Prupe.1G477800_v2.0.a1

BURP domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000559
Physical Location & Seq
Forward (+)
40006703 .. 40008883
2181 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G477800.1

Sequence Viewer

Length: 1026 bp
ATGGGGTTTCATCTCCCACTCATCGTTGCTATTCTCAGTCTAGCAGCGGTTGCACTGGCAAACAATGCTGCTCAACCAGCACCTCAACTTTACTGGAACTCCGTCCTGCCAAACACACAGATGCCAAGATCTATCAGTGAACTTCTGCATCCTGACTCCACAAATGAAGAAAAGAGCAAACCTGAAAATATCCCATTGGCACGTTCAGGTTACAGTCGAAAAAGGTATGGAGGAGGTCCTCCTCCATCTGACGAGGGCAAACCTGAAAGTATCCCATTGAGAAATTCAGGTTACCAACGAAAAAATTATGGAGGACGTCCTCCTCCATCTGACAGTCAACTACTCCATTATAGAGACTTAGCTATTTTCTTCTTCGAGAAGGACATGCGCCCTGGCTCAACAATGCAGTTCCAATTCCCTAGAAATTCAAACACGGCTACTTTCCTGCCACGCGAAAGTGCTCAATCAATCCCCTTCTCCTCTAACAAACTATCAGAAATTTTCAACCATTTTTCAGTGAAGCCGACATCTGTGGAAGCCAAAACAATTAAGCAAACAATCGAAGAGTGTGAAGCTCCAGGCCTTAAGGGAGAGGAAAAATATTGCGCCACATCTTTAGAATCAATGGTTGATTTTAGCACTTCGAAGCTTGGAACAAGAAACGTTGAAGCAATCTCGACGGAGGTATTGGAAGAAGGAGCCACCAAGTACATGCACAACTATACAACAATGCCGGGACTGAAGAAGTTGGCAGGTGACAAAGTCGTTGTGTGTCATAAGGAGAACTATCCCTATGCTGTGTTTTTCTGCCATGCAATAAAACAAACAGAAGCTTATGTTCTCACCCTGAAAGCCGATGATGGGATGAAGGTTAAAGCAGTAACCATCTGCCATCTAGACACATCAGAATGGGATCCAGAGCATTTGTCCTTCCAAATCCTCAACGTTAAGCCCGGAACCACTCCCATCTGCCATTTCATTTCCACTGATGCTATTGCCTGGGTTCCGAACCACAAATCTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BURP

Protein Analysis

342

Amino Acids

37.88

Weight (kDa)

7.16

Isoelectric Point (pI)

48.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000559)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25610
fragaria_vesca FvH4_2g36250 FvH4_2g36250 FvH4_2g36250 FvH4_7g14680
malus_domestica MD04G1018200.v1.1 MD08G1119600.v1.1 MD08G1119700.v1.1 MD08G1119800.v1.1 MD08G1199500.v1.1 MD08G1203300.v1.1 MD15G1098800.v1.1 MD15G1219500.v1.1
prunus_persica Prupe.1G453500_v2.0.a1 Prupe.1G453600_v2.0.a1 Prupe.1G453700_v2.0.a1 Prupe.1G465600_v2.0.a1 Prupe.1G475100_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475400_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475800_v2.0.a1 Prupe.1G475900_v2.0.a1 Prupe.1G476200_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476700_v2.0.a1 Prupe.1G477000_v2.0.a1 Prupe.1G477200_v2.0.a1 Prupe.1G477400_v2.0.a1 Prupe.1G477800_v2.0.a1 Prupe.4G169000_v2.0.a1 Prupe.4G257600_v2.0.a1
pyrus_communis pycom08g16760 pycom14g01650 pycom15g09040 pycom15g09070
rosa_chinensis RchiOBHm_Chr1g0356161 RchiOBHm_Chr1g0356461 RchiOBHm_Chr5g0051031
rosa_laevigata RLG00000010869 RLG00000028095 RLG00000028100 RLG00000034755
rosa_multiflora Rmu_co8314191.1_g000001 Rmu_co8337567.1_g000001 Rmu_sc0000281.1_g000019 Rmu_sc0000446.1_g000034 Rmu_sc0000782.1_g000019 Rmu_sc0001809.1_g000027 Rmu_sc0013768.1_g000023
rosa_roxburghii Rroxscaffold_1G00029620 Rroxscaffold_4G00299510 Rroxscaffold_4G00299720 Rroxscaffold_7G00162480
rosa_rugosa Rorug01G0249900 Rorug01G0250000 Rorug05G0572100 Rorug06G0342600
rosa_samantha Rh1AG262800 Rh1AG263300 Rh1AG263600 Rh1BG231500 Rh1CG246400 Rh1CG246900 Rh1DG259200 Rh5AG337800 Rh5BG347500 Rh5CG374800 Rh5DG360600 Rh6BG447100 Rh6CG468100 Rh6DG454900
rosa_wichuraiana Rw1G023250 Rw1G023300 Rw5G031920 Rw6G039620 Rw7G036720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 743
AatII GACGTC 1 cut(s) 319
Acc36I ACCTGC 1 cut(s) 743
AccII CGCG 1 cut(s) 453
AciI CCGC 1 cut(s) 47
AclI AACGTT 2 cut(s) 663, 945
AclWI GGATC 2 cut(s) 908, 921
AcsI RAATTY 3 cut(s) 283, 424, 498
AcuI CTGAAG 1 cut(s) 761
AcyI GRCGYC 1 cut(s) 316
AfaI GTAC 1 cut(s) 710
AfiI CCNNNNNNNGG 1 cut(s) 861
AflII CTTAAG 1 cut(s) 584
AgsI TTSAA 3 cut(s) 429, 505, 668
AjnI CCWGG 3 cut(s) 391, 577, 998
AluBI AGCT 4 cut(s) 362, 575, 649, 833
AluI AGCT 4 cut(s) 362, 575, 649, 833
Alw21I GWGCWC 1 cut(s) 463
Alw26I GTCTC 1 cut(s) 348
AlwI GGATC 2 cut(s) 908, 921
AoxI GGCC 1 cut(s) 580
ApeKI GCWGC 2 cut(s) 44, 68
ApoI RAATTY 3 cut(s) 283, 424, 498
AspLEI GCGC 2 cut(s) 390, 608
AspS9I GGNCC 1 cut(s) 236
AsuC2I CCSGG 2 cut(s) 735, 954
AsuHPI GGTGA 2 cut(s) 767, 835
AsuII TTCGAA 1 cut(s) 644
AvaII GGWCC 1 cut(s) 236
BamHI GGATCC 1 cut(s) 913
Bbv12I GWGCWC 1 cut(s) 463
BbvI GCAGC 2 cut(s) 55, 56
BccI CCATC 6 cut(s) 253, 334, 854, 893, 900, 974
BceAI ACGGC 1 cut(s) 450
BciT130I CCWGG 3 cut(s) 393, 579, 1000
BciVI GTATCC 1 cut(s) 281
BcnI CCSGG 2 cut(s) 735, 954
BcoDI GTCTC 1 cut(s) 348
BfaI CTAG 3 cut(s) 41, 420, 896
BfrI CTTAAG 1 cut(s) 584
BfuAI ACCTGC 1 cut(s) 743
BfuI GTATCC 1 cut(s) 281
BglII AGATCT 1 cut(s) 128
BisI GCNGC 2 cut(s) 45, 69
BlsI GCNGC 2 cut(s) 46, 70
Bme1390I CCNGG 5 cut(s) 393, 579, 735, 954, 1000
Bme18I GGWCC 1 cut(s) 236
BmgT120I GGNCC 1 cut(s) 236
BmiI GGNNCC 4 cut(s) 700, 915, 958, 1005
BmrFI CCNGG 5 cut(s) 393, 579, 735, 954, 1000
BmsI GCATC 3 cut(s) 111, 157, 979
BpmI CTGGAG 1 cut(s) 561
Bpu14I TTCGAA 1 cut(s) 644
BpuMI CCSGG 2 cut(s) 735, 954
BsaHI GRCGYC 1 cut(s) 316
BsaJI CCNNGG 2 cut(s) 391, 999
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bsc4I CCNNNNNNNGG 1 cut(s) 861
Bse1I ACTGG 2 cut(s) 60, 98
BseBI CCWGG 3 cut(s) 393, 579, 1000
BseDI CCNNGG 2 cut(s) 391, 999
BseGI GGATG 2 cut(s) 148, 870
BseLI CCNNNNNNNGG 1 cut(s) 861
BseMII CTCAG 1 cut(s) 49
BseNI ACTGG 2 cut(s) 60, 98
BseRI GAGGAG 4 cut(s) 231, 246, 312, 469
BseXI GCAGC 2 cut(s) 55, 56
Bsh1236I CGCG 1 cut(s) 453
BshFI GGCC 1 cut(s) 582
BsiHKAI GWGCWC 1 cut(s) 463
BsiSI CCGG 2 cut(s) 734, 954
BslFI GGGAC 1 cut(s) 750
BslI CCNNNNNNNGG 1 cut(s) 861
BsmAI GTCTC 1 cut(s) 348
BsmFI GGGAC 1 cut(s) 750
BsnI GGCC 1 cut(s) 582
Bsp119I TTCGAA 1 cut(s) 644
Bsp1286I GDGCHC 1 cut(s) 463
Bsp143I GATC 2 cut(s) 128, 913
BspACI CCGC 1 cut(s) 47
BspANI GGCC 1 cut(s) 582
BspCNI CTCAG 1 cut(s) 48
BspFNI CGCG 1 cut(s) 453
BspLI GGNNCC 4 cut(s) 700, 915, 958, 1005
BspMI ACCTGC 1 cut(s) 743
BspPI GGATC 2 cut(s) 908, 921
BspT104I TTCGAA 1 cut(s) 644
BspTI CTTAAG 1 cut(s) 584
BsrI ACTGG 2 cut(s) 60, 98
BssECI CCNNGG 2 cut(s) 391, 999
BssMI GATC 2 cut(s) 128, 913
BssNI GRCGYC 1 cut(s) 316
Bst2UI CCWGG 3 cut(s) 393, 579, 1000
Bst4CI ACNGT 2 cut(s) 215, 335
Bst6I CTCTTC 1 cut(s) 558
BstACI GRCGYC 1 cut(s) 316
BstAFI CTTAAG 1 cut(s) 584
BstAPI GCANNNNNTGC 2 cut(s) 50, 65
BstBI TTCGAA 1 cut(s) 644
BstDEI CTNAG 2 cut(s) 35, 358
BstEII GGTNACC 1 cut(s) 290
BstF5I GGATG 2 cut(s) 148, 870
BstFNI CGCG 1 cut(s) 453
BstHHI GCGC 2 cut(s) 390, 608
BstKTI GATC 2 cut(s) 131, 916
BstMAI GTCTC 1 cut(s) 348
BstMBI GATC 2 cut(s) 128, 913
BstMWI GCNNNNNNNGC 3 cut(s) 50, 65, 77
BstNI CCWGG 3 cut(s) 393, 579, 1000
BstNSI RCATGY 2 cut(s) 388, 715
BstPI GGTNACC 1 cut(s) 290
