Rmu_sc0000446.1_g000034

Dehydration-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000446.1
OG0000559
Physical Location & Seq
Forward (+)
208212 .. 211169
2958 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000446.1_g000034.1.cds

Sequence Viewer

Length: 945 bp
atggagtactttcgcctcgtttccgtctgcgcttttctctatgtcgcattagcactgttgggaagaagctatgcctctaatgatgtatcatggggttcttactggcagtcagctttcccaaaaactgcgatacccaaaaccctacaagaacttctacatccggacaactggatcgaagggaaaagtagatacactgggttcagcaaggacgatctaaacatcaacaccttgctagtttccggatctgcatttccaactattggtaaagatagctatgctgaggccgcctccggaaaaatccaagtggagccagatgtgactactttctttttagaaaaggatctgcgactggggaagaagatgaccctgcacttccccaaaaccacagttgccgccgagatcttgcctcgtaaagtcgccaagtccatacccttttcgacgagcaagctgccgcagattctcaaccactttgcggtgaaacccaactcagtggaagcagaagtgatcaaacagacgatcgaagactgcgaggcgcccggcatcaaaggggaagacaagtactgcgccacgtcgttggaatccttggtcgattttaccgtttcgaagctcggtaaatacgtgcaggtgtattccacagaggtcgaaaacgaaaacaaacaggaatataagattggaaaaggagctgtgcagcgaattggagacaggtcagtggtttgtcacaagcagaagtacgtgtatgcggttttttattgccatgaaattcactcaactagggcttacgtggttcctttggtgggtgctgatggaactaaagctgaagcgtttaggctggcggcggaggagttgcagtttcctgtttggactctaaaggtgttaatgtttaagattgagcggtggcccaagtatcggttaacgcttgtccgatgggcggaccgctacttatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BURP

Protein Analysis

314

Amino Acids

35.55

Weight (kDa)

8.85

Isoelectric Point (pI)

