Rmu_sc0013768.1_g000023

Dehydration-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013768.1
OG0000559
Physical Location & Seq
Forward (+)
65846 .. 68194
2349 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013768.1_g000023.1.cds

Sequence Viewer

Length: 963 bp
atggatcagtttcgtcttctttgtctgttttcaattttccatgtggcatcagtagtggtgggaattggttatgctaacaaggtcgatgacgacaagtcctggatgtcttactggaattcagctttgccaaaatctccattgccttccaaagctgtacaaaaacttctaaaccctgcaggaactgatatattgtcacaaggacaaagaagttacacagggaatggaaaggatgatgtagatcgtacacgattgactatcgggaattcttttcctacctctgaagaagtcaacgtggagccaggtttaactacattcttccaaggaaaagatcttcaggatttgggaaaaactgtgacattgcgattcttgaaacccacaagtaacaaggcaactcttttgcctcgtcaacttgcaaagtccatacccttttctagtagcaagttgccagaaattctaacctactttggagtgaaacccaaatcagctgttgcagaaataatgaaaaggacaatcgaagagtgtgaggcaccggccattaaaggcgaagataagtactgcgcaacatcgctagaatccttgattgatttcacggtttcaaagcttgggaagtacgtccaagtttatgcaactgaggccgaaaatgaaaagaaacaagactatagcattgagattactggagtccaaagtattggagacaggtcgattgtgtgccataaggagaactatgtttatggtgtgttttactgccacaaattctatggcacaacaacaagagcttacatggttccattggtaggtgctgatggggttacaacagccaaagcagtagctatttgccatactgataccagtagctggaaccctaagcatttggcctttcaagtcctcaaaataaagcctggaaatacaatcccagtctgtcattttctgtccactacaagtcttttgtgggctcctatgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BURP

Protein Analysis

320

Amino Acids

35.39

Weight (kDa)

8.67

Isoelectric Point (pI)

