
BtsCI GGATG 3 cut(s) 84, 451, 768
BtsIMutI CAGTG 3 cut(s) 78, 579, 1041
BveI ACCTGC 1 cut(s) 800
CfoI GCGC 2 cut(s) 518, 665
Cfr13I GGNCC 1 cut(s) 970
ClaI ATCGAT 1 cut(s) 524
CviAII CATG 3 cut(s) 763, 869, 1080
CviJI RGCY 8 cut(s) 494, 580, 596, 632, 706, 758, 890, 1009
CviKI_1 RGCY 8 cut(s) 494, 580, 596, 632, 706, 758, 890, 1009
DdeI CTNAG 1 cut(s) 588
DpnI GATC 2 cut(s) 66, 527
DpnII GATC 2 cut(s) 64, 525
Eam1104I CTCTTC 6 cut(s) 180, 243, 306, 369, 432, 615
EarI CTCTTC 6 cut(s) 180, 243, 306, 369, 432, 615
Eco47I GGWCC 1 cut(s) 970
Eco47III AGCGCT 1 cut(s) 517
Eco57I CTGAAG 1 cut(s) 818
EcoO109I RGGNCCY 1 cut(s) 970
EcoRII CCWGG 1 cut(s) 1055
FaeI CATG 3 cut(s) 766, 872, 1083
FalI AAGNNNNNCTT 2 cut(s) 429, 461
FaqI GGGAC 2 cut(s) 807, 983
FatI CATG 3 cut(s) 762, 868, 1079
FauNDI CATATG 1 cut(s) 981
Fnu4HI GCNGC 2 cut(s) 5, 888
FokI GGATG 3 cut(s) 71, 438, 755
Fsp4HI GCNGC 2 cut(s) 5, 888
FspBI CTAG 1 cut(s) 953
GlaI GCGC 2 cut(s) 517, 664
GluI GCNGC 2 cut(s) 5, 888
GsuI CTGGAG 6 cut(s) 150, 213, 276, 339, 402, 618
HaeII RGCGCY 1 cut(s) 519
HapII CCGG 2 cut(s) 791, 1011
HhaI GCGC 2 cut(s) 518, 665
Hin1II CATG 3 cut(s) 766, 872, 1083
Hin6I GCGC 2 cut(s) 516, 663
HinP1I GCGC 2 cut(s) 516, 663
HincII GTYRAC 1 cut(s) 1000
HindII GTYRAC 1 cut(s) 1000
HindIII AAGCTT 1 cut(s) 704
HinfI GANTC 2 cut(s) 91, 677
HpaII CCGG 2 cut(s) 791, 1011
HphI GGTGA 1 cut(s) 824
Hpy166II GTNNAC 2 cut(s) 76, 1000
Hpy188I TCNGA 4 cut(s) 456, 589, 964, 1065
Hpy188III TCNNGA 4 cut(s) 88, 635, 733, 953
Hpy8I GTNNAC 2 cut(s) 76, 1000
Hpy99I CGWCG 1 cut(s) 739
HpyAV CCTTC 3 cut(s) 541, 919, 997
HpyCH4IV ACGT 3 cut(s) 122, 720, 1002
HpyCH4V TGCA 3 cut(s) 84, 872, 1079
HpyF10VI GCNNNNNNNGC 2 cut(s) 13, 893
HpyF3I CTNAG 1 cut(s) 588
HpySE526I ACGT 3 cut(s) 122, 720, 1002
Hsp92II CATG 3 cut(s) 766, 872, 1083
HspAI GCGC 2 cut(s) 516, 663
KflI GGGWCCC 1 cut(s) 970
Kzo9I GATC 2 cut(s) 64, 525
LmnI GCTCC 2 cut(s) 637, 755
Lsp1109I GCAGC 1 cut(s) 899
LweI GCATC 3 cut(s) 47, 93, 1036
MaeI CTAG 1 cut(s) 953
MaeII ACGT 3 cut(s) 122, 720, 1002
MaeIII GTNAC 2 cut(s) 812, 937
MalI GATC 2 cut(s) 66, 527
MboI GATC 2 cut(s) 64, 525
MboII GAAGA 8 cut(s) 115, 197, 260, 323, 386, 449, 632, 811
