MD15G1098800.v1.1

BURP domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0000559
Physical Location & Seq
Forward (+)
6882296 .. 6884745
2450 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1098800.v1.1.491

Sequence Viewer

Length: 1152 bp
ATGGGGTTCTGTCTTCCTCACATCCTTGCTTTTCTAACTCTCACACTGGTGGCATGCCATGCTGCTCTACCACCTCAACTTTACTGGAACTCTGTCTTGCCAAACTCAAAAATGCCAAAAGCTATCAGTGAACTTCTCCAGCATTTCACAGAGGATAAGAGCACCTCTGTTGTAGTAGGAAAGGGTGGTGTCAACGTTGATGCAGGAAAAGGAAAGCCCGGAGGCACCCATGTCGATGTTGGGAAGGGTACTGGAGTGCATGTGGAAGCCGGAAAAGGAAAGCCAGGCGGTGGCACTAACGTGAACGTAGGAGGCAAAGGCGGTACTGGGGTGAACACCGGGAAGGGAACCAACGTTGGTGTTGGCAAAGGAGGAGTGTCCGTAAACACAGGGCACAAGGGAAAGCCCGTGTATGTTGGAGTAAAACCAGGACCAGACCCTTTTAACTACCAGTATGCAGCCACCGAAACCCAACTCCATCAAGACCCAAACGTTGCTATTTTCTTCTTGGAGAAAGACATGCGTCCTGGAACAACAATGAACTTGCACTTCACCACAAATTCAAACACGCAAACTTTTGTGCCGCGCGAAACTGCGGAATCCATCCCATTTTCGTCCAACAAGCTGCCAGAAATCTTCAACCAATTTTCAGTGAAATCGGGTTCCGTGGAAGCGGATATAATCAAGGGTACAATTCAAGAGTGTGAGAATCCAGCCATTAGAGGAGAGGAGAAATATTGTGCTACCTCTTTGGAGTCCATGATTGACTTTAGCACTTCTAAGCTTGGAGGAGGAAATGTTCGAGCAATTTCGACAGAAGCCGGAAAAGGAGCTACATTGCAGAAGTACACAATAACTTCTGGAGTGAAGAAGTTGGCGGCGGATAAGTCGGTCGTGTGTCACAAGCAGAACTATCCCTATGCTGTCTTTTACTGCCATGCAACAAAAACAACAAGAGCTTATGTGGTGCCCCTGAAAGGTGCTGATGGGGTGAATGTTAAAGCAGTAGCAGTCTGCCATACAGACACATCGGAGTGGAACCCTAATCATTTGGCCTTCCAAGTTCTCAAAGTTAAGCCGGGAACTGTTCCGGTCTGCCATTTCCTTCCCAGTGATCATGTTGTCTGGGTTCCAAACCAGAAATCTACCTGA

Protein Analysis

384

Amino Acids

40.56

Weight (kDa)

9.08

Isoelectric Point (pI)