36.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000559)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25610
fragaria_vesca FvH4_2g36250 FvH4_2g36250 FvH4_2g36250 FvH4_7g14680
malus_domestica MD04G1018200.v1.1 MD08G1119600.v1.1 MD08G1119700.v1.1 MD08G1119800.v1.1 MD08G1199500.v1.1 MD08G1203300.v1.1 MD15G1098800.v1.1 MD15G1219500.v1.1
prunus_persica Prupe.1G453500_v2.0.a1 Prupe.1G453600_v2.0.a1 Prupe.1G453700_v2.0.a1 Prupe.1G465600_v2.0.a1 Prupe.1G475100_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475400_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475800_v2.0.a1 Prupe.1G475900_v2.0.a1 Prupe.1G476200_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476700_v2.0.a1 Prupe.1G477000_v2.0.a1 Prupe.1G477200_v2.0.a1 Prupe.1G477400_v2.0.a1 Prupe.1G477800_v2.0.a1 Prupe.4G169000_v2.0.a1 Prupe.4G257600_v2.0.a1
pyrus_communis pycom08g16760 pycom14g01650 pycom15g09040 pycom15g09070
rosa_chinensis RchiOBHm_Chr1g0356161 RchiOBHm_Chr1g0356461 RchiOBHm_Chr5g0051031
rosa_laevigata RLG00000010869 RLG00000028095 RLG00000028100 RLG00000034755
rosa_multiflora Rmu_co8314191.1_g000001 Rmu_co8337567.1_g000001 Rmu_sc0000281.1_g000019 Rmu_sc0000446.1_g000034 Rmu_sc0000782.1_g000019 Rmu_sc0001809.1_g000027 Rmu_sc0013768.1_g000023
rosa_roxburghii Rroxscaffold_1G00029620 Rroxscaffold_4G00299510 Rroxscaffold_4G00299720 Rroxscaffold_7G00162480
rosa_rugosa Rorug01G0249900 Rorug01G0250000 Rorug05G0572100 Rorug06G0342600
rosa_samantha Rh1AG262800 Rh1AG263300 Rh1AG263600 Rh1BG231500 Rh1CG246400 Rh1CG246900 Rh1DG259200 Rh5AG337800 Rh5BG347500 Rh5CG374800 Rh5DG360600 Rh6BG447100 Rh6CG468100 Rh6DG454900
rosa_wichuraiana Rw1G023250 Rw1G023300 Rw5G031920 Rw6G039620 Rw7G036720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 613
Acc36I ACCTGC 1 cut(s) 613
AccB1I GGYRCC 1 cut(s) 532
AccB7I CCANNNNNTGG 1 cut(s) 260
AccBSI CCGCTC 1 cut(s) 892
AccIII TCCGGA 3 cut(s) 160, 239, 290
AclWI GGATC 3 cut(s) 179, 250, 348
AcsI RAATTY 1 cut(s) 759
AcuI CTGAAG 1 cut(s) 837
AcyI GRCGYC 1 cut(s) 533
AfaI GTAC 3 cut(s) 8, 560, 731
AfiI CCNNNNNNNGG 5 cut(s) 260, 472, 794, 906, 928
AflIII ACRYGT 1 cut(s) 732
AjiI CACGTC 1 cut(s) 570
AjuI GAANNNNNNNTTGG 2 cut(s) 654, 686
AluBI AGCT 7 cut(s) 69, 113, 273, 448, 607, 683, 815
AluI AGCT 7 cut(s) 69, 113, 273, 448, 607, 683, 815
Alw26I GTCTC 1 cut(s) 693
AlwI GGATC 3 cut(s) 179, 250, 348
Aor13HI TCCGGA 3 cut(s) 160, 239, 290
AoxI GGCC 2 cut(s) 282, 896
ApeKI GCWGC 2 cut(s) 448, 688
ApoI RAATTY 1 cut(s) 759
AspLEI GCGC 3 cut(s) 32, 535, 566
AspS9I GGNCC 2 cut(s) 897, 931
AsuC2I CCSGG 1 cut(s) 537
AsuHPI GGTGA 1 cut(s) 487
AsuII TTCGAA 1 cut(s) 602
AvaII GGWCC 1 cut(s) 931
