Prupe.1G475200_v2.0.a1

BURP domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000559
Physical Location & Seq
Forward (+)
39514088 .. 39517362
3275 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G475200.2

Sequence Viewer

Length: 954 bp
ATGGGGTTTCATCTCCCACTCATCTTTGCTCTTCTCAGTCTAGCAGCGGTGGCACTGGCAAACCATGCTGCTCAACCAGCAGCTCAACTTTACTGGAACTCCGTCCTGCCGAACACACAGATGCCAAGAACTATCAGTGAACTTCTGCATCTTGAAAAGAGCACAAATATCATGAATGCTGTTGGGAATGGAAAGCCAACTGACCACAAGGGAAAACCTGAAATAAACGCATTGTTTAGCGGATACACAATTCAAGTACAGTATGCAGGAGTTCCTAATTCTGACAATCAACTCCAGTATTATAAAAACATAACTATTTTCTTCTTGGGGAAGGACATGCGCCTTGGCGCAACAATGAACTTCCAATTCCCTAGAAATTCAAACACGGCTACTTTCCTGCCACGCGAAAGTGCTCAATCAATCCCCTTCTCCTCTAACAAACTATCAGAAATTTTCAAACATTTTTCAGTGAAGCCAACATCTGTGGAAGCCAAAACAATTAAGAAAACAATCGAAGAGTGTGAAGCTCCAGGCATTAAGGGAGGGGAAAGATATTGCGCCACATCTTTAGAATCAATGGTTGATTTTAGCACTTCCAAGCTTAGAACAAGAAACGTTCAAGCAATCTCGACTGAGGTATTGGAAAAAGGAACTGCCATGTCCATGCACAAGTATACAACAATGCCGGGACTGAAGAAGTTGGCAGGTGACAAAGTCGTTGTGTGTCATAAGGAGAACTATCCCTATGCTGTGTTTTTCTGCCATGCAATAAAACAAACAGCAGCTTATGTTCTCTCCCTGAAAGGCGATGATGGGGTGAAGGTTAAAGCAGTAACCATCTGCCATCTAGACACATCAGAATGGAACCCAAAGCATTTGGCCTTCCAAATCCTCAAAGTTAAGCCCGGAACCATTCCCATCTGCCATTTCCTTTCCACAGATGCTATTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BURP

Protein Analysis

318

Amino Acids

35.0

Weight (kDa)

9.22

Isoelectric Point (pI)

