Rh1AG262800

Dehydration-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000559
Physical Location & Seq
Reverse (-)
48639140 .. 48639967
828 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG262800.1

Sequence Viewer

Length: 828 bp
ATGGTTCTATGGTTTTACCAAAGACAAGGATGCTCATCAAAAGAACTGATATATTGGTCAGAAGGTAAAAGAAGTTACGATGGGATTGGAAAGGATCGTGTAAGTGGTTGCAGCTGTTTTAGCTGTTATGGTGGGGGCTGTACAGAAGAAGTCAAAGTGAAGCCAGGTTTAACTACATACTTCCAAGAGAAAGATCTTCAGCATTTGGGAAAAACGGTGACGTTGCAATTCTTGAAACCCACAGATAACAACGCAACTCTTTTGCCTCGTAAAGTTGTAAAGTCTATACCCTTTTCCAGCAACAAGTTGCCAGAAATTCTAATATACTTTGGAGTGAAACCCATGTCGGCGGTTGCAGAAATAATGAAAAGCACAATCGAAGAGTGTGAGGCACCGGCAATTAAGGGCGAAGACAAGTACTGCGCAACATCGTTAGAATCCTTGATTGATTTCACGGTTTCAAAGCTTGGGAAGTACGTCCAAGTTTATGCAACCGAGGCCGAAAACAATAACGAAAACAAACAAGAATATAGCATTGAGATTACTGGAGTCCAAAGTATTGGAGACAGCTCGGTTGTGTGCCATAAGAAGAGCTATGTGTATGGTGTGTTTTACTGCCACAAATTCAATAACACAAGGGCTTACATGGTTCCGTTGGTTGGTGCTGATGGAGTTGCGAAAGTTAAAGCATTAGTTGTTTGCCATACTGACACCACTAGCTGGAATCCTAAGCATTTGGCCTTTCAAGTCCTCAAAATAAAGCCTGGAAATACAATCGCTGTCTGTCATTTTCTAGCCACTACCAGTCTTTTGTGGGTTCCTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BURP

Protein Analysis

275

Amino Acids

30.63

Weight (kDa)

8.52

Isoelectric Point (pI)