25.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BURP PF03181 167 - 378 2.1e-90 BURP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000559)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25610
fragaria_vesca FvH4_2g36250 FvH4_2g36250 FvH4_2g36250 FvH4_7g14680
malus_domestica MD04G1018200.v1.1 MD08G1119600.v1.1 MD08G1119700.v1.1 MD08G1119800.v1.1 MD08G1199500.v1.1 MD08G1203300.v1.1 MD15G1098800.v1.1 MD15G1219500.v1.1
prunus_persica Prupe.1G453500_v2.0.a1 Prupe.1G453600_v2.0.a1 Prupe.1G453700_v2.0.a1 Prupe.1G465600_v2.0.a1 Prupe.1G475100_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475400_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475800_v2.0.a1 Prupe.1G475900_v2.0.a1 Prupe.1G476200_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476700_v2.0.a1 Prupe.1G477000_v2.0.a1 Prupe.1G477200_v2.0.a1 Prupe.1G477400_v2.0.a1 Prupe.1G477800_v2.0.a1 Prupe.4G169000_v2.0.a1 Prupe.4G257600_v2.0.a1
pyrus_communis pycom08g16760 pycom14g01650 pycom15g09040 pycom15g09070
rosa_chinensis RchiOBHm_Chr1g0356161 RchiOBHm_Chr1g0356461 RchiOBHm_Chr5g0051031
rosa_laevigata RLG00000010869 RLG00000028095 RLG00000028100 RLG00000034755
rosa_multiflora Rmu_co8314191.1_g000001 Rmu_co8337567.1_g000001 Rmu_sc0000281.1_g000019 Rmu_sc0000446.1_g000034 Rmu_sc0000782.1_g000019 Rmu_sc0001809.1_g000027 Rmu_sc0013768.1_g000023
rosa_roxburghii Rroxscaffold_1G00029620 Rroxscaffold_4G00299510 Rroxscaffold_4G00299720 Rroxscaffold_7G00162480
rosa_rugosa Rorug01G0249900 Rorug01G0250000 Rorug05G0572100 Rorug06G0342600
rosa_samantha Rh1AG262800 Rh1AG263300 Rh1AG263600 Rh1BG231500 Rh1CG246400 Rh1CG246900 Rh1DG259200 Rh5AG337800 Rh5BG347500 Rh5CG374800 Rh5DG360600 Rh6BG447100 Rh6CG468100 Rh6DG454900
rosa_wichuraiana Rw1G023250 Rw1G023300 Rw5G031920 Rw6G039620 Rw7G036720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 224, 967
AccB7I CCANNNNNTGG 1 cut(s) 290
AccII CGCG 2 cut(s) 586, 588
AciI CCGC 7 cut(s) 288, 321, 584, 596, 674, 878, 881
AclI AACGTT 3 cut(s) 195, 354, 492
AcsI RAATTY 1 cut(s) 559
AfaI GTAC 4 cut(s) 250, 325, 691, 848
AfiI CCNNNNNNNGG 2 cut(s) 290, 977
AgsI TTSAA 3 cut(s) 564, 640, 698
AjnI CCWGG 3 cut(s) 283, 427, 526
AleI CACNNNNGTG 2 cut(s) 47, 299
AloI GAACNNNNNNTCC 2 cut(s) 783, 815
AluBI AGCT 5 cut(s) 122, 625, 784, 833, 959
AluI AGCT 5 cut(s) 122, 625, 784, 833, 959
Alw21I GWGCWC 1 cut(s) 164
AoxI GGCC 1 cut(s) 1053
ApeKI GCWGC 3 cut(s) 62, 458, 625
ApoI RAATTY 1 cut(s) 559
AspLEI GCGC 1 cut(s) 588
AspS9I GGNCC 1 cut(s) 431