32.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000559)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25610
fragaria_vesca FvH4_2g36250 FvH4_2g36250 FvH4_2g36250 FvH4_7g14680
malus_domestica MD04G1018200.v1.1 MD08G1119600.v1.1 MD08G1119700.v1.1 MD08G1119800.v1.1 MD08G1199500.v1.1 MD08G1203300.v1.1 MD15G1098800.v1.1 MD15G1219500.v1.1
prunus_persica Prupe.1G453500_v2.0.a1 Prupe.1G453600_v2.0.a1 Prupe.1G453700_v2.0.a1 Prupe.1G465600_v2.0.a1 Prupe.1G475100_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475400_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475800_v2.0.a1 Prupe.1G475900_v2.0.a1 Prupe.1G476200_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476700_v2.0.a1 Prupe.1G477000_v2.0.a1 Prupe.1G477200_v2.0.a1 Prupe.1G477400_v2.0.a1 Prupe.1G477800_v2.0.a1 Prupe.4G169000_v2.0.a1 Prupe.4G257600_v2.0.a1
pyrus_communis pycom08g16760 pycom14g01650 pycom15g09040 pycom15g09070
rosa_chinensis RchiOBHm_Chr1g0356161 RchiOBHm_Chr1g0356461 RchiOBHm_Chr5g0051031
rosa_laevigata RLG00000010869 RLG00000028095 RLG00000028100 RLG00000034755
rosa_multiflora Rmu_co8314191.1_g000001 Rmu_co8337567.1_g000001 Rmu_sc0000281.1_g000019 Rmu_sc0000446.1_g000034 Rmu_sc0000782.1_g000019 Rmu_sc0001809.1_g000027 Rmu_sc0013768.1_g000023
rosa_roxburghii Rroxscaffold_1G00029620 Rroxscaffold_4G00299510 Rroxscaffold_4G00299720 Rroxscaffold_7G00162480
rosa_rugosa Rorug01G0249900 Rorug01G0250000 Rorug05G0572100 Rorug06G0342600
rosa_samantha Rh1AG262800 Rh1AG263300 Rh1AG263600 Rh1BG231500 Rh1CG246400 Rh1CG246900 Rh1DG259200 Rh5AG337800 Rh5BG347500 Rh5CG374800 Rh5DG360600 Rh6BG447100 Rh6CG468100 Rh6DG454900
rosa_wichuraiana Rw1G023250 Rw1G023300 Rw5G031920 Rw6G039620 Rw7G036720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 303
AarI CACCTGC 1 cut(s) 695
Acc36I ACCTGC 1 cut(s) 695
AccI GTMKAC 1 cut(s) 674
AccII CGCG 1 cut(s) 405
AciI CCGC 2 cut(s) 47, 240
AclI AACGTT 1 cut(s) 615
AcsI RAATTY 2 cut(s) 376, 450
AcuI CTGAAG 1 cut(s) 713
AfaI GTAC 1 cut(s) 258
AgsI TTSAA 5 cut(s) 155, 254, 381, 457, 620
AjnI CCWGG 1 cut(s) 529
AluBI AGCT 4 cut(s) 83, 527, 601, 785
AluI AGCT 4 cut(s) 83, 527, 601, 785
Alw21I GWGCWC 2 cut(s) 164, 415
AoxI GGCC 1 cut(s) 879
ApeKI GCWGC 4 cut(s) 44, 68, 80, 782
ApoI RAATTY 2 cut(s) 376, 450
AspLEI GCGC 3 cut(s) 342, 350, 560
AsuC2I CCSGG 2 cut(s) 687, 906
AsuHPI GGTGA 2 cut(s) 719, 829
Bbv12I GWGCWC 2 cut(s) 164, 415
BbvI GCAGC 4 cut(s) 55, 56, 92, 794
BccI CCATC 4 cut(s) 806, 845, 852, 926
BceAI ACGGC 1 cut(s) 402
BciT130I CCWGG 1 cut(s) 531
BciVI GTATCC 1 cut(s) 236
BcnI CCSGG 2 cut(s) 687, 906
BfaI CTAG 3 cut(s) 41, 372, 848
BfuAI ACCTGC 1 cut(s) 695
BfuI GTATCC 1 cut(s) 236
BisI GCNGC 4 cut(s) 45, 69, 81, 783
BlsI GCNGC 4 cut(s) 46, 70, 82, 784
Bme1390I CCNGG 3 cut(s) 531, 687, 906
BmiI GGNNCC 2 cut(s) 866, 910
BmrFI CCNGG 3 cut(s) 531, 687, 906
BmsI GCATC 3 cut(s) 111, 157, 931
BpmI CTGGAG 2 cut(s) 278, 513
BpuMI CCSGG 2 cut(s) 687, 906
BsaJI CCNNGG 1 cut(s) 343
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bse1I ACTGG 3 cut(s) 60, 98, 295
BseBI CCWGG 1 cut(s) 531
BseDI CCNNGG 1 cut(s) 343
BseMII CTCAG 2 cut(s) 49, 624
BseNI ACTGG 3 cut(s) 60, 98, 295
BseRI GAGGAG 1 cut(s) 421
BseXI GCAGC 4 cut(s) 55, 56, 92, 794
Bsh1236I CGCG 1 cut(s) 405
BshFI GGCC 1 cut(s) 881
BsiHKAI GWGCWC 2 cut(s) 164, 415
BsiSI CCGG 2 cut(s) 686, 906
BslFI GGGAC 1 cut(s) 702
BsmFI GGGAC 1 cut(s) 702
BsmI GAATGC 1 cut(s) 181
BsnI GGCC 1 cut(s) 881
Bsp1286I GDGCHC 2 cut(s) 164, 415
BspACI CCGC 2 cut(s) 47, 240
BspANI GGCC 1 cut(s) 881
BspCNI CTCAG 2 cut(s) 48, 625
BspFNI CGCG 1 cut(s) 405
BspHI TCATGA 1 cut(s) 171
BspLI GGNNCC 2 cut(s) 866, 910
BspMI ACCTGC 1 cut(s) 695
BspQI GCTCTTC 1 cut(s) 36
BsrI ACTGG 3 cut(s) 60, 98, 295
BssECI CCNNGG 1 cut(s) 343
BssNAI GTATAC 1 cut(s) 675
BssT1I CCWWGG 1 cