Rmu_co8337567.1_g000001

Dehydration-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8337567.1
OG0000559
Physical Location & Seq
Forward (+)
1 .. 874
874 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8337567.1_g000001.1.cds

Sequence Viewer

Length: 684 bp
caggtcgcattagcactgttgggaagaagctatgcctctaatgatgtatcatggggttcttactggcagtcagctttcccaaaaactgcgatacccaaaaccctacaagaacttctacatccggacaactggatcgaagggaaaagtagatacactgggttcagcaaggacgatctaaacatcaacaccttgctagtttccggatctgcatttccaactattggtaaagatagctatgccgaggccgcctccggaaaaatccaagtggagccagatgtgactactttctttttagaaaaggatctgcgactggggaagaagatgaccctgcacttccccaaaaccacagttgcctccgagatcttgcctcgtaaagtcgccaagtccatacccttttcgacgagcaagctgccgcagattctcaaccactttgcggtgaaacccaactcagtggaagcagaagtgatcaaacagacgatcgaagactgcgaggcgcccggcatcaaaggggaagacaagtactgcgccacgtcgttggaatccttggtcgattttaccgtttcgaagctcggtaaatacgtgcaggtgtattccacagaggtcgaaaacgaaaacaaacaggaatataagattggaaaaggagctgtgcagcgaattggagacaggtcagtgctgaagcggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BURP

Protein Analysis

227

Amino Acids

25.16

Weight (kDa)

8.68

Isoelectric Point (pI)