AsuC2I CCSGG 3 cut(s) 219, 340, 1080
AsuHPI GGTGA 3 cut(s) 343, 544, 1003
AvaII GGWCC 1 cut(s) 431
BaeGI GKGCMC 2 cut(s) 396, 972
BaeI ACNNNNGTAYC 4 cut(s) 240, 273, 315, 348
BanI GGYRCC 2 cut(s) 224, 967
BbsI GAAGAC 1 cut(s) 5
Bbv12I GWGCWC 1 cut(s) 164
BbvI GCAGC 3 cut(s) 49, 470, 612
BccI CCATC 3 cut(s) 486, 611, 980
BcgI CGANNNNNNTGC 2 cut(s) 214, 248
BciT130I CCWGG 3 cut(s) 285, 429, 528
BclI TGATCA 1 cut(s) 1114
BcnI CCSGG 3 cut(s) 219, 340, 1080
BisI GCNGC 5 cut(s) 63, 459, 584, 626, 879
BlsI GCNGC 5 cut(s) 64, 460, 585, 627, 880
Bme1390I CCNGG 6 cut(s) 219, 285, 340, 429, 528, 1080
Bme18I GGWCC 1 cut(s) 431
BmgT120I GGNCC 1 cut(s) 431
BmiI GGNNCC 6 cut(s) 226, 349, 664, 969, 1040, 1131
BmrFI CCNGG 6 cut(s) 219, 285, 340, 429, 528, 1080
BmrI ACTGGG 2 cut(s) 336, 1104
BmsI GCATC 1 cut(s) 190
BmuI ACTGGG 2 cut(s) 336, 1104
BoxI GACNNNNGTC 1 cut(s) 522
BpiI GAAGAC 1 cut(s) 5
BpmI CTGGAG 3 cut(s) 122, 273, 882
BpuMI CCSGG 3 cut(s) 219, 340, 1080
BsaJI CCNNGG 1 cut(s) 666
BsaWI WCCGGW 1 cut(s) 1090
BsaXI ACNNNNNCTCC 6 cut(s) 246, 276, 366, 396, 783, 813
Bsc4I CCNNNNNNNGG 2 cut(s) 290, 977
Bse1I ACTGG 6 cut(s) 51, 89, 256, 331, 451, 1110
Bse3DI GCAATG 1 cut(s) 836
BseBI CCWGG 3 cut(s) 285, 429, 528
BseDI CCNNGG 1 cut(s) 666
BseGI GGATG 2 cut(s) 21, 603
BseLI CCNNNNNNNGG 2 cut(s) 290, 977
BseMI GCAATG 1 cut(s) 836
BseNI ACTGG 6 cut(s) 51, 89, 256, 331, 451, 1110
BseRI GAGGAG 4 cut(s) 387, 738, 743, 804
BseSI GKGCMC 2 cut(s) 396, 972
BseXI GCAGC 3 cut(s) 49, 470, 612
Bsh1236I CGCG 2 cut(s) 586, 588
Bsh1285I CGRYCG 1 cut(s) 894
BshFI GGCC 1 cut(s) 1055
BshNI GGYRCC 2 cut(s) 224, 967
BsiEI CGRYCG 1 cut(s) 894
BsiHKAI GWGCWC 1 cut(s) 164
BsiSI CCGG 6 cut(s) 219, 270, 339, 822, 1079, 1091
BslI CCNNNNNNNGG 2 cut(s) 290, 977
BsnI GGCC 1 cut(s) 1055
Bsp1286I GDGCHC 3 cut(s) 164, 396, 972
Bsp143I GATC 1 cut(s) 1114
BspACI CCGC 7 cut(s) 288, 321, 584, 596, 674, 878, 881
BspANI GGCC 1 cut(s) 1055
BspFNI CGCG 2 cut(s) 586, 588
BspLI GGNNCC 6 cut(s) 226, 349, 664, 969, 1040, 1131
BspT107I GGYRCC 2 cut(s) 224, 967
BsrDI GCAATG 1 cut(s) 836
BsrI ACTGG 6 cut(s) 51, 89, 256, 331, 451, 1110
BssECI CCNNGG 1 cut(s) 666
BssMI GATC 1 cut(s) 1114
Bst2UI CCWGG 3 cut(s) 285, 429, 528
Bst4CI ACNGT 1 cut(s) 1087
BstAPI GCANNNNNTGC 1 cut(s) 59
BstC8I GCNNGC 1 cut(s) 55
BstDEI CTNAG 1 cut(s) 780
BstDSI CCRYGG 1 cut(s) 666
BstF5I GGATG 2 cut(s) 21, 603
BstFNI CGCG 2 cut(s) 586, 588
BstHHI GCGC 1 cut(s) 588
BstKTI GATC 1 cut(s) 1117
BstMBI GATC 1 cut(s) 1114
BstMCI CGRYCG 1 cut(s) 894
BstMWI GCNNNNNNNGC 1 cut(s) 59
BstNI CCWGG 3 cut(s) 285, 429, 528
BstNSI RCATGY 3 cut(s) 57, 263, 523
BstPAI GACNNNNGTC 1 cut(s) 522
BstSCI CCNGG 6 cut(s) 217, 283, 338, 427, 526, 1078
BstSLI GKGCMC 2 cut(s) 396, 972
BstUI CGCG 2 cut(s) 586, 588
BstV1I GCAGC 3 cut(s) 49, 470, 612
BstV2I GAAGAC 1 cut(s) 5
BsuRI GGCC 1 cut(s) 1055
BtgI CCRYGG 1 cut(s) 666
BtsCI GGATG 2 cut(s) 21, 603
BtsIMutI CAGTG 4 cut(s) 44, 133, 657, 1117
Cac8I GCNNGC 1 cut(s) 55
CfoI GCGC 1 cut(s) 588
Cfr13I GGNCC 1 cut(s) 431
CseI GACGC 1 cut(s) 512
Csp6I GTAC 4 cut(s) 249, 324, 690, 847
CviAII CATG 8 cut(s) 54, 59, 230, 260, 520, 760, 938, 1118
CviQI GTAC 4 cut(s) 249, 324, 690, 847
DdeI CTNAG 1 cut(s) 780
DpnI GATC 1 cut(s) 1116
DpnII GATC 1 cut(s) 1114
EciI GGCGGA 1 cut(s) 896
Eco47I GGWCC 1 cut(s) 431
EcoRII CCWGG 3 cut(s) 283, 427, 526
FaeI CATG 8 cut(s) 57, 62, 233, 263, 523, 763, 941, 1121
FatI CATG 8 cut(s) 53, 58, 229, 259, 519, 759, 937, 1117
FbaI TGATCA 1 cut(s) 1114
Fnu4HI GCNGC 5 cut(s) 63, 459, 584, 626, 879
FokI GGATG 2 cut(s) 8, 590
Fsp4HI GCNGC 5 cut(s) 63, 459, 584, 626, 879
GlaI GCGC 1 cut(s) 587
GluI GCNGC 5 cut(s) 63, 459, 584, 626, 879
GsuI CTGGAG 3 cut(s) 122, 273, 882
HaeIII GGCC 1 cut(s) 1055
HapII CCGG 6 cut(s) 219, 270, 339, 822, 1079, 1091
HgaI GACGC 1 cut(s) 512
HhaI GCGC 1 cut(s) 588
Hin1II CATG 8 cut(s) 57, 62, 233, 263, 523, 763, 941, 1121
Hin6I GCGC 1 cut(s) 586
HinP1I GCGC 1 cut(s) 586
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HindIII AAGCTT 1 cut(s) 782
HinfI GANTC 3 cut(s) 599, 709, 755
HpaII CCGG 6 cut(s) 219, 270, 339, 822, 1079, 1091
HphI GGTGA 3 cut(s) 343, 544, 1003
Hpy166II GTNNAC 6 cut(s) 131, 193, 304, 334, 385, 849
Hpy188I TCNGA 1 cut(s) 1033
Hpy188III TCNNGA 3 cut(s) 482, 698, 861
Hpy8I GTNNAC 6 cut(s) 131, 193, 304, 334, 385, 849
HpyAV CCTTC 4 cut(s) 238, 337, 1066, 1115
HpyCH4III ACNGT 1 cut(s) 1087
HpyCH4IV ACGT 5 cut(s) 195, 300, 306, 354, 492
HpyCH4V TGCA 6 cut(s) 203, 259, 458, 547, 841, 941
HpyF10VI GCNNNNNNNGC 1 cut(s) 59
HpyF3I CTNAG 1 cut(s) 780
HpySE526I ACGT 5 cut(s) 195, 300, 306, 354, 492
Hsp92II CATG 8 cut(s) 57, 62, 233, 263, 523, 763, 941, 1121
HspAI GCGC 1 cut(s) 586
Ksp22I TGATCA 1 cut(s) 1114
Kzo9I GATC 1 cut(s) 1114
LmnI GCTCC 1 cut(s) 830
Lsp1109I GCAGC 3 cut(s) 49, 470, 612
LweI GCATC 1 cut(s) 190
MaeII ACGT 5 cut(s) 195, 300, 306, 354, 492
MaeIII GTNAC 1 cut(s) 899
MalI GATC 1 cut(s) 1116
MboI GATC 1 cut(s) 1114
MboII GAAGA 4 cut(s) 5, 496, 628, 880