BstSCI CCNGG 5 cut(s) 391, 577, 733, 952, 998
BstUI CGCG 1 cut(s) 453
BstV1I GCAGC 2 cut(s) 55, 56
BstX2I RGATCY 2 cut(s) 128, 913
BstYI RGATCY 2 cut(s) 128, 913
BsuI GTATCC 1 cut(s) 281
BsuRI GGCC 1 cut(s) 582
BtsCI GGATG 2 cut(s) 148, 870
BtsIMutI CAGTG 4 cut(s) 53, 142, 522, 984
BveI ACCTGC 1 cut(s) 743
CfoI GCGC 2 cut(s) 390, 608
Cfr13I GGNCC 1 cut(s) 236
Csp6I GTAC 1 cut(s) 709
CviAII CATG 4 cut(s) 385, 712, 812, 1023
CviQI GTAC 1 cut(s) 709
DdeI CTNAG 2 cut(s) 35, 358
DpnI GATC 2 cut(s) 130, 915
DpnII GATC 2 cut(s) 128, 913
Eam1104I CTCTTC 1 cut(s) 558
EarI CTCTTC 1 cut(s) 558
Eco147I AGGCCT 1 cut(s) 582
Eco47I GGWCC 1 cut(s) 236
Eco57I CTGAAG 1 cut(s) 761
Eco91I GGTNACC 1 cut(s) 290
EcoO109I RGGNCCY 1 cut(s) 236
EcoO65I GGTNACC 1 cut(s) 290
EcoRII CCWGG 3 cut(s) 391, 577, 998
FaeI CATG 4 cut(s) 388, 715, 815, 1026
FaqI GGGAC 1 cut(s) 750
FatI CATG 4 cut(s) 384, 711, 811, 1022
Fnu4HI GCNGC 2 cut(s) 45, 69
FokI GGATG 2 cut(s) 135, 877
Fsp4HI GCNGC 2 cut(s) 45, 69
FspBI CTAG 3 cut(s) 41, 420, 896
GlaI GCGC 2 cut(s) 389, 607
GluI GCNGC 2 cut(s) 45, 69
GsuI CTGGAG 1 cut(s) 561
HaeIII GGCC 1 cut(s) 582
HapII CCGG 2 cut(s) 734, 954
HhaI GCGC 2 cut(s) 390, 608
Hin1I GRCGYC 1 cut(s) 316
Hin1II CATG 4 cut(s) 388, 715, 815, 1026
Hin6I GCGC 2 cut(s) 388, 606
HinP1I GCGC 2 cut(s) 388, 606
HincII GTYRAC 1 cut(s) 338
HindII GTYRAC 1 cut(s) 338
HindIII AAGCTT 2 cut(s) 647, 831
HinfI GANTC 2 cut(s) 155, 620
HpaII CCGG 2 cut(s) 734, 954
HphI GGTGA 2 cut(s) 767, 835
Hpy166II GTNNAC 2 cut(s) 140, 338
Hpy188I TCNGA 5 cut(s) 250, 331, 496, 907, 1008
Hpy188III TCNNGA 5 cut(s) 152, 376, 676, 896, 917
Hpy8I GTNNAC 2 cut(s) 140, 338
Hpy99I CGWCG 1 cut(s) 682
HpyAV CCTTC 5 cut(s) 373, 484, 689, 862, 940
HpyCH4III ACNGT 2 cut(s) 215, 335
HpyCH4IV ACGT 4 cut(s) 202, 316, 663, 945
HpyCH4V TGCA 6 cut(s) 53, 148, 406, 715, 815, 1022
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 65, 77
HpyF3I CTNAG 2 cut(s) 35, 358
HpySE526I ACGT 4 cut(s) 202, 316, 663, 945
Hsp92I GRCGYC 1 cut(s) 316
Hsp92II CATG 4 cut(s) 388, 715, 815, 1026
HspAI GCGC 2 cut(s) 388, 606
Kzo9I GATC 2 cut(s) 128, 913
LmnI GCTCC 2 cut(s) 580, 698
Lsp1109I GCAGC 2 cut(s) 55, 56
LweI GCATC 3 cut(s) 111, 157, 979
MaeI CTAG 3 cut(s) 41, 420, 896
MaeII ACGT 4 cut(s) 202, 316, 663, 945
MaeIII GTNAC 4 cut(s) 209, 290, 755, 880
MalI GATC 2 cut(s) 130, 915
MboI GATC 2 cut(s) 128, 913
MboII GAAGA 6 cut(s) 179, 361, 364, 575, 704, 754
MflI RGATCY 2 cut(s) 128, 913
MhlI GDGCHC 1 cut(s) 463
MluCI AATT 6 cut(s) 283, 304, 413, 424, 498, 546
MlyI GAGTC 1 cut(s) 149