34.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000559)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25610
fragaria_vesca FvH4_2g36250 FvH4_2g36250 FvH4_2g36250 FvH4_7g14680
malus_domestica MD04G1018200.v1.1 MD08G1119600.v1.1 MD08G1119700.v1.1 MD08G1119800.v1.1 MD08G1199500.v1.1 MD08G1203300.v1.1 MD15G1098800.v1.1 MD15G1219500.v1.1
prunus_persica Prupe.1G453500_v2.0.a1 Prupe.1G453600_v2.0.a1 Prupe.1G453700_v2.0.a1 Prupe.1G465600_v2.0.a1 Prupe.1G475100_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475400_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475800_v2.0.a1 Prupe.1G475900_v2.0.a1 Prupe.1G476200_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476700_v2.0.a1 Prupe.1G477000_v2.0.a1 Prupe.1G477200_v2.0.a1 Prupe.1G477400_v2.0.a1 Prupe.1G477800_v2.0.a1 Prupe.4G169000_v2.0.a1 Prupe.4G257600_v2.0.a1
pyrus_communis pycom08g16760 pycom14g01650 pycom15g09040 pycom15g09070
rosa_chinensis RchiOBHm_Chr1g0356161 RchiOBHm_Chr1g0356461 RchiOBHm_Chr5g0051031
rosa_laevigata RLG00000010869 RLG00000028095 RLG00000028100 RLG00000034755
rosa_multiflora Rmu_co8314191.1_g000001 Rmu_co8337567.1_g000001 Rmu_sc0000281.1_g000019 Rmu_sc0000446.1_g000034 Rmu_sc0000782.1_g000019 Rmu_sc0001809.1_g000027 Rmu_sc0013768.1_g000023
rosa_roxburghii Rroxscaffold_1G00029620 Rroxscaffold_4G00299510 Rroxscaffold_4G00299720 Rroxscaffold_7G00162480
rosa_rugosa Rorug01G0249900 Rorug01G0250000 Rorug05G0572100 Rorug06G0342600
rosa_samantha Rh1AG262800 Rh1AG263300 Rh1AG263600 Rh1BG231500 Rh1CG246400 Rh1CG246900 Rh1DG259200 Rh5AG337800 Rh5BG347500 Rh5CG374800 Rh5DG360600 Rh6BG447100 Rh6CG468100 Rh6DG454900
rosa_wichuraiana Rw1G023250 Rw1G023300 Rw5G031920 Rw6G039620 Rw7G036720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 574
Acc36I ACCTGC 1 cut(s) 574
AccB1I GGYRCC 1 cut(s) 493
AccB7I CCANNNNNTGG 1 cut(s) 221
AccIII TCCGGA 3 cut(s) 121, 200, 251
AciI CCGC 4 cut(s) 246, 413, 434, 679
AclWI GGATC 3 cut(s) 140, 211, 309
AcyI GRCGYC 1 cut(s) 494
AfaI GTAC 1 cut(s) 521
AfiI CCNNNNNNNGG 2 cut(s) 221, 433
AjiI CACGTC 1 cut(s) 531
AjuI GAANNNNNNNTTGG 2 cut(s) 615, 647
AluBI AGCT 6 cut(s) 30, 74, 234, 409, 568, 644
AluI AGCT 6 cut(s) 30, 74, 234, 409, 568, 644
Alw26I GTCTC 1 cut(s) 654
AlwI GGATC 3 cut(s) 140, 211, 309
Aor13HI TCCGGA 3 cut(s) 121, 200, 251
AoxI GGCC 1 cut(s) 243
ApeKI GCWGC 2 cut(s) 409, 649
AspLEI GCGC 2 cut(s) 496, 527
AsuC2I CCSGG 1 cut(s) 498
AsuHPI GGTGA 1 cut(s) 448
AsuII TTCGAA 1 cut(s) 563
BanI GGYRCC 1 cut(s) 493
BbsI GAAGAC 2 cut(s) 489, 519
BbvI GCAGC 2 cut(s) 396, 661
BcgI CGANNNNNNTGC 2 cut(s) 391, 425
BclI TGATCA 1 cut(s) 465
BcnI CCSGG 1 cut(s) 498
BcoDI GTCTC 1 cut(s) 654
BfaI CTAG 1 cut(s) 194
BfoI RGCGCY 1 cut(s) 497
BfuAI ACCTGC 1 cut(s) 574
BglII AGATCT 1 cut(s) 360
BisI GCNGC 4 cut(s) 246, 410, 413, 650
BlsI GCNGC 4 cut(s) 247, 411, 414, 651
BmcAI AGTACT 1 cut(s) 521
Bme1390I CCNGG 1 cut(s) 498
BmgBI CACGTC 1 cut(s) 531
BmiI GGNNCC 2 cut(s) 270, 495
BmrFI CCNGG 1 cut(s) 498
BmrI ACTGGG 2 cut(s) 165, 320
BmsI GCATC 1 cut(s) 510