MhlI GDGCHC 3 cut(s) 164, 396, 972
MluCI AATT 4 cut(s) 559, 644, 693, 807
MlyI GAGTC 1 cut(s) 764
MmeI TCCRAC 2 cut(s) 397, 642
MseI TTAA 3 cut(s) 444, 999, 1074
MslI CAYNNNNRTG 4 cut(s) 47, 234, 299, 1033
MspI CCGG 6 cut(s) 219, 270, 339, 822, 1079, 1091
MspR9I CCNGG 6 cut(s) 219, 285, 340, 429, 528, 1080
MvaI CCWGG 3 cut(s) 285, 429, 528
MvnI CGCG 2 cut(s) 586, 588
MwoI GCNNNNNNNGC 1 cut(s) 59
NciI CCSGG 3 cut(s) 219, 340, 1080
NdeII GATC 1 cut(s) 1114
NlaIII CATG 8 cut(s) 57, 62, 233, 263, 523, 763, 941, 1121
NlaIV GGNNCC 6 cut(s) 226, 349, 664, 969, 1040, 1131
NmuCI GTSAC 1 cut(s) 899
NspI RCATGY 3 cut(s) 57, 263, 523
OliI CACNNNNGTG 2 cut(s) 47, 299
PaeI GCATGC 1 cut(s) 57
PfeI GAWTC 2 cut(s) 599, 709
PflMI CCANNNNNTGG 1 cut(s) 290
PfoI TCCNGGA 1 cut(s) 526
PkrI GCNGC 5 cut(s) 64, 460, 585, 627, 880
PleI GAGTC 1 cut(s) 763
PpsI GAGTC 1 cut(s) 763
PshAI GACNNNNGTC 1 cut(s) 522
Psp1406I AACGTT 3 cut(s) 195, 354, 492
Psp6I CCWGG 3 cut(s) 283, 427, 526
PspGI CCWGG 3 cut(s) 283, 427, 526
PspN4I GGNNCC 6 cut(s) 226, 349, 664, 969, 1040, 1131
PspPI GGNCC 1 cut(s) 431
RsaI GTAC 4 cut(s) 250, 325, 691, 848
RsaNI GTAC 4 cut(s) 249, 324, 690, 847
RseI CAYNNNNRTG 4 cut(s) 47, 234, 299, 1033
SaqAI TTAA 3 cut(s) 444, 999, 1074
SatI GCNGC 5 cut(s) 63, 459, 584, 626, 879
Sau3AI GATC 1 cut(s) 1114
Sau96I GGNCC 1 cut(s) 431
SchI GAGTC 1 cut(s) 764
ScrFI CCNGG 6 cut(s) 219, 285, 340, 429, 528, 1080
SduI GDGCHC 3 cut(s) 164, 396, 972
SfaNI GCATC 1 cut(s) 190
SinI GGWCC 1 cut(s) 431
SmiMI CAYNNNNRTG 4 cut(s) 47, 234, 299, 1033
SphI GCATGC 1 cut(s) 57
Sse9I AATT 4 cut(s) 559, 644, 693, 807
SsiI CCGC 7 cut(s) 288, 321, 584, 596, 674, 878, 881
SspI AATATT 1 cut(s) 737
StyD4I CCNGG 6 cut(s) 217, 283, 338, 427, 526, 1078
TaaI ACNGT 1 cut(s) 1087
TaiI ACGT 5 cut(s) 198, 303, 309, 357, 495
TaqI TCGA 3 cut(s) 234, 802, 812
TaqII GACCGA 1 cut(s) 880
TasI AATT 4 cut(s) 559, 644, 693, 807
TatI WGTACW 1 cut(s) 846
TauI GCSGC 2 cut(s) 586, 881
TfiI GAWTC 2 cut(s) 599, 709
Tru1I TTAA 3 cut(s) 444, 999, 1074
Tru9I TTAA 3 cut(s) 444, 999, 1074
TscAI CASTG 4 cut(s) 51, 133, 657, 1117
TseFI GTSAC 1 cut(s) 899
TseI GCWGC 3 cut(s) 62, 458, 625
Tsp45I GTSAC 1 cut(s) 899
TspDTI ATGAA 1 cut(s) 554
TspGWI ACGGA 2 cut(s) 370, 655
TspRI CASTG 4 cut(s) 51, 133, 657, 1117
Van91I CCANNNNNTGG 1 cut(s) 290
VpaK11BI GGWCC 1 cut(s) 431
XapI RAATTY 1 cut(s) 559
XceI RCATGY 3 cut(s) 57, 263, 523
XcmI CCANNNNNNNNNTGG 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.