Prupe.1G476700_v2.0.a1

BURP domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000559
Physical Location & Seq
Forward (+)
39848120 .. 39849058
939 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G476700.1

Sequence Viewer

Length: 441 bp
ATGCGCCCTGGCTCAACAATGAAGTTCCAATTCCCTAGAAATTCAAACACGGCTACTTTCCTGCCACGCGAAAGTGCTCAATCGATCCCCTTCTCCTTTAACAAACTACCAGAAATTTTCAACCATTTTTCAGTGAAGCCAACATCTGTGGAAGCCAAAACAATTAAGCAAACAATCGAAGAGTGTGAAGCTCCAGGCATTAAGGGAGATGAAAAATATTGCGCCACATCTTTAGAATCAATGGTTGATTTTAGCACTTCGAAGCTTGGAACAAGAAACGTTGAAGCAGTCTCGACGGAGGTATTGGAAAAAGGAGCCACCATGTCCATGCACAACTATACAACAATGCCGGGACTGAAGAAGTTGGCAGGTGACAAAGTCGTTGTGTGTCATAAGGAGAACTATCCCTATGCTATGCTATGTTTTTCTGCCATGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BURP

Protein Analysis

147

Amino Acids

16.25

Weight (kDa)

8.33

Isoelectric Point (pI)