BanI GGYRCC 1 cut(s) 532
BbsI GAAGAC 2 cut(s) 528, 558
BbvCI CCTCAGC 1 cut(s) 279
BbvI GCAGC 2 cut(s) 435, 700
BccI CCATC 2 cut(s) 797, 918
BcgI CGANNNNNNTGC 2 cut(s) 430, 464
BclI TGATCA 1 cut(s) 504
BcnI CCSGG 1 cut(s) 537
BcoDI GTCTC 1 cut(s) 693
BfaI CTAG 2 cut(s) 233, 771
BfoI RGCGCY 1 cut(s) 536
BfuAI ACCTGC 1 cut(s) 613
BglII AGATCT 1 cut(s) 399
BisI GCNGC 6 cut(s) 285, 393, 449, 452, 689, 834
BlsI GCNGC 6 cut(s) 286, 394, 450, 453, 690, 835
BmcAI AGTACT 2 cut(s) 8, 560
Bme1390I CCNGG 1 cut(s) 537
Bme18I GGWCC 1 cut(s) 931
BmgBI CACGTC 1 cut(s) 570
BmgT120I GGNCC 2 cut(s) 897, 931
BmiI GGNNCC 3 cut(s) 309, 534, 786
BmrFI CCNGG 1 cut(s) 537
BmrI ACTGGG 2 cut(s) 204, 359
BmsI GCATC 1 cut(s) 549
BmuI ACTGGG 2 cut(s) 204, 359
BpiI GAAGAC 2 cut(s) 528, 558
BplI GAGNNNNNCTC 2 cut(s) 272, 304
Bpu10I CCTNAGC 1 cut(s) 279
Bpu14I TTCGAA 1 cut(s) 602
BpuMI CCSGG 1 cut(s) 537
BsaAI YACGTR 3 cut(s) 619, 733, 781
BsaHI GRCGYC 1 cut(s) 533
BsaJI CCNNGG 1 cut(s) 582
BsaWI WCCGGW 3 cut(s) 160, 239, 290
BsaXI ACNNNNNCTCC 2 cut(s) 833, 863
Bsc4I CCNNNNNNNGG 5 cut(s) 260, 472, 794, 906, 928
Bse1I ACTGG 4 cut(s) 107, 173, 199, 354
BseAI TCCGGA 3 cut(s) 160, 239, 290
BseDI CCNNGG 1 cut(s) 582
BseGI GGATG 1 cut(s) 157
BseLI CCNNNNNNNGG 5 cut(s) 260, 472, 794, 906, 928
BseMII CTCAG 2 cut(s) 270, 501
BseNI ACTGG 4 cut(s) 107, 173, 199, 354
BseRI GAGGAG 1 cut(s) 854
BseXI GCAGC 2 cut(s) 435, 700
BsgI GTGCAG 3 cut(s) 353, 641, 707
Bsh1285I CGRYCG 1 cut(s) 519
BshFI GGCC 2 cut(s) 284, 898
BshNI GGYRCC 1 cut(s) 532
BsiEI CGRYCG 1 cut(s) 519
BsiSI CCGG 4 cut(s) 161, 240, 291, 537
BslI CCNNNNNNNGG 5 cut(s) 260, 472, 794, 906, 928
BsmAI GTCTC 1 cut(s) 693
BsnI GGCC 2 cut(s) 284, 898
Bsp119I TTCGAA 1 cut(s) 602
Bsp13I TCCGGA 3 cut(s) 160, 239, 290
Bsp143I GATC 7 cut(s) 171, 211, 242, 340, 399, 504, 516
BspANI GGCC 2 cut(s) 284, 898
BspCNI CTCAG 2 cut(s) 271, 500
BspEI TCCGGA 3 cut(s) 160, 239, 290
BspLI GGNNCC 3 cut(s) 309, 534, 786
BspMI ACCTGC 1 cut(s) 613
BspPI GGATC 3 cut(s) 179, 250, 348
BspT104I TTCGAA 1 cut(s) 602
BspT107I GGYRCC 1 cut(s) 532
BsrBI CCGCTC 1 cut(s) 892
BsrI ACTGG 4 cut(s) 107, 173, 199, 354
BssECI CCNNGG 1 cut(s) 582
BssMI GATC 7 cut(s) 171, 211, 242, 340, 399, 504, 516
BssNI GRCGYC 1 cut(s) 533
BssT1I CCWWGG 1 cut(s) 582
Bst4CI ACNGT 3 cut(s) 57, 388, 598
BstACI GRCGYC 1 cut(s) 533
BstBAI YACGTR 3 cut(s) 619, 733, 781
BstBI TTCGAA 1 cut(s) 602
BstC8I GCNNGC 2 cut(s) 446, 831
BstDEI CTNAG 2 cut(s) 279, 487
BstF5I GGATG 1 cut(s) 157
BstH2I RGCGCY 1 cut(s) 536
BstHHI GCGC 3 cut(s) 32, 535, 566
BstKTI GATC 7 cut(s) 174, 214, 245, 343, 402, 507, 519
BstMAI GTCTC 1 cut(s) 693