MseI TTAA 4 cut(s) 549, 585, 873, 948
MslI CAYNNNNRTG 2 cut(s) 119, 907
MspA1I CMGCKG 1 cut(s) 47
MspCI CTTAAG 1 cut(s) 584
MspI CCGG 2 cut(s) 734, 954
MspR9I CCNGG 5 cut(s) 393, 579, 735, 954, 1000
MvaI CCWGG 3 cut(s) 393, 579, 1000
MvnI CGCG 1 cut(s) 453
MwoI GCNNNNNNNGC 3 cut(s) 50, 65, 77
NciI CCSGG 2 cut(s) 735, 954
NdeII GATC 2 cut(s) 128, 913
NlaIII CATG 4 cut(s) 388, 715, 815, 1026
NlaIV GGNNCC 4 cut(s) 700, 915, 958, 1005
NmuCI GTSAC 1 cut(s) 755
NspI RCATGY 2 cut(s) 388, 715
NspV TTCGAA 1 cut(s) 644
PaqCI CACCTGC 1 cut(s) 743
PceI AGGCCT 1 cut(s) 582
PfeI GAWTC 1 cut(s) 620
PflFI GACNNNGTC 1 cut(s) 761
PkrI GCNGC 2 cut(s) 46, 70
PleI GAGTC 1 cut(s) 149
PpsI GAGTC 1 cut(s) 149
PpuMI RGGWCCY 1 cut(s) 236
Psp1406I AACGTT 2 cut(s) 663, 945
Psp5II RGGWCCY 1 cut(s) 236
Psp6I CCWGG 3 cut(s) 391, 577, 998
PspEI GGTNACC 1 cut(s) 290
PspGI CCWGG 3 cut(s) 391, 577, 998
PspN4I GGNNCC 4 cut(s) 700, 915, 958, 1005
PspPI GGNCC 1 cut(s) 236
PspPPI RGGWCCY 1 cut(s) 236
PsuI RGATCY 2 cut(s) 128, 913
PsyI GACNNNGTC 1 cut(s) 761
RsaI GTAC 1 cut(s) 710
RsaNI GTAC 1 cut(s) 709
RseI CAYNNNNRTG 2 cut(s) 119, 907
SaqAI TTAA 4 cut(s) 549, 585, 873, 948
SatI GCNGC 2 cut(s) 45, 69
Sau3AI GATC 2 cut(s) 128, 913
Sau96I GGNCC 1 cut(s) 236
SchI GAGTC 1 cut(s) 149
ScrFI CCNGG 5 cut(s) 393, 579, 735, 954, 1000
SduI GDGCHC 1 cut(s) 463
SfaNI GCATC 3 cut(s) 111, 157, 979
SfuI TTCGAA 1 cut(s) 644
SinI GGWCC 1 cut(s) 236
SmiMI CAYNNNNRTG 2 cut(s) 119, 907
SmlI CTYRAG 1 cut(s) 584
SmoI CTYRAG 1 cut(s) 584
Sse9I AATT 6 cut(s) 283, 304, 413, 424, 498, 546
SseBI AGGCCT 1 cut(s) 582
SsiI CCGC 1 cut(s) 47
SspI AATATT 1 cut(s) 602
SspMI CTAG 3 cut(s) 41, 420, 896
StuI AGGCCT 1 cut(s) 582
StyD4I CCNGG 5 cut(s) 391, 577, 733, 952, 998
TaaI ACNGT 2 cut(s) 215, 335
TaiI ACGT 4 cut(s) 205, 319, 666, 948
TaqI TCGA 5 cut(s) 217, 375, 561, 644, 677
TasI AATT 6 cut(s) 283, 304, 413, 424, 498, 546
TatI WGTACW 1 cut(s) 708
TfiI GAWTC 1 cut(s) 620
Tru1I TTAA 4 cut(s) 549, 585, 873, 948
Tru9I TTAA 4 cut(s) 549, 585, 873, 948
TscAI CASTG 4 cut(s) 60, 142, 522, 991
TseFI GTSAC 1 cut(s) 755
TseI GCWGC 2 cut(s) 44, 68
Tsp45I GTSAC 1 cut(s) 755
TspDTI ATGAA 3 cut(s) 180, 881, 967
TspGWI ACGGA 2 cut(s) 91, 695
TspRI CASTG 4 cut(s) 60, 142, 522, 991
Tth111I GACNNNGTC 1 cut(s) 761
Vha464I CTTAAG 1 cut(s) 584
VpaK11BI GGWCC 1 cut(s) 236
XapI RAATTY 3 cut(s) 283, 424, 498
XbaI TCTAGA 1 cut(s) 895
XceI RCATGY 2 cut(s) 388, 715
XspI CTAG 3 cut(s) 41, 420, 896
ZraI GACGTC 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.