Prupe.1G476500_v2.0.a1

BURP domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000559
Physical Location & Seq
Forward (+)
39819800 .. 39821633
1834 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G476500.1

Sequence Viewer

Length: 1155 bp
ATGGTGAAGCCAGTGGCTATAAGAGCCAGCTCCAACTTTCTTTTATTCGTCTATAAAATGGTGAAGCCAGTTGCCAAGTTAATTTCAGTCCTAATGGGGTTTCATCTCCCACTCATCTTTGCTATTCTCAGTCTAGCAGTGGTTGCACTGGCAAACCATGCTGCTCAACCAGCACCTCAACTTTACTGGAACTCCGTCCTGCCAAACACACAAATGCCAAGATCTATCAGTGAACTTCTGCATCCTGACTCCACAAATGAAGAAAATATCGTGAATGCTGTTGGGAATGGAAAGCGCAAACCTGAAATTTTCCCATTGAGAAATATAAATTACGTTCAAAGCCATTATGGAGTGTTAAATAGAAATTACGTTCAAAGCCATTATAAAAAACGTCCTCCTCCACCTGAAAATATCCCATTTGCAAATCGAAAAAAGTACGCACTAGGTTCTCCTCCATCTGACAATCAACTACTCCATTATAAAGAGTTAGCTATTTTCTTCTTCGAGAAGGACATGCGCCCTGGCGCAACAATGAAGTTCCAATTCCCTAGAAATTCAAACACGGCTACTTTCCTGCCACGCGAAAGTGCTCAATCGATCCCCTTCTCCTCTAACAAACTACCAGAAATTTTCAACCATTTTTCAGTGAAGCCAACATCTGTGGAAGCCAAAACAATTAAGCAAACAATCGAAGAGTGTGAAGCTCCAGGCACTAAGGGAGAGGAAAAATATTGCGCCACATCTTTAGAATCAATGGTTGATTTTAGCACTTCGAAGCTTGGAACAAGAAACGTTGAAGCAGTCTCGACGGAGGTATTGGAAAAAGGAGCCACCATGTCCATGCACAACTATACAACAATGCCGGGACTGAAGAAGTTGGCAGGTGACAAAGTCGTTGTGTGTCATAAGGAGAACTATCCCTATGCTGTGTTTTTCTGCCATGCAATAAAACAAACAGCAGCTTATGTTCTCTCCCTGAAAGGCGATGATGGGGAGAAGGTTAAAGCAGTAACCATCTGCCATCTAGACACATCAGAATGGAACCCAGAGCATTTGTCCTTCCAAATCCTCAACGTTAAGCCCGGAACCGTTCCCATCTGCCATTTCATTTCCACTGATGCTATTGCCTGGGTTCCAAAACACAAATTTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BURP

Protein Analysis

385

Amino Acids

42.98

Weight (kDa)

9.21

Isoelectric Point (pI)

52.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000559)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25610
fragaria_vesca FvH4_2g36250 FvH4_2g36250 FvH4_2g36250 FvH4_7g14680
malus_domestica MD04G1018200.v1.1 MD08G1119600.v1.1 MD08G1119700.v1.1 MD08G1119800.v1.1 MD08G1199500.v1.1 MD08G1203300.v1.1 MD15G1098800.v1.1 MD15G1219500.v1.1
prunus_persica Prupe.1G453500_v2.0.a1 Prupe.1G453600_v2.0.a1 Prupe.1G453700_v2.0.a1 Prupe.1G465600_v2.0.a1 Prupe.1G475100_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475400_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475800_v2.0.a1 Prupe.1G475900_v2.0.a1 Prupe.1G476200_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476700_v2.0.a1 Prupe.1G477000_v2.0.a1 Prupe.1G477200_v2.0.a1 Prupe.1G477400_v2.0.a1 Prupe.1G477800_v2.0.a1 Prupe.4G169000_v2.0.a1 Prupe.4G257600_v2.0.a1
pyrus_communis pycom08g16760 pycom14g01650 pycom15g09040 pycom15g09070
rosa_chinensis RchiOBHm_Chr1g0356161 RchiOBHm_Chr1g0356461 RchiOBHm_Chr5g0051031
rosa_laevigata RLG00000010869 RLG00000028095 RLG00000028100 RLG00000034755
rosa_multiflora Rmu_co8314191.1_g000001 Rmu_co8337567.1_g000001 Rmu_sc0000281.1_g000019 Rmu_sc0000446.1_g000034 Rmu_sc0000782.1_g000019 Rmu_sc0001809.1_g000027 Rmu_sc0013768.1_g000023
rosa_roxburghii Rroxscaffold_1G00029620 Rroxscaffold_4G00299510 Rroxscaffold_4G00299720 Rroxscaffold_7G00162480
rosa_rugosa Rorug01G0249900 Rorug01G0250000 Rorug05G0572100 Rorug06G0342600
rosa_samantha Rh1AG262800 Rh1AG263300 Rh1AG263600 Rh1BG231500 Rh1CG246400 Rh1CG246900 Rh1DG259200 Rh5AG337800 Rh5BG347500 Rh5CG374800 Rh5DG360600 Rh6BG447100 Rh6CG468100 Rh6DG454900
rosa_wichuraiana Rw1G023250 Rw1G023300 Rw5G031920 Rw6G039620 Rw7G036720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 384, 480
AarI CACCTGC 1 cut(s) 872
Acc36I ACCTGC 1 cut(s) 872
AccII CGCG 1 cut(s) 582
AclI AACGTT 2 cut(s) 792, 1074
AclWI GGATC 1 cut(s) 592
AcsI RAATTY 4 cut(s) 306, 553, 627, 1145
AcuI CTGAAG 1 cut(s) 890
AfaI GTAC 1 cut(s) 437
AgsI TTSAA 5 cut(s) 338, 374, 558, 634, 797
AjnI CCWGG 3 cut(s) 520, 706, 1127
AluBI AGCT 5 cut(s) 30, 491, 704, 778, 962
AluI AGCT 5 cut(s) 30, 491, 704, 778, 962
Alw21I GWGCWC 1 cut(s) 592
Alw26I GTCTC 1 cut(s) 808
AlwI GGATC 1 cut(s) 592
ApeKI GCWGC 2 cut(s) 161, 959
ApoI RAATTY 4 cut(s) 306, 553, 627, 1145
AspLEI GCGC 4 cut(s) 297, 519, 527, 737