BmuI ACTGGG 2 cut(s) 165, 320
BpiI GAAGAC 2 cut(s) 489, 519
BplI GAGNNNNNCTC 2 cut(s) 233, 265
Bpu14I TTCGAA 1 cut(s) 563
BpuMI CCSGG 1 cut(s) 498
BsaAI YACGTR 1 cut(s) 580
BsaHI GRCGYC 1 cut(s) 494
BsaJI CCNNGG 2 cut(s) 240, 543
BsaWI WCCGGW 3 cut(s) 121, 200, 251
Bsc4I CCNNNNNNNGG 2 cut(s) 221, 433
Bse1I ACTGG 4 cut(s) 68, 134, 160, 315
BseAI TCCGGA 3 cut(s) 121, 200, 251
BseDI CCNNGG 2 cut(s) 240, 543
BseGI GGATG 1 cut(s) 118
BseLI CCNNNNNNNGG 2 cut(s) 221, 433
BseMII CTCAG 1 cut(s) 462
BseNI ACTGG 4 cut(s) 68, 134, 160, 315
BseXI GCAGC 2 cut(s) 396, 661
BsgI GTGCAG 3 cut(s) 314, 602, 668
Bsh1285I CGRYCG 1 cut(s) 480
BshFI GGCC 1 cut(s) 245
BshNI GGYRCC 1 cut(s) 493
BsiEI CGRYCG 1 cut(s) 480
BsiSI CCGG 4 cut(s) 122, 201, 252, 498
BslI CCNNNNNNNGG 2 cut(s) 221, 433
BsmAI GTCTC 1 cut(s) 654
BsnI GGCC 1 cut(s) 245
Bsp119I TTCGAA 1 cut(s) 563
Bsp13I TCCGGA 3 cut(s) 121, 200, 251
Bsp143I GATC 7 cut(s) 132, 172, 203, 301, 360, 465, 477
BspACI CCGC 4 cut(s) 246, 413, 434, 679
BspANI GGCC 1 cut(s) 245
BspCNI CTCAG 1 cut(s) 461
BspEI TCCGGA 3 cut(s) 121, 200, 251
BspLI GGNNCC 2 cut(s) 270, 495
BspMI ACCTGC 1 cut(s) 574
BspPI GGATC 3 cut(s) 140, 211, 309
BspT104I TTCGAA 1 cut(s) 563
BspT107I GGYRCC 1 cut(s) 493
BsrI ACTGG 4 cut(s) 68, 134, 160, 315
BssECI CCNNGG 2 cut(s) 240, 543
BssMI GATC 7 cut(s) 132, 172, 203, 301, 360, 465, 477
BssNI GRCGYC 1 cut(s) 494
BssT1I CCWWGG 1 cut(s) 543
Bst4CI ACNGT 3 cut(s) 18, 349, 559
BstACI GRCGYC 1 cut(s) 494
BstBAI YACGTR 1 cut(s) 580
BstBI TTCGAA 1 cut(s) 563
BstC8I GCNNGC 1 cut(s) 407
BstDEI CTNAG 1 cut(s) 448
BstF5I GGATG 1 cut(s) 118
BstH2I RGCGCY 1 cut(s) 497
BstHHI GCGC 2 cut(s) 496, 527
BstKTI GATC 7 cut(s) 135, 175, 206, 304, 363, 468, 480
BstMAI GTCTC 1 cut(s) 654
BstMBI GATC 7 cut(s) 132, 172, 203, 301, 360, 465, 477
BstMCI CGRYCG 1 cut(s) 480
BstMWI GCNNNNNNNGC 1 cut(s) 245
BstSCI CCNGG 1 cut(s) 496
BstV1I GCAGC 2 cut(s) 396, 661
BstV2I GAAGAC 2 cut(s) 489, 519
BstX2I RGATCY 3 cut(s) 203, 301, 360
BstXI CCANNNNNNTGG 2 cut(s) 451, 535
BstYI RGATCY 3 cut(s) 203, 301, 360
BsuRI GGCC 1 cut(s) 245
BtrI CACGTC 1 cut(s) 531
BtsCI GGATG 1 cut(s) 118
BtsIMutI CAGTG 4 cut(s) 14, 153, 456, 675
BveI ACCTGC 1 cut(s) 574
Cac8I GCNNGC 1 cut(s) 407
CfoI GCGC 2 cut(s) 496, 527
Csp6I GTAC 1 cut(s) 520
CviAII CATG 1 cut(s) 51
CviJI RGCY 8 cut(s) 30, 74, 234, 245, 271, 409, 568, 644
CviKI_1 RGCY 8 cut(s) 30, 74, 234, 245, 271, 409, 568, 644
CviQI GTAC 1 cut(s) 520
DdeI CTNAG 1 cut(s) 448
DinI GGCGCC 1 cut(s) 495
DpnI GATC 7 cut(s) 134, 174, 205, 303, 362, 467, 479
DpnII GATC 7 cut(s) 132, 172, 203, 301, 360, 465, 477
Eco130I CCWWGG 1 cut(s) 543
EcoT14I CCWWGG 1 cut(s) 543
EgeI GGCGCC 1 cut(s) 495
EheI GGCGCC 1 cut(s) 495
ErhI CCWWGG 1 cut(s) 543
FaeI CATG 1 cut(s) 54
FaiI YATR 5 cut(s) 33, 52, 237, 389, 627
FatI CATG 1 cut(s) 50
FbaI TGATCA 1 cut(s) 465
Fnu4HI GCNGC 4 cut(s) 246, 410, 413, 650
FokI GGATG 1 cut(s) 105
Fsp4HI GCNGC 4 cut(s) 246, 410, 413, 650
FspBI CTAG 1 cut(s) 194
GlaI GCGC 2 cut(s) 495, 526
GluI GCNGC 4 cut(s) 246, 410, 413, 650