44.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000559)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25610
fragaria_vesca FvH4_2g36250 FvH4_2g36250 FvH4_2g36250 FvH4_7g14680
malus_domestica MD04G1018200.v1.1 MD08G1119600.v1.1 MD08G1119700.v1.1 MD08G1119800.v1.1 MD08G1199500.v1.1 MD08G1203300.v1.1 MD15G1098800.v1.1 MD15G1219500.v1.1
prunus_persica Prupe.1G453500_v2.0.a1 Prupe.1G453600_v2.0.a1 Prupe.1G453700_v2.0.a1 Prupe.1G465600_v2.0.a1 Prupe.1G475100_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475400_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475800_v2.0.a1 Prupe.1G475900_v2.0.a1 Prupe.1G476200_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476700_v2.0.a1 Prupe.1G477000_v2.0.a1 Prupe.1G477200_v2.0.a1 Prupe.1G477400_v2.0.a1 Prupe.1G477800_v2.0.a1 Prupe.4G169000_v2.0.a1 Prupe.4G257600_v2.0.a1
pyrus_communis pycom08g16760 pycom14g01650 pycom15g09040 pycom15g09070
rosa_chinensis RchiOBHm_Chr1g0356161 RchiOBHm_Chr1g0356461 RchiOBHm_Chr5g0051031
rosa_laevigata RLG00000010869 RLG00000028095 RLG00000028100 RLG00000034755
rosa_multiflora Rmu_co8314191.1_g000001 Rmu_co8337567.1_g000001 Rmu_sc0000281.1_g000019 Rmu_sc0000446.1_g000034 Rmu_sc0000782.1_g000019 Rmu_sc0001809.1_g000027 Rmu_sc0013768.1_g000023
rosa_roxburghii Rroxscaffold_1G00029620 Rroxscaffold_4G00299510 Rroxscaffold_4G00299720 Rroxscaffold_7G00162480
rosa_rugosa Rorug01G0249900 Rorug01G0250000 Rorug05G0572100 Rorug06G0342600
rosa_samantha Rh1AG262800 Rh1AG263300 Rh1AG263600 Rh1BG231500 Rh1CG246400 Rh1CG246900 Rh1DG259200 Rh5AG337800 Rh5BG347500 Rh5CG374800 Rh5DG360600 Rh6BG447100 Rh6CG468100 Rh6DG454900
rosa_wichuraiana Rw1G023250 Rw1G023300 Rw5G031920 Rw6G039620 Rw7G036720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 359
Acc36I ACCTGC 1 cut(s) 359
AccII CGCG 1 cut(s) 69
AclI AACGTT 1 cut(s) 279
AclWI GGATC 1 cut(s) 79
AcsI RAATTY 2 cut(s) 40, 114
AcuI CTGAAG 1 cut(s) 377
AgsI TTSAA 3 cut(s) 45, 121, 284
AjnI CCWGG 2 cut(s) 7, 193
AluBI AGCT 2 cut(s) 191, 265
AluI AGCT 2 cut(s) 191, 265
Alw21I GWGCWC 1 cut(s) 79
Alw26I GTCTC 1 cut(s) 295
AlwI GGATC 1 cut(s) 79
ApoI RAATTY 2 cut(s) 40, 114
AspLEI GCGC 2 cut(s) 6, 224
AsuC2I CCSGG 1 cut(s) 351
AsuHPI GGTGA 1 cut(s) 383
AsuII TTCGAA 1 cut(s) 260
Bbv12I GWGCWC 1 cut(s) 79
BceAI ACGGC 1 cut(s) 66
BciT130I CCWGG 2 cut(s) 9, 195
BcnI CCSGG 1 cut(s) 351
BcoDI GTCTC 1 cut(s) 295
BfaI CTAG 1 cut(s) 36
BfuAI ACCTGC 1 cut(s) 359
Bme1390I CCNGG 3 cut(s) 9, 195, 351
BmiI GGNNCC 1 cut(s) 316
BmrFI CCNGG 3 cut(s) 9, 195, 351
BpmI CTGGAG 1 cut(s) 177
Bpu14I TTCGAA 1 cut(s) 260
BpuMI CCSGG 1 cut(s) 351
Bsa29I ATCGAT 1 cut(s) 83
BsaJI CCNNGG 1 cut(s) 7
BseBI CCWGG 2 cut(s) 9, 195
BseCI ATCGAT 1 cut(s) 83
BseDI CCNNGG 1 cut(s) 7
Bsh1236I CGCG 1 cut(s) 69
BshVI ATCGAT 1 cut(s) 83
BsiHKAI GWGCWC 1 cut(s) 79
BsiSI CCGG 1 cut(s) 350
BslFI GGGAC 1 cut(s) 366
BsmAI GTCTC 1 cut(s) 295
BsmFI GGGAC 1 cut(s) 366
Bsp119I TTCGAA 1 cut(s) 260
Bsp1286I GDGCHC 1 cut(s) 79
Bsp143I GATC 1 cut(s) 84
BspDI ATCGAT 1 cut(s) 83
BspFNI CGCG 1 cut(s) 69
BspLI GGNNCC 1 cut(s) 316
BspMI ACCTGC 1 cut(s) 359
BspPI GGATC 1 cut(s) 79
BspT104I TTCGAA 1 cut(s) 260
BssECI CCNNGG 1 cut(s) 7
BssMI GATC 1 cut(s) 84