43.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000559)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25610
fragaria_vesca FvH4_2g36250 FvH4_2g36250 FvH4_2g36250 FvH4_7g14680
malus_domestica MD04G1018200.v1.1 MD08G1119600.v1.1 MD08G1119700.v1.1 MD08G1119800.v1.1 MD08G1199500.v1.1 MD08G1203300.v1.1 MD15G1098800.v1.1 MD15G1219500.v1.1
prunus_persica Prupe.1G453500_v2.0.a1 Prupe.1G453600_v2.0.a1 Prupe.1G453700_v2.0.a1 Prupe.1G465600_v2.0.a1 Prupe.1G475100_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475400_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475800_v2.0.a1 Prupe.1G475900_v2.0.a1 Prupe.1G476200_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476700_v2.0.a1 Prupe.1G477000_v2.0.a1 Prupe.1G477200_v2.0.a1 Prupe.1G477400_v2.0.a1 Prupe.1G477800_v2.0.a1 Prupe.4G169000_v2.0.a1 Prupe.4G257600_v2.0.a1
pyrus_communis pycom08g16760 pycom14g01650 pycom15g09040 pycom15g09070
rosa_chinensis RchiOBHm_Chr1g0356161 RchiOBHm_Chr1g0356461 RchiOBHm_Chr5g0051031
rosa_laevigata RLG00000010869 RLG00000028095 RLG00000028100 RLG00000034755
rosa_multiflora Rmu_co8314191.1_g000001 Rmu_co8337567.1_g000001 Rmu_sc0000281.1_g000019 Rmu_sc0000446.1_g000034 Rmu_sc0000782.1_g000019 Rmu_sc0001809.1_g000027 Rmu_sc0013768.1_g000023
rosa_roxburghii Rroxscaffold_1G00029620 Rroxscaffold_4G00299510 Rroxscaffold_4G00299720 Rroxscaffold_7G00162480
rosa_rugosa Rorug01G0249900 Rorug01G0250000 Rorug05G0572100 Rorug06G0342600
rosa_samantha Rh1AG262800 Rh1AG263300 Rh1AG263600 Rh1BG231500 Rh1CG246400 Rh1CG246900 Rh1DG259200 Rh5AG337800 Rh5BG347500 Rh5CG374800 Rh5DG360600 Rh6BG447100 Rh6CG468100 Rh6DG454900
rosa_wichuraiana Rw1G023250 Rw1G023300 Rw5G031920 Rw6G039620 Rw7G036720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 559
AccB1I GGYRCC 1 cut(s) 526
AccB7I CCANNNNNTGG 1 cut(s) 855
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 531
AcsI RAATTY 4 cut(s) 115, 262, 450, 752
AcuI CTGAAG 2 cut(s) 300, 317
AfaI GTAC 4 cut(s) 156, 244, 554, 611
AfiI CCNNNNNNNGG 2 cut(s) 794, 855
AgsI TTSAA 4 cut(s) 33, 370, 597, 881
AhdI GACNNNNNGTC 1 cut(s) 94
AjnI CCWGG 3 cut(s) 98, 298, 898
AluBI AGCT 7 cut(s) 122, 152, 485, 601, 776, 830, 855
AluI AGCT 7 cut(s) 122, 152, 485, 601, 776, 830, 855
Alw26I GTCTC 1 cut(s) 687
AlwI GGATC 1 cut(s) 12
AlwNI CAGNNNCTG 2 cut(s) 182, 855
AoxI GGCC 3 cut(s) 531, 633, 873
ApoI RAATTY 4 cut(s) 115, 262, 450, 752
AspLEI GCGC 1 cut(s) 560
BanI GGYRCC 1 cut(s) 526
BanII GRGCYC 1 cut(s) 955
BarI GAAGNNNNNNTAC 2 cut(s) 147, 179
BbsI GAAGAC 1 cut(s) 8
BccI CCATC 1 cut(s) 797
BciT130I CCWGG 3 cut(s) 100, 300, 900
BcoDI GTCTC 1 cut(s) 687
BfaI CTAG 2 cut(s) 432, 569
BfmI CTRYAG 2 cut(s) 174, 658
BglII AGATCT 1 cut(s) 328
BmcAI AGTACT 1 cut(s) 554
Bme1390I CCNGG 3 cut(s) 100, 300, 900
BmeRI GACNNNNNGTC 1 cut(s) 94
BmiI GGNNCC 5 cut(s) 297, 528, 786, 860, 954
BmrFI CCNGG 3 cut(s) 100, 300, 900
BmrI ACTGGG 1 cut(s) 908