HaeII RGCGCY 1 cut(s) 497
HaeIII GGCC 1 cut(s) 245
HapII CCGG 4 cut(s) 122, 201, 252, 498
HhaI GCGC 2 cut(s) 496, 527
Hin1I GRCGYC 1 cut(s) 494
Hin1II CATG 1 cut(s) 54
Hin6I GCGC 2 cut(s) 494, 525
HinP1I GCGC 2 cut(s) 494, 525
HinfI GANTC 2 cut(s) 418, 539
HpaII CCGG 4 cut(s) 122, 201, 252, 498
HphI GGTGA 1 cut(s) 448
Hpy188I TCNGA 1 cut(s) 358
Hpy188III TCNNGA 3 cut(s) 122, 201, 252
Hpy99I CGWCG 2 cut(s) 403, 535
HpyAV CCTTC 1 cut(s) 131
HpyCH4III ACNGT 3 cut(s) 18, 349, 559
HpyCH4IV ACGT 2 cut(s) 530, 579
HpyCH4V TGCA 4 cut(s) 209, 331, 583, 649
HpyF10VI GCNNNNNNNGC 1 cut(s) 245
HpyF3I CTNAG 1 cut(s) 448
HpySE526I ACGT 2 cut(s) 530, 579
Hsp92I GRCGYC 1 cut(s) 494
Hsp92II CATG 1 cut(s) 54
HspAI GCGC 2 cut(s) 494, 525
KasI GGCGCC 1 cut(s) 493
Kpn2I TCCGGA 3 cut(s) 121, 200, 251
Ksp22I TGATCA 1 cut(s) 465
Kzo9I GATC 7 cut(s) 132, 172, 203, 301, 360, 465, 477
LmnI GCTCC 2 cut(s) 268, 641
Lsp1109I GCAGC 2 cut(s) 396, 661
LweI GCATC 1 cut(s) 510
MaeI CTAG 1 cut(s) 194
MaeII ACGT 2 cut(s) 530, 579
MaeIII GTNAC 1 cut(s) 277
MalI GATC 7 cut(s) 134, 174, 205, 303, 362, 467, 479
MboI GATC 7 cut(s) 132, 172, 203, 301, 360, 465, 477
MboII GAAGA 5 cut(s) 36, 328, 331, 494, 524
MflI RGATCY 3 cut(s) 203, 301, 360
MluCI AATT 1 cut(s) 654
Mly113I GGCGCC 1 cut(s) 494
MmeI TCCRAC 2 cut(s) 239, 516
MnlI CCTC 7 cut(s) 46, 235, 259, 364, 378, 484, 592
MroI TCCGGA 3 cut(s) 121, 200, 251
MspI CCGG 4 cut(s) 122, 201, 252, 498
MspR9I CCNGG 1 cut(s) 498
MwoI GCNNNNNNNGC 1 cut(s) 245
NarI GGCGCC 1 cut(s) 494
NciI CCSGG 1 cut(s) 498
NdeII GATC 7 cut(s) 132, 172, 203, 301, 360, 465, 477
NlaIII CATG 1 cut(s) 54
NlaIV GGNNCC 2 cut(s) 270, 495
NmeAIII GCCGAG 1 cut(s) 265
NmuCI GTSAC 1 cut(s) 277
NspV TTCGAA 1 cut(s) 563
PaqCI CACCTGC 1 cut(s) 574
PcsI WCGNNNNNNNCGW 3 cut(s) 486, 555, 576
PfeI GAWTC 2 cut(s) 418, 539
PflMI CCANNNNNTGG 1 cut(s) 221
PkrI GCNGC 4 cut(s) 247, 411, 414, 651
Ple19I CGATCG 1 cut(s) 480
PluTI GGCGCC 1 cut(s) 497
Ppu21I YACGTR 1 cut(s) 580
PspN4I GGNNCC 2 cut(s) 270, 495
PsuI RGATCY 3 cut(s) 203, 301, 360
PvuI CGATCG 1 cut(s) 480
RsaI GTAC 1 cut(s) 521
RsaNI GTAC 1 cut(s) 520
SatI GCNGC 4 cut(s) 246, 410, 413, 650
Sau3AI GATC 7 cut(s) 132, 172, 203, 301, 360, 465, 477
ScaI AGTACT 1 cut(s) 521
ScrFI CCNGG 1 cut(s) 498
SfaNI GCATC 1 cut(s) 510
SfoI GGCGCC 1 cut(s) 495
SfuI TTCGAA 1 cut(s) 563
Sse9I AATT 1 cut(s) 654
SsiI CCGC 4 cut(s) 246, 413, 434, 679
SspDI GGCGCC 1 cut(s) 493
SspMI CTAG 1 cut(s) 194
StyD4I CCNGG 1 cut(s) 496
StyI CCWWGG 1 cut(s) 543
TaaI ACNGT 3 cut(s) 18, 349, 559
TaiI ACGT 2 cut(s) 533, 582
TaqI TCGA 6 cut(s) 135, 398, 480, 549, 563, 603
TasI AATT 1 cut(s) 654
TatI WGTACW 1 cut(s) 519
TauI GCSGC 2 cut(s) 248, 415
TfiI GAWTC 2 cut(s) 418, 539
TscAI CASTG 4 cut(s) 21, 160, 456, 675
TseFI GTSAC 1 cut(s) 277
TseI GCWGC 2 cut(s) 409, 649
Tsp45I GTSAC 1 cut(s) 277
TspRI CASTG 4 cut(s) 21, 160, 456, 675
Van91I CCANNNNNTGG 1 cut(s) 221
XspI CTAG 1 cut(s) 194
ZrmI AGTACT 1 cut(s) 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.