Bst2UI CCWGG 2 cut(s) 9, 195
Bst6I CTCTTC 1 cut(s) 174
BstBI TTCGAA 1 cut(s) 260
BstFNI CGCG 1 cut(s) 69
BstHHI GCGC 2 cut(s) 6, 224
BstKTI GATC 1 cut(s) 87
BstMAI GTCTC 1 cut(s) 295
BstMBI GATC 1 cut(s) 84
BstNI CCWGG 2 cut(s) 9, 195
BstSCI CCNGG 3 cut(s) 7, 193, 349
BstUI CGCG 1 cut(s) 69
Bsu15I ATCGAT 1 cut(s) 83
BsuTUI ATCGAT 1 cut(s) 83
BtsIMutI CAGTG 1 cut(s) 138
BveI ACCTGC 1 cut(s) 359
CfoI GCGC 2 cut(s) 6, 224
ClaI ATCGAT 1 cut(s) 83
CspCI CAANNNNNGTGG 2 cut(s) 129, 164
CviAII CATG 3 cut(s) 322, 328, 433
CviJI RGCY 7 cut(s) 12, 53, 139, 155, 191, 265, 317
CviKI_1 RGCY 7 cut(s) 12, 53, 139, 155, 191, 265, 317
DpnI GATC 1 cut(s) 86
DpnII GATC 1 cut(s) 84
Eam1104I CTCTTC 1 cut(s) 174
EarI CTCTTC 1 cut(s) 174
Eco57I CTGAAG 1 cut(s) 377
EcoRII CCWGG 2 cut(s) 7, 193
FaeI CATG 3 cut(s) 325, 331, 436
FaiI YATR 8 cut(s) 323, 329, 339, 393, 411, 416, 421, 434
FaqI GGGAC 1 cut(s) 366
FatI CATG 3 cut(s) 321, 327, 432
FspBI CTAG 1 cut(s) 36
GlaI GCGC 2 cut(s) 5, 223
GsuI CTGGAG 1 cut(s) 177
HapII CCGG 1 cut(s) 350
HhaI GCGC 2 cut(s) 6, 224
Hin1II CATG 3 cut(s) 325, 331, 436
Hin6I GCGC 2 cut(s) 4, 222
HinP1I GCGC 2 cut(s) 4, 222
HindIII AAGCTT 1 cut(s) 263
HinfI GANTC 1 cut(s) 236
HpaII CCGG 1 cut(s) 350
HphI GGTGA 1 cut(s) 383
Hpy188III TCNNGA 1 cut(s) 292
Hpy99I CGWCG 1 cut(s) 298
HpyAV CCTTC 1 cut(s) 100
HpyCH4IV ACGT 1 cut(s) 279
HpyCH4V TGCA 2 cut(s) 331, 436
HpySE526I ACGT 1 cut(s) 279
Hsp92II CATG 3 cut(s) 325, 331, 436
HspAI GCGC 2 cut(s) 4, 222
Kzo9I GATC 1 cut(s) 84
LmnI GCTCC 2 cut(s) 196, 314
LpnPI CCDG 7 cut(s) 21, 74, 123, 180, 207, 354, 363
MaeI CTAG 1 cut(s) 36
MaeII ACGT 1 cut(s) 279
MaeIII GTNAC 1 cut(s) 371
MalI GATC 1 cut(s) 86
MboI GATC 1 cut(s) 84
MboII GAAGA 2 cut(s) 191, 370
MhlI GDGCHC 1 cut(s) 79
MluCI AATT 4 cut(s) 29, 40, 114, 162
MnlI CCTC 1 cut(s) 292
MseI TTAA 3 cut(s) 99, 165, 201
MslI CAYNNNNRTG 1 cut(s) 326
MspI CCGG 1 cut(s) 350
MspR9I CCNGG 3 cut(s) 9, 195, 351
MvaI CCWGG 2 cut(s) 9, 195
MvnI CGCG 1 cut(s) 69
NciI CCSGG 1 cut(s) 351
NdeII GATC 1 cut(s) 84
NlaIII CATG 3 cut(s) 325, 331, 436
NlaIV GGNNCC 1 cut(s) 316
NmuCI GTSAC 1 cut(s) 371
NspV TTCGAA 1 cut(s) 260
PaqCI CACCTGC 1 cut(s) 359
PfeI GAWTC 1 cut(s) 236
PflFI GACNNNGTC 1 cut(s) 377
Psp1406I AACGTT 1 cut(s) 279
Psp6I CCWGG 2 cut(s) 7, 193
PspGI CCWGG 2 cut(s) 7, 193
PspN4I GGNNCC 1 cut(s) 316
PsyI GACNNNGTC 1 cut(s) 377
RseI CAYNNNNRTG 1 cut(s) 326
SaqAI TTAA 3 cut(s) 99, 165, 201
Sau3AI GATC 1 cut(s) 84
ScrFI CCNGG 3 cut(s) 9, 195, 351
SduI GDGCHC 1 cut(s) 79
SetI ASST 5 cut(s) 193, 267, 282, 303, 373
SfuI TTCGAA 1 cut(s) 260
SmiMI CAYNNNNRTG 1 cut(s) 326
Sse9I AATT 4 cut(s) 29, 40, 114, 162
SspI AATATT 1 cut(s) 218
SspMI CTAG 1 cut(s) 36
StyD4I CCNGG 3 cut(s) 7, 193, 349
TaiI ACGT 1 cut(s) 282
TaqI TCGA 4 cut(s) 83, 177, 260, 293
TasI AATT 4 cut(s) 29, 40, 114, 162
TfiI GAWTC 1 cut(s) 236
Tru1I TTAA 3 cut(s) 99, 165, 201
Tru9I TTAA 3 cut(s) 99, 165, 201
TscAI CASTG 1 cut(s) 138
TseFI GTSAC 1 cut(s) 371
Tsp45I GTSAC 1 cut(s) 371
TspDTI ATGAA 2 cut(s) 35, 225
TspGWI ACGGA 1 cut(s) 311
TspRI CASTG 1 cut(s) 138
Tth111I GACNNNGTC 1 cut(s) 377
XapI RAATTY 2 cut(s) 40, 114
XspI CTAG 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.