48.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BURP PF03181 60 - 274 6.1e-78 BURP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000559)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25610
fragaria_vesca FvH4_2g36250 FvH4_2g36250 FvH4_2g36250 FvH4_7g14680
malus_domestica MD04G1018200.v1.1 MD08G1119600.v1.1 MD08G1119700.v1.1 MD08G1119800.v1.1 MD08G1199500.v1.1 MD08G1203300.v1.1 MD15G1098800.v1.1 MD15G1219500.v1.1
prunus_persica Prupe.1G453500_v2.0.a1 Prupe.1G453600_v2.0.a1 Prupe.1G453700_v2.0.a1 Prupe.1G465600_v2.0.a1 Prupe.1G475100_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475400_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475800_v2.0.a1 Prupe.1G475900_v2.0.a1 Prupe.1G476200_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476700_v2.0.a1 Prupe.1G477000_v2.0.a1 Prupe.1G477200_v2.0.a1 Prupe.1G477400_v2.0.a1 Prupe.1G477800_v2.0.a1 Prupe.4G169000_v2.0.a1 Prupe.4G257600_v2.0.a1
pyrus_communis pycom08g16760 pycom14g01650 pycom15g09040 pycom15g09070
rosa_chinensis RchiOBHm_Chr1g0356161 RchiOBHm_Chr1g0356461 RchiOBHm_Chr5g0051031
rosa_laevigata RLG00000010869 RLG00000028095 RLG00000028100 RLG00000034755
rosa_multiflora Rmu_co8314191.1_g000001 Rmu_co8337567.1_g000001 Rmu_sc0000281.1_g000019 Rmu_sc0000446.1_g000034 Rmu_sc0000782.1_g000019 Rmu_sc0001809.1_g000027 Rmu_sc0013768.1_g000023
rosa_roxburghii Rroxscaffold_1G00029620 Rroxscaffold_4G00299510 Rroxscaffold_4G00299720 Rroxscaffold_7G00162480
rosa_rugosa Rorug01G0249900 Rorug01G0250000 Rorug05G0572100 Rorug06G0342600
rosa_samantha Rh1AG262800 Rh1AG263300 Rh1AG263600 Rh1BG231500 Rh1CG246400 Rh1CG246900 Rh1DG259200 Rh5AG337800 Rh5BG347500 Rh5CG374800 Rh5DG360600 Rh6BG447100 Rh6CG468100 Rh6DG454900
rosa_wichuraiana Rw1G023250 Rw1G023300 Rw5G031920 Rw6G039620 Rw7G036720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 424
AccB1I GGYRCC 1 cut(s) 391
AccB7I CCANNNNNTGG 1 cut(s) 720
AciI CCGC 1 cut(s) 350
AclWI GGATC 1 cut(s) 102
AcsI RAATTY 2 cut(s) 315, 623
AcuI CTGAAG 1 cut(s) 182
AfaI GTAC 3 cut(s) 142, 419, 476
AfiI CCNNNNNNNGG 2 cut(s) 659, 720
AgsI TTSAA 4 cut(s) 235, 462, 628, 746
AjnI CCWGG 2 cut(s) 163, 763
AluBI AGCT 6 cut(s) 114, 123, 466, 570, 594, 720
AluI AGCT 6 cut(s) 114, 123, 466, 570, 594, 720
Alw26I GTCTC 1 cut(s) 558
AlwI GGATC 1 cut(s) 102
AoxI GGCC 2 cut(s) 498, 738
ApeKI GCWGC 1 cut(s) 111
ApoI RAATTY 2 cut(s) 315, 623
AspLEI GCGC 1 cut(s) 425
AsuHPI GGTGA 1 cut(s) 229
BanI GGYRCC 1 cut(s) 391
BbsI GAAGAC 1 cut(s) 417
BbvI GCAGC 1 cut(s) 123
BccI CCATC 2 cut(s) 74, 662
BciT130I CCWGG 2 cut(s) 165, 765