BstMBI GATC 7 cut(s) 171, 211, 242, 340, 399, 504, 516
BstMCI CGRYCG 1 cut(s) 519
BstMWI GCNNNNNNNGC 1 cut(s) 284
BstSCI CCNGG 1 cut(s) 535
BstV1I GCAGC 2 cut(s) 435, 700
BstV2I GAAGAC 2 cut(s) 528, 558
BstX2I RGATCY 3 cut(s) 242, 340, 399
BstXI CCANNNNNNTGG 2 cut(s) 490, 574
BstYI RGATCY 3 cut(s) 242, 340, 399
BsuRI GGCC 2 cut(s) 284, 898
BtrI CACGTC 1 cut(s) 570
BtsCI GGATG 1 cut(s) 157
BtsIMutI CAGTG 4 cut(s) 53, 192, 495, 714
BveI ACCTGC 1 cut(s) 613
Cac8I GCNNGC 2 cut(s) 446, 831
CfoI GCGC 3 cut(s) 32, 535, 566
Cfr13I GGNCC 2 cut(s) 897, 931
CpoI CGGWCCG 1 cut(s) 931
Csp6I GTAC 3 cut(s) 7, 559, 730
CspI CGGWCCG 1 cut(s) 931
CviAII CATG 2 cut(s) 90, 755
CviQI GTAC 3 cut(s) 7, 559, 730
DdeI CTNAG 2 cut(s) 279, 487
DinI GGCGCC 1 cut(s) 534
DpnI GATC 7 cut(s) 173, 213, 244, 342, 401, 506, 518
DpnII GATC 7 cut(s) 171, 211, 242, 340, 399, 504, 516
EciI GGCGGA 2 cut(s) 851, 944
Eco130I CCWWGG 1 cut(s) 582
Eco47I GGWCC 1 cut(s) 931
Eco57I CTGAAG 1 cut(s) 837
EcoT14I CCWWGG 1 cut(s) 582
EgeI GGCGCC 1 cut(s) 534
EheI GGCGCC 1 cut(s) 534
ErhI CCWWGG 1 cut(s) 582
FaeI CATG 2 cut(s) 93, 758
FaiI YATR 9 cut(s) 42, 72, 91, 276, 428, 666, 738, 756, 943
FatI CATG 2 cut(s) 89, 754
FbaI TGATCA 1 cut(s) 504
Fnu4HI GCNGC 6 cut(s) 285, 393, 449, 452, 689, 834
FokI GGATG 1 cut(s) 144
Fsp4HI GCNGC 6 cut(s) 285, 393, 449, 452, 689, 834
FspBI CTAG 2 cut(s) 233, 771
GlaI GCGC 3 cut(s) 31, 534, 565
GluI GCNGC 6 cut(s) 285, 393, 449, 452, 689, 834
HaeII RGCGCY 1 cut(s) 536
HaeIII GGCC 2 cut(s) 284, 898
HapII CCGG 4 cut(s) 161, 240, 291, 537
HhaI GCGC 3 cut(s) 32, 535, 566
Hin1I GRCGYC 1 cut(s) 533
Hin1II CATG 2 cut(s) 93, 758
Hin6I GCGC 3 cut(s) 30, 533, 564
HinP1I GCGC 3 cut(s) 30, 533, 564
HincII GTYRAC 1 cut(s) 912
HindII GTYRAC 1 cut(s) 912
HinfI GANTC 3 cut(s) 457, 578, 862
HpaI GTTAAC 1 cut(s) 912
HpaII CCGG 4 cut(s) 161, 240, 291, 537
HphI GGTGA 1 cut(s) 487
Hpy166II GTNNAC 1 cut(s) 912
Hpy188I TCNGA 1 cut(s) 923
Hpy188III TCNNGA 3 cut(s) 161, 240, 291
Hpy8I GTNNAC 1 cut(s) 912
Hpy99I CGWCG 2 cut(s) 442, 574
HpyAV CCTTC 1 cut(s) 170
HpyCH4III ACNGT 3 cut(s) 57, 388, 598
HpyCH4IV ACGT 4 cut(s) 569, 618, 732, 780
HpyCH4V TGCA 5 cut(s) 248, 370, 622, 688, 847
HpyF10VI GCNNNNNNNGC 1 cut(s) 284
HpyF3I CTNAG 2 cut(s) 279, 487
HpySE526I ACGT 4 cut(s) 569, 618, 732, 780
Hsp92I GRCGYC 1 cut(s) 533
Hsp92II CATG 2 cut(s) 93, 758
HspAI GCGC 3 cut(s) 30, 533, 564
KasI GGCGCC 1 cut(s) 532
Kpn2I TCCGGA 3 cut(s) 160, 239, 290
Ksp22I TGATCA 1 cut(s) 504
KspAI GTTAAC 1 cut(s) 912
Kzo9I GATC 7 cut(s) 171, 211, 242, 340, 399, 504, 516
LmnI GCTCC 2 cut(s) 307, 680
Lsp1109I GCAGC 2 cut(s) 435, 700
LweI GCATC 1 cut(s) 549
MaeI CTAG 2 cut(s) 233, 771
MaeII ACGT 4 cut(s) 569, 618, 732, 780
MaeIII GTNAC 2 cut(s) 316, 716
MalI GATC 7 cut(s) 173, 213, 244, 342, 401, 506, 518
MbiI CCGCTC 1 cut(s) 892
MboI GATC 7 cut(s) 171, 211, 242, 340, 399, 504, 516
MboII GAAGA 5 cut(s) 75, 367, 370, 533, 563
MflI RGATCY 3 cut(s) 242, 340, 399
MluCI AATT 2 cut(s) 693, 759
Mly113I GGCGCC 1 cut(s) 533
MlyI GAGTC 1 cut(s) 856
MmeI TCCRAC 2 cut(s) 278, 555
MnlI CCTC 8 cut(s) 26, 85, 274, 298, 417, 523, 631, 832
MroI TCCGGA 3 cut(s) 160, 239, 290
MseI TTAA 3 cut(s) 875, 882, 911
MspI CCGG 4 cut(s) 161, 240, 291, 537
MspR9I CCNGG 1 cut(s) 537
MwoI GCNNNNNNNGC 1 cut(s) 284
NarI GGCGCC 1 cut(s) 533
NciI CCSGG 1 cut(s) 537
NdeII GATC 7 cut(s) 171, 211, 242, 340, 399, 504, 516
NlaIII CATG 2 cut(s) 93, 758
NlaIV GGNNCC 3 cut(s) 309, 534, 786
NmeAIII GCCGAG 1 cut(s) 421
NmuCI GTSAC 2 cut(s) 316, 716
NspV TTCGAA 1 cut(s) 602
PaqCI CACCTGC 1 cut(s) 613
PcsI WCGNNNNNNNCGW 3 cut(s) 525, 594, 615
PfeI GAWTC 2 cut(s) 457, 578
PflMI CCANNNNNTGG 1 cut(s) 260
PkrI GCNGC 6 cut(s) 286, 394, 450, 453, 690, 835
Ple19I CGATCG 1 cut(s) 519
PleI GAGTC 1 cut(s) 856
PluTI GGCGCC 1 cut(s) 536
PpsI GAGTC 1 cut(s) 856
Ppu21I YACGTR 3 cut(s) 619, 733, 781
PspN4I GGNNCC 3 cut(s) 309, 534, 786
PspPI GGNCC 2 cut(s) 897, 931
PsuI RGATCY 3 cut(s) 242, 340, 399
PvuI CGATCG 1 cut(s) 519
RsaI GTAC 3 cut(s) 8, 560, 731
RsaNI GTAC 3 cut(s) 7, 559, 730
Rsr2I CGGWCCG 1 cut(s) 931
RsrII CGGWCCG 1 cut(s) 931
SaqAI TTAA 3 cut(s) 875, 882, 911
SatI GCNGC 6 cut(s) 285, 393, 449, 452, 689, 834
Sau3AI GATC 7 cut(s) 171, 211, 242, 340, 399, 504, 516
Sau96I GGNCC 2 cut(s) 897, 931
ScaI AGTACT 2 cut(s) 8, 560
SchI GAGTC 1 cut(s) 856
ScrFI CCNGG 1 cut(s) 537
SfaNI GCATC 1 cut(s) 549
SfoI GGCGCC 1 cut(s) 534
SfuI TTCGAA 1 cut(s) 602
SinI GGWCC 1 cut(s) 931
Sse9I AATT 2 cut(s) 693, 759
SspDI GGCGCC 1 cut(s) 532
SspMI CTAG 2 cut(s) 233, 771
StyD4I CCNGG 1 cut(s) 535
StyI CCWWGG 1 cut(s) 582
TaaI ACNGT 3 cut(s) 57, 388, 598
TaiI ACGT 4 cut(s) 572, 621, 735, 783
TaqI TCGA 6 cut(s) 174, 437, 519, 588, 602, 642
TasI AATT 2 cut(s) 693, 759
TatI WGTACW 2 cut(s) 6, 558
TauI GCSGC 4 cut(s) 287, 395, 454, 836
TfiI GAWTC 2 cut(s) 457, 578
Tru1I TTAA 3 cut(s) 875, 882, 911
Tru9I TTAA 3 cut(s) 875, 882, 911
TscAI CASTG 4 cut(s) 60, 199, 495, 714
TseFI GTSAC 2 cut(s) 316, 716
TseI GCWGC 2 cut(s) 448, 688
Tsp45I GTSAC 2 cut(s) 316, 716
TspDTI ATGAA 1 cut(s) 771
TspGWI ACGGA 1 cut(s) 13
TspRI CASTG 4 cut(s) 60, 199, 495, 714
Van91I CCANNNNNTGG 1 cut(s) 260
VpaK11BI GGWCC 1 cut(s) 931
XapI RAATTY 1 cut(s) 759
XspI CTAG 2 cut(s) 233, 771
ZrmI AGTACT 2 cut(s) 8, 560
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.