AsuC2I CCSGG 2 cut(s) 864, 1083
AsuHPI GGTGA 3 cut(s) 16, 73, 896
AsuII TTCGAA 1 cut(s) 773
Bbv12I GWGCWC 1 cut(s) 592
BbvI GCAGC 2 cut(s) 148, 971
BccI CCATC 5 cut(s) 463, 983, 1022, 1029, 1103
BceAI ACGGC 1 cut(s) 579
BciT130I CCWGG 3 cut(s) 522, 708, 1129
BcnI CCSGG 2 cut(s) 864, 1083
BcoDI GTCTC 1 cut(s) 808
BfaI CTAG 4 cut(s) 134, 443, 549, 1025
BfuAI ACCTGC 1 cut(s) 872
BglII AGATCT 1 cut(s) 221
BisI GCNGC 2 cut(s) 162, 960
BlsI GCNGC 2 cut(s) 163, 961
Bme1390I CCNGG 5 cut(s) 522, 708, 864, 1083, 1129
BmiI GGNNCC 4 cut(s) 829, 1043, 1087, 1134
BmrFI CCNGG 5 cut(s) 522, 708, 864, 1083, 1129
BmsI GCATC 2 cut(s) 250, 1108
BpmI CTGGAG 1 cut(s) 690
Bpu14I TTCGAA 1 cut(s) 773
BpuMI CCSGG 2 cut(s) 864, 1083
Bsa29I ATCGAT 1 cut(s) 596
BsaJI CCNNGG 2 cut(s) 520, 1128
BsaXI ACNNNNNCTCC 2 cut(s) 176, 206
Bse1I ACTGG 4 cut(s) 11, 68, 153, 191
BseBI CCWGG 3 cut(s) 522, 708, 1129
BseCI ATCGAT 1 cut(s) 596
BseDI CCNNGG 2 cut(s) 520, 1128
BseGI GGATG 1 cut(s) 241
BseMII CTCAG 1 cut(s) 142
BseNI ACTGG 4 cut(s) 11, 68, 153, 191
BseRI GAGGAG 3 cut(s) 387, 441, 598
BseXI GCAGC 2 cut(s) 148, 971
Bsh1236I CGCG 1 cut(s) 582
BshVI ATCGAT 1 cut(s) 596
BsiHKAI GWGCWC 1 cut(s) 592
BsiSI CCGG 2 cut(s) 863, 1083
BslFI GGGAC 1 cut(s) 879
BsmAI GTCTC 1 cut(s) 808
BsmFI GGGAC 1 cut(s) 879
BsmI GAATGC 1 cut(s) 280
Bsp119I TTCGAA 1 cut(s) 773
Bsp1286I GDGCHC 1 cut(s) 592
Bsp143I GATC 2 cut(s) 221, 597
BspCNI CTCAG 1 cut(s) 141
BspDI ATCGAT 1 cut(s) 596
BspFNI CGCG 1 cut(s) 582
BspLI GGNNCC 4 cut(s) 829, 1043, 1087, 1134
BspMI ACCTGC 1 cut(s) 872
BspPI GGATC 1 cut(s) 592
BspT104I TTCGAA 1 cut(s) 773
BsrI ACTGG 4 cut(s) 11, 68, 153, 191
BssECI CCNNGG 2 cut(s) 520, 1128
BssMI GATC 2 cut(s) 221, 597
Bst2UI CCWGG 3 cut(s) 522, 708, 1129
Bst4CI ACNGT 1 cut(s) 1090
Bst6I CTCTTC 1 cut(s) 687
BstAPI GCANNNNNTGC 2 cut(s) 143, 158
BstBI TTCGAA 1 cut(s) 773
BstC8I GCNNGC 1 cut(s) 28
BstDEI CTNAG 2 cut(s) 128, 714
BstF5I GGATG 1 cut(s) 241
BstFNI CGCG 1 cut(s) 582
BstHHI GCGC 4 cut(s) 297, 519, 527, 737
BstKTI GATC 2 cut(s) 224, 600
BstMAI GTCTC 1 cut(s) 808
BstMBI GATC 2 cut(s) 221, 597
BstMWI GCNNNNNNNGC 4 cut(s) 23, 143, 158, 170
BstNI CCWGG 3 cut(s) 522, 708, 1129
BstNSI RCATGY 1 cut(s) 517
BstSCI CCNGG 5 cut(s) 520, 706, 862, 1081, 1127
BstUI CGCG 1 cut(s) 582
BstV1I GCAGC 2 cut(s) 148, 971
BstX2I RGATCY 1 cut(s) 221
BstYI RGATCY 1 cut(s) 221
Bsu15I ATCGAT 1 cut(s) 596
BsuTUI ATCGAT 1 cut(s) 596
BtgZI GCGATG 1 cut(s) 999
BtsCI GGATG 1 cut(s) 241
BtsI GCAGTG 1 cut(s) 144
BtsIMutI CAGTG 6 cut(s) 18, 144, 146, 235, 651, 1113
BveI ACCTGC 1 cut(s) 872
Cac8I GCNNGC 1 cut(s) 28
CfoI GCGC 4 cut(s) 297, 519, 527, 737
ClaI ATCGAT 1 cut(s) 596
Csp6I GTAC 1 cut(s) 436
CspCI CAANNNNNGTGG 2 cut(s) 642, 677
CviAII CATG 6 cut(s) 158, 514, 835, 841, 941, 1152
CviQI GTAC 1 cut(s) 436
DdeI CTNAG 2 cut(s) 128, 714
DpnI GATC 2 cut(s) 223, 599
DpnII GATC 2 cut(s) 221, 597
Eam1104I CTCTTC 1 cut(s) 687
EarI CTCTTC 1 cut(s) 687
Eco57I CTGAAG 1 cut(s) 890
EcoRII CCWGG 3 cut(s) 520, 706, 1127
FaeI CATG 6 cut(s) 161, 517, 838, 844, 944, 1155
FaqI GGGAC 1 cut(s) 879
FatI CATG 6 cut(s) 157, 513, 834, 840, 940, 1151
Fnu4HI GCNGC 2 cut(s) 162, 960
FokI GGATG 1 cut(s) 228
Fsp4HI GCNGC 2 cut(s) 162, 960
FspBI CTAG 4 cut(s) 134, 443, 549, 1025
GlaI GCGC 4 cut(s) 296, 518, 526, 736
GluI GCNGC 2 cut(s) 162, 960
GsuI CTGGAG 1 cut(s) 690
HapII CCGG 2 cut(s) 863, 1083
HhaI GCGC 4 cut(s) 297, 519, 527, 737
Hin1II CATG 6 cut(s) 161, 517, 838, 844, 944, 1155
Hin6I GCGC 4 cut(s) 295, 517, 525, 735
HinP1I GCGC 4 cut(s) 295, 517, 525, 735
HindIII AAGCTT 1 cut(s) 776
HinfI GANTC 2 cut(s) 248, 749
HpaII CCGG 2 cut(s) 863, 1083
HphI GGTGA 3 cut(s) 16, 73, 896
Hpy166II GTNNAC 1 cut(s) 233
Hpy188I TCNGA 2 cut(s) 460, 1036
Hpy188III TCNNGA 5 cut(s) 245, 271, 505, 805, 1025
Hpy8I GTNNAC 1 cut(s) 233
Hpy99I CGWCG 1 cut(s) 811
HpyAV CCTTC 4 cut(s) 502, 613, 991, 1069
HpyCH4III ACNGT 1 cut(s) 1090
HpyCH4IV ACGT 5 cut(s) 333, 369, 391, 792, 1074
HpyCH4V TGCA 6 cut(s) 146, 241, 422, 844, 944, 1151
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 143, 158, 170
HpyF3I CTNAG 2 cut(s) 128, 714
HpySE526I ACGT 5 cut(s) 333, 369, 391, 792, 1074
Hsp92II CATG 6 cut(s) 161, 517, 838, 844, 944, 1155
HspAI GCGC 4 cut(s) 295, 517, 525, 735
Kzo9I GATC 2 cut(s) 221, 597
LmnI GCTCC 3 cut(s) 35, 709, 827
Lsp1109I GCAGC 2 cut(s) 148, 971
LweI GCATC 2 cut(s) 250, 1108
MaeI CTAG 4 cut(s) 134, 443, 549, 1025
MaeII ACGT 5 cut(s) 333, 369, 391, 792, 1074
MaeIII GTNAC 2 cut(s) 884, 1009
MalI GATC 2 cut(s) 223, 599
MboI GATC 2 cut(s) 221, 597
MboII GAAGA 5 cut(s) 272, 490, 493, 704, 883
MflI RGATCY 1 cut(s) 221
MhlI GDGCHC 1 cut(s) 592
MluCI AATT 9 cut(s) 81, 306, 328, 364, 542, 553, 627, 675, 1145
MlyI GAGTC 1 cut(s) 242