BcoDI GTCTC 1 cut(s) 558
BfaI CTAG 2 cut(s) 717, 794
BglII AGATCT 1 cut(s) 193
BisI GCNGC 1 cut(s) 112
BlsI GCNGC 1 cut(s) 113
BmcAI AGTACT 1 cut(s) 419
Bme1390I CCNGG 2 cut(s) 165, 765
BmiI GGNNCC 3 cut(s) 393, 651, 819
BmrFI CCNGG 2 cut(s) 165, 765
BmsI GCATC 1 cut(s) 20
BpiI GAAGAC 1 cut(s) 417
BpmI CTGGAG 1 cut(s) 567
Bpu10I CCTNAGC 1 cut(s) 729
BsaBI GATNNNNATC 1 cut(s) 34
BsaJI CCNNGG 1 cut(s) 495
Bsc4I CCNNNNNNNGG 2 cut(s) 659, 720
Bse118I RCCGGY 1 cut(s) 394
Bse1I ACTGG 2 cut(s) 550, 804
Bse8I GATNNNNATC 1 cut(s) 34
BseBI CCWGG 2 cut(s) 165, 765
BseDI CCNNGG 1 cut(s) 495
BseGI GGATG 1 cut(s) 35
BseJI GATNNNNATC 1 cut(s) 34
BseLI CCNNNNNNNGG 2 cut(s) 659, 720
BseNI ACTGG 2 cut(s) 550, 804
BseXI GCAGC 1 cut(s) 123
BshFI GGCC 2 cut(s) 500, 740
BshNI GGYRCC 1 cut(s) 391
BsiSI CCGG 1 cut(s) 395
BslI CCNNNNNNNGG 2 cut(s) 659, 720
BsmAI GTCTC 1 cut(s) 558
BsnI GGCC 2 cut(s) 500, 740
Bsp1407I TGTACA 1 cut(s) 140
Bsp143I GATC 2 cut(s) 94, 193
BspACI CCGC 1 cut(s) 350
BspANI GGCC 2 cut(s) 500, 740
BspLI GGNNCC 3 cut(s) 393, 651, 819
BspPI GGATC 1 cut(s) 102
BspQI GCTCTTC 1 cut(s) 584
BspT107I GGYRCC 1 cut(s) 391
BsrFI RCCGGY 1 cut(s) 394
BsrGI TGTACA 1 cut(s) 140
BsrI ACTGG 2 cut(s) 550, 804
BssAI RCCGGY 1 cut(s) 394
BssECI CCNNGG 1 cut(s) 495
BssMI GATC 2 cut(s) 94, 193
Bst2UI CCWGG 2 cut(s) 165, 765
Bst4CI ACNGT 2 cut(s) 217, 457
Bst6I CTCTTC 2 cut(s) 375, 584
BstAUI TGTACA 1 cut(s) 140
BstDEI CTNAG 1 cut(s) 729
BstF5I GGATG 1 cut(s) 35
BstHHI GCGC 1 cut(s) 425
BstKTI GATC 2 cut(s) 97, 196
BstMAI GTCTC 1 cut(s) 558
BstMBI GATC 2 cut(s) 94, 193
BstMWI GCNNNNNNNGC 2 cut(s) 120, 497
BstNI CCWGG 2 cut(s) 165, 765
BstSCI CCNGG 2 cut(s) 163, 763
BstV1I GCAGC 1 cut(s) 123
BstV2I GAAGAC 1 cut(s) 417
BstX2I RGATCY 1 cut(s) 193
BstXI CCANNNNNNTGG 1 cut(s) 560
BstYI RGATCY 1 cut(s) 193
BsuRI GGCC 2 cut(s) 500, 740
BtsCI GGATG 1 cut(s) 35
CfoI GCGC 1 cut(s) 425
Cfr10I RCCGGY 1 cut(s) 394
Csp6I GTAC 3 cut(s) 141, 418, 475
CviAII CATG 2 cut(s) 343, 646
CviQI GTAC 3 cut(s) 141, 418, 475
DdeI CTNAG 1 cut(s) 729
DpnI GATC 2 cut(s) 96, 195
DpnII GATC 2 cut(s) 94, 193
Eam1104I CTCTTC 2 cut(s) 375, 584
EarI CTCTTC 2 cut(s) 375, 584
Eco57I CTGAAG 1 cut(s) 182
EcoRII CCWGG 2 cut(s) 163, 763
FaeI CATG 2 cut(s) 346, 649
FatI CATG 2 cut(s) 342, 645
Fnu4HI GCNGC 1 cut(s) 112
FokI GGATG 1 cut(s) 42
Fsp4HI GCNGC 1 cut(s) 112
FspBI CTAG 2 cut(s) 717, 794
FspI TGCGCA 1 cut(s) 424
GlaI GCGC 1 cut(s) 424
GluI GCNGC 1 cut(s) 112
GsuI CTGGAG 1 cut(s) 567
HaeIII GGCC 2 cut(s) 500, 740
HapII CCGG 1 cut(s) 395
HhaI GCGC 1 cut(s) 425
Hin1II CATG 2 cut(s) 346, 649
Hin6I GCGC 1 cut(s) 423
HinP1I GCGC 1 cut(s) 423
HindIII AAGCTT 1 cut(s) 464
HinfI GANTC 3 cut(s) 437, 549, 724
HpaII CCGG 1 cut(s) 395
HphI GGTGA 1 cut(s) 229
Hpy188I TCNGA 1 cut(s) 61
Hpy188III TCNNGA 1 cut(s) 232
HpyAV CCTTC 1 cut(s) 56
HpyCH4III ACNGT 2 cut(s) 217, 457
HpyCH4IV ACGT 2 cut(s) 221, 477
HpyCH4V TGCA 4 cut(s) 111, 226, 356, 491
HpyF10VI GCNNNNNNNGC 2 cut(s) 120, 497
HpyF3I CTNAG 1 cut(s) 729
HpySE526I ACGT 2 cut(s) 221, 477
Hsp92II CATG 2 cut(s) 346, 649
HspAI GCGC 1 cut(s) 423
Kzo9I GATC 2 cut(s) 94, 193
LguI GCTCTTC 1 cut(s) 584
Lsp1109I GCAGC 1 cut(s) 123
LweI GCATC 1 cut(s) 20
MaeI CTAG 2 cut(s) 717, 794
MaeII ACGT 2 cut(s) 221, 477
MaeIII GTNAC 2 cut(s) 74, 217
MalI GATC 2 cut(s) 96, 195
MboI GATC 2 cut(s) 94, 193
MboII GAAGA 5 cut(s) 158, 188, 392, 422, 601
MflI RGATCY 1 cut(s) 193
MluCI AATT 4 cut(s) 227, 315, 399, 623
MlyI GAGTC 1 cut(s) 558
MnlI CCTC 4 cut(s) 276, 382, 490, 761
MseI TTAA 3 cut(s) 170, 402, 684
MspA1I CMGCKG 1 cut(s) 114
MspI CCGG 1 cut(s) 395
MspR9I CCNGG 2 cut(s) 165, 765
MvaI CCWGG 2 cut(s) 165, 765
MwoI GCNNNNNNNGC 2 cut(s) 120, 497
NdeII GATC 2 cut(s) 94, 193
NlaIII CATG 2 cut(s) 346, 649
NlaIV GGNNCC 3 cut(s) 393, 651, 819
NmuCI GTSAC 1 cut(s) 217
NsbI TGCGCA 1 cut(s) 424
PciSI GCTCTTC 1 cut(s) 584
PfeI GAWTC 2 cut(s) 437, 724
PflMI CCANNNNNTGG 1 cut(s) 720
PkrI GCNGC 1 cut(s) 113
PleI GAGTC 1 cut(s) 557
PpsI GAGTC 1 cut(s) 557
Psp6I CCWGG 2 cut(s) 163, 763
PspGI CCWGG 2 cut(s) 163, 763
PspN4I GGNNCC 3 cut(s) 393, 651, 819
PsuI RGATCY 1 cut(s) 193
PvuII CAGCTG 1 cut(s) 114
RsaI GTAC 3 cut(s) 142, 419, 476
RsaNI GTAC 3 cut(s) 141, 418, 475
SapI GCTCTTC 1 cut(s) 584
SaqAI TTAA 3 cut(s) 170, 402, 684
SatI GCNGC 1 cut(s) 112
Sau3AI GATC 2 cut(s) 94, 193
ScaI AGTACT 1 cut(s) 419
SchI GAGTC 1 cut(s) 558
ScrFI CCNGG 2 cut(s) 165, 765
SfaNI GCATC 1 cut(s) 20
Sse9I AATT 4 cut(s) 227, 315, 399, 623
SsiI CCGC 1 cut(s) 350
SspMI CTAG 2 cut(s) 717, 794
StyD4I CCNGG 2 cut(s) 163, 763
TaaI ACNGT 2 cut(s) 217, 457
TaiI ACGT 2 cut(s) 224, 480
TaqI TCGA 1 cut(s) 378
TasI AATT 4 cut(s) 227, 315, 399, 623
TatI WGTACW 2 cut(s) 140, 417
TfiI GAWTC 2 cut(s) 437, 724
Tru1I TTAA 3 cut(s) 170, 402, 684
Tru9I TTAA 3 cut(s) 170, 402, 684
TseFI GTSAC 1 cut(s) 217
TseI GCWGC 1 cut(s) 111
Tsp45I GTSAC 1 cut(s) 217
TspDTI ATGAA 1 cut(s) 380
TspGWI ACGGA 1 cut(s) 642
Van91I CCANNNNNTGG 1 cut(s) 720
XapI RAATTY 2 cut(s) 315, 623
XspI CTAG 2 cut(s) 717, 794
ZrmI AGTACT 1 cut(s) 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.