BmsI GCATC 1 cut(s) 56
BmuI ACTGGG 1 cut(s) 908
BpiI GAAGAC 1 cut(s) 8
BpmI CTGGAG 1 cut(s) 696
Bpu10I CCTNAGC 1 cut(s) 864
BsaBI GATNNNNATC 1 cut(s) 237
BsaJI CCNNGG 1 cut(s) 319
Bsc4I CCNNNNNNNGG 2 cut(s) 794, 855
Bse118I RCCGGY 1 cut(s) 529
Bse1I ACTGG 4 cut(s) 116, 679, 849, 914
Bse3DI GCAATG 2 cut(s) 137, 356
Bse8I GATNNNNATC 1 cut(s) 237
BseBI CCWGG 3 cut(s) 100, 300, 900
BseDI CCNNGG 1 cut(s) 319
BseGI GGATG 2 cut(s) 108, 235
BseJI GATNNNNATC 1 cut(s) 237
BseLI CCNNNNNNNGG 2 cut(s) 794, 855
BseMI GCAATG 2 cut(s) 137, 356
BseMII CTCAG 1 cut(s) 621
BseNI ACTGG 4 cut(s) 116, 679, 849, 914
BshFI GGCC 3 cut(s) 533, 635, 875
BshNI GGYRCC 1 cut(s) 526
BsiSI CCGG 1 cut(s) 530
BslI CCNNNNNNNGG 2 cut(s) 794, 855
BsmAI GTCTC 1 cut(s) 687
BsnI GGCC 3 cut(s) 533, 635, 875
Bsp1286I GDGCHC 1 cut(s) 955
Bsp1407I TGTACA 1 cut(s) 154
Bsp143I GATC 3 cut(s) 4, 238, 328
BspANI GGCC 3 cut(s) 533, 635, 875
BspCNI CTCAG 1 cut(s) 622
BspLI GGNNCC 5 cut(s) 297, 528, 786, 860, 954
BspMAI CTGCAG 1 cut(s) 178
BspPI GGATC 1 cut(s) 12
BspT107I GGYRCC 1 cut(s) 526
BsrDI GCAATG 2 cut(s) 137, 356
BsrFI RCCGGY 1 cut(s) 529
BsrGI TGTACA 1 cut(s) 154
BsrI ACTGG 4 cut(s) 116, 679, 849, 914
BssAI RCCGGY 1 cut(s) 529
BssECI CCNNGG 1 cut(s) 319
BssMI GATC 3 cut(s) 4, 238, 328
BssT1I CCWWGG 1 cut(s) 319
Bst2UI CCWGG 3 cut(s) 100, 300, 900
Bst4CI ACNGT 2 cut(s) 352, 592
Bst6I CTCTTC 1 cut(s) 510
BstAUI TGTACA 1 cut(s) 154
BstDEI CTNAG 2 cut(s) 630, 864
BstF5I GGATG 2 cut(s) 108, 235
BstHHI GCGC 1 cut(s) 560
BstKTI GATC 3 cut(s) 7, 241, 331
BstMAI GTCTC 1 cut(s) 687
BstMBI GATC 3 cut(s) 4, 238, 328
BstMWI GCNNNNNNNGC 1 cut(s) 632
BstNI CCWGG 3 cut(s) 100, 300, 900
BstSCI CCNGG 3 cut(s) 98, 298, 898
BstSFI CTRYAG 2 cut(s) 174, 658
BstV2I GAAGAC 1 cut(s) 8
BstX2I RGATCY 1 cut(s) 328
BstXI CCANNNNNNTGG 1 cut(s) 689
BstYI RGATCY 1 cut(s) 328
BsuRI GGCC 3 cut(s) 533, 635, 875
BtgZI GCGATG 1 cut(s) 549
BtsCI GGATG 2 cut(s) 108, 235
CaiI CAGNNNCTG 2 cut(s) 182, 855
CfoI GCGC 1 cut(s) 560
Cfr10I RCCGGY 1 cut(s) 529
Csp6I GTAC 4 cut(s) 155, 243, 553, 610
CviAII CATG 2 cut(s) 41, 781
CviQI GTAC 4 cut(s) 155, 243, 553, 610
DdeI CTNAG 2 cut(s) 630, 864
DpnI GATC 3 cut(s) 6, 240, 330
DpnII GATC 3 cut(s) 4, 238, 328
DriI GACNNNNNGTC 1 cut(s) 94
EaeI YGGCCR 1 cut(s) 531
Eam1104I CTCTTC 1 cut(s) 510
Eam1105I GACNNNNNGTC 1 cut(s) 94
EarI CTCTTC 1 cut(s) 510
Eco130I CCWWGG 1 cut(s) 319
Eco24I GRGCYC 1 cut(s) 955
Eco57I CTGAAG 2 cut(s) 300, 317
EcoRI GAATTC 2 cut(s) 115, 262
EcoRII CCWGG 3 cut(s) 98, 298, 898
EcoT14I CCWWGG 1 cut(s) 319
EcoT38I GRGCYC 1 cut(s) 955
ErhI CCWWGG 1 cut(s) 319
FaeI CATG 2 cut(s) 44, 784
FatI CATG 2 cut(s) 40, 780
FokI GGATG 2 cut(s) 115, 242
FriOI GRGCYC 1 cut(s) 955
FspBI CTAG 2 cut(s) 432, 569
FspI TGCGCA 1 cut(s) 559
GlaI GCGC 1 cut(s) 559
GsuI CTGGAG 1 cut(s) 696
HaeIII GGCC 3 cut(s) 533, 635, 875
HapII CCGG 1 cut(s) 530
HhaI GCGC 1 cut(s) 560
Hin1II CATG 2 cut(s) 44, 784