MmeI TCCRAC 1 cut(s) 57
MnlI CCTC 8 cut(s) 186, 405, 408, 462, 619, 715, 805, 1079
MseI TTAA 5 cut(s) 80, 356, 678, 1002, 1077
MslI CAYNNNNRTG 3 cut(s) 212, 839, 1036
MspI CCGG 2 cut(s) 863, 1083
MspR9I CCNGG 5 cut(s) 522, 708, 864, 1083, 1129
Mva1269I GAATGC 1 cut(s) 280
MvaI CCWGG 3 cut(s) 522, 708, 1129
MvnI CGCG 1 cut(s) 582
MwoI GCNNNNNNNGC 4 cut(s) 23, 143, 158, 170
NciI CCSGG 2 cut(s) 864, 1083
NdeII GATC 2 cut(s) 221, 597
NlaIII CATG 6 cut(s) 161, 517, 838, 844, 944, 1155
NlaIV GGNNCC 4 cut(s) 829, 1043, 1087, 1134
NmuCI GTSAC 1 cut(s) 884
NspI RCATGY 1 cut(s) 517
NspV TTCGAA 1 cut(s) 773
PaqCI CACCTGC 1 cut(s) 872
PctI GAATGC 1 cut(s) 280
PfeI GAWTC 1 cut(s) 749
PflFI GACNNNGTC 1 cut(s) 890
PkrI GCNGC 2 cut(s) 163, 961
PleI GAGTC 1 cut(s) 242
PpsI GAGTC 1 cut(s) 242
PsiI TTATAA 2 cut(s) 384, 480
Psp1406I AACGTT 2 cut(s) 792, 1074
Psp6I CCWGG 3 cut(s) 520, 706, 1127
PspGI CCWGG 3 cut(s) 520, 706, 1127
PspN4I GGNNCC 4 cut(s) 829, 1043, 1087, 1134
PsuI RGATCY 1 cut(s) 221
PsyI GACNNNGTC 1 cut(s) 890
RsaI GTAC 1 cut(s) 437
RsaNI GTAC 1 cut(s) 436
RseI CAYNNNNRTG 3 cut(s) 212, 839, 1036
SaqAI TTAA 5 cut(s) 80, 356, 678, 1002, 1077
SatI GCNGC 2 cut(s) 162, 960
Sau3AI GATC 2 cut(s) 221, 597
SchI GAGTC 1 cut(s) 242
ScrFI CCNGG 5 cut(s) 522, 708, 864, 1083, 1129
SduI GDGCHC 1 cut(s) 592
SfaNI GCATC 2 cut(s) 250, 1108
SfuI TTCGAA 1 cut(s) 773
SmiMI CAYNNNNRTG 3 cut(s) 212, 839, 1036
Sse9I AATT 9 cut(s) 81, 306, 328, 364, 542, 553, 627, 675, 1145
SspI AATATT 1 cut(s) 731
SspMI CTAG 4 cut(s) 134, 443, 549, 1025
StyD4I CCNGG 5 cut(s) 520, 706, 862, 1081, 1127
TaaI ACNGT 1 cut(s) 1090
TaiI ACGT 5 cut(s) 336, 372, 394, 795, 1077
TaqI TCGA 6 cut(s) 427, 504, 596, 690, 773, 806
TasI AATT 9 cut(s) 81, 306, 328, 364, 542, 553, 627, 675, 1145
TfiI GAWTC 1 cut(s) 749
Tru1I TTAA 5 cut(s) 80, 356, 678, 1002, 1077
Tru9I TTAA 5 cut(s) 80, 356, 678, 1002, 1077
TscAI CASTG 6 cut(s) 18, 144, 153, 235, 651, 1120
TseFI GTSAC 1 cut(s) 884
TseI GCWGC 2 cut(s) 161, 959
Tsp45I GTSAC 1 cut(s) 884
TspDTI ATGAA 4 cut(s) 92, 273, 548, 1096
TspGWI ACGGA 2 cut(s) 184, 824
TspRI CASTG 6 cut(s) 18, 144, 153, 235, 651, 1120
Tth111I GACNNNGTC 1 cut(s) 890
XapI RAATTY 4 cut(s) 306, 553, 627, 1145
XbaI TCTAGA 1 cut(s) 1024
XceI RCATGY 1 cut(s) 517
XspI CTAG 4 cut(s) 134, 443, 549, 1025
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.