MflI RGATCY 1 cut(s) 64
MhlI GDGCHC 1 cut(s) 115
MluCI AATT 4 cut(s) 470, 481, 555, 603
MlyI GAGTC 1 cut(s) 85
MmeI TCCRAC 1 cut(s) 479
MseI TTAA 4 cut(s) 606, 642, 930, 1005
MslI CAYNNNNRTG 2 cut(s) 55, 964
MspCI CTTAAG 1 cut(s) 641
MspI CCGG 2 cut(s) 791, 1011
MspR9I CCNGG 3 cut(s) 792, 1011, 1057
MvaI CCWGG 1 cut(s) 1057
MwoI GCNNNNNNNGC 2 cut(s) 13, 893
NciI CCSGG 2 cut(s) 792, 1011
NdeI CATATG 1 cut(s) 981
NdeII GATC 2 cut(s) 64, 525
NlaIII CATG 3 cut(s) 766, 872, 1083
NlaIV GGNNCC 5 cut(s) 757, 971, 972, 1015, 1062
NmuCI GTSAC 1 cut(s) 812
NspV TTCGAA 1 cut(s) 701
PaqCI CACCTGC 1 cut(s) 800
PfeI GAWTC 1 cut(s) 677
PflFI GACNNNGTC 1 cut(s) 818
PkrI GCNGC 2 cut(s) 6, 889
PleI GAGTC 1 cut(s) 85
PpsI GAGTC 1 cut(s) 85
PpuMI RGGWCCY 1 cut(s) 970
Psp1406I AACGTT 2 cut(s) 720, 1002
Psp5II RGGWCCY 1 cut(s) 970
Psp6I CCWGG 1 cut(s) 1055
PspGI CCWGG 1 cut(s) 1055
PspN4I GGNNCC 5 cut(s) 757, 971, 972, 1015, 1062
PspPI GGNCC 1 cut(s) 970
PspPPI RGGWCCY 1 cut(s) 970
PsuI RGATCY 1 cut(s) 64
PsyI GACNNNGTC 1 cut(s) 818
RseI CAYNNNNRTG 2 cut(s) 55, 964
SaqAI TTAA 4 cut(s) 606, 642, 930, 1005
SatI GCNGC 2 cut(s) 5, 888
Sau3AI GATC 2 cut(s) 64, 525
Sau96I GGNCC 1 cut(s) 970
SchI GAGTC 1 cut(s) 85
ScrFI CCNGG 3 cut(s) 792, 1011, 1057
SduI GDGCHC 1 cut(s) 115
SfaNI GCATC 3 cut(s) 47, 93, 1036
SfuI TTCGAA 1 cut(s) 701
SinI GGWCC 1 cut(s) 970
SmiMI CAYNNNNRTG 2 cut(s) 55, 964
SmlI CTYRAG 1 cut(s) 641
SmoI CTYRAG 1 cut(s) 641
Sse9I AATT 4 cut(s) 470, 481, 555, 603
SspMI CTAG 1 cut(s) 953
StyD4I CCNGG 3 cut(s) 790, 1009, 1055
TaiI ACGT 3 cut(s) 125, 723, 1005
TaqI TCGA 4 cut(s) 524, 618, 701, 734
TasI AATT 4 cut(s) 470, 481, 555, 603
TfiI GAWTC 1 cut(s) 677
Tru1I TTAA 4 cut(s) 606, 642, 930, 1005
Tru9I TTAA 4 cut(s) 606, 642, 930, 1005
TscAI CASTG 3 cut(s) 78, 579, 1048
TseFI GTSAC 1 cut(s) 812
TseI GCWGC 2 cut(s) 4, 887
Tsp45I GTSAC 1 cut(s) 812
TspDTI ATGAA 2 cut(s) 116, 1024
TspGWI ACGGA 2 cut(s) 27, 752
TspRI CASTG 3 cut(s) 78, 579, 1048
Tth111I GACNNNGTC 1 cut(s) 818
Vha464I CTTAAG 1 cut(s) 641
VpaK11BI GGWCC 1 cut(s) 970
XapI RAATTY 2 cut(s) 481, 555
XbaI TCTAGA 1 cut(s) 952
XspI CTAG 1 cut(s) 953
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.