Hin6I GCGC 1 cut(s) 558
HinP1I GCGC 1 cut(s) 558
HincII GTYRAC 2 cut(s) 289, 407
HindII GTYRAC 2 cut(s) 289, 407
HindIII AAGCTT 1 cut(s) 599
HinfI GANTC 3 cut(s) 363, 572, 678
HpaII CCGG 1 cut(s) 530
Hpy166II GTNNAC 4 cut(s) 245, 289, 407, 933
Hpy188I TCNGA 1 cut(s) 280
Hpy188III TCNNGA 3 cut(s) 259, 335, 367
Hpy8I GTNNAC 4 cut(s) 245, 289, 407, 933
HpyAV CCTTC 1 cut(s) 153
HpyCH4III ACNGT 2 cut(s) 352, 592
HpyCH4IV ACGT 2 cut(s) 291, 612
HpyCH4V TGCA 4 cut(s) 176, 413, 491, 626
HpyF10VI GCNNNNNNNGC 1 cut(s) 632
HpyF3I CTNAG 2 cut(s) 630, 864
HpySE526I ACGT 2 cut(s) 291, 612
Hsp92II CATG 2 cut(s) 44, 784
HspAI GCGC 1 cut(s) 558
Kzo9I GATC 3 cut(s) 4, 238, 328
LmnI GCTCC 2 cut(s) 295, 958
LweI GCATC 1 cut(s) 56
MaeI CTAG 2 cut(s) 432, 569
MaeII ACGT 2 cut(s) 291, 612
MaeIII GTNAC 5 cut(s) 192, 209, 352, 380, 808
MalI GATC 3 cut(s) 6, 240, 330
MboI GATC 3 cut(s) 4, 238, 328
MboII GAAGA 6 cut(s) 8, 293, 307, 323, 527, 557
MflI RGATCY 1 cut(s) 328
MhlI GDGCHC 1 cut(s) 955
MluCI AATT 6 cut(s) 33, 63, 115, 262, 450, 752
MlyI GAGTC 1 cut(s) 687
MnlI CCTC 5 cut(s) 286, 411, 517, 625, 896
MseI TTAA 2 cut(s) 305, 537
MspA1I CMGCKG 1 cut(s) 485
MspI CCGG 1 cut(s) 530
MspR9I CCNGG 3 cut(s) 100, 300, 900
MvaI CCWGG 3 cut(s) 100, 300, 900
MwoI GCNNNNNNNGC 1 cut(s) 632
NdeII GATC 3 cut(s) 4, 238, 328
NlaIII CATG 2 cut(s) 44, 784
NlaIV GGNNCC 5 cut(s) 297, 528, 786, 860, 954
NmuCI GTSAC 2 cut(s) 192, 352
NsbI TGCGCA 1 cut(s) 559
PfeI GAWTC 2 cut(s) 363, 572
PflMI CCANNNNNTGG 1 cut(s) 855
PfoI TCCNGGA 1 cut(s) 98
PleI GAGTC 1 cut(s) 686
PpsI GAGTC 1 cut(s) 686
Psp6I CCWGG 3 cut(s) 98, 298, 898
PspGI CCWGG 3 cut(s) 98, 298, 898
PspN4I GGNNCC 5 cut(s) 297, 528, 786, 860, 954
PstI CTGCAG 1 cut(s) 178
PstNI CAGNNNCTG 2 cut(s) 182, 855
PsuI RGATCY 1 cut(s) 328
PvuII CAGCTG 1 cut(s) 485
RsaI GTAC 4 cut(s) 156, 244, 554, 611
RsaNI GTAC 4 cut(s) 155, 243, 553, 610
SaqAI TTAA 2 cut(s) 305, 537
Sau3AI GATC 3 cut(s) 4, 238, 328
SbfI CCTGCAGG 1 cut(s) 178
ScaI AGTACT 1 cut(s) 554
SchI GAGTC 1 cut(s) 687
ScrFI CCNGG 3 cut(s) 100, 300, 900
SdaI CCTGCAGG 1 cut(s) 178
SduI GDGCHC 1 cut(s) 955
SfaNI GCATC 1 cut(s) 56
SfcI CTRYAG 2 cut(s) 174, 658
Sse8387I CCTGCAGG 1 cut(s) 178
Sse9I AATT 6 cut(s) 33, 63, 115, 262, 450, 752
SspMI CTAG 2 cut(s) 432, 569
StyD4I CCNGG 3 cut(s) 98, 298, 898
StyI CCWWGG 1 cut(s) 319
TaaI ACNGT 2 cut(s) 352, 592
TaiI ACGT 2 cut(s) 294, 615
TaqI TCGA 3 cut(s) 84, 513, 701
TasI AATT 6 cut(s) 33, 63, 115, 262, 450, 752
TatI WGTACW 2 cut(s) 154, 552
TfiI GAWTC 2 cut(s) 363, 572
Tru1I TTAA 2 cut(s) 305, 537
Tru9I TTAA 2 cut(s) 305, 537
TseFI GTSAC 2 cut(s) 192, 352
Tsp45I GTSAC 2 cut(s) 192, 352
TspDTI ATGAA 2 cut(s) 515, 657
Van91I CCANNNNNTGG 1 cut(s) 855
XapI RAATTY 4 cut(s) 115, 262, 450, 752
XcmI CCANNNNNNNNNTGG 1 cut(s) 755
XspI CTAG 2 cut(s) 432, 569
ZrmI AGTACT 1 cut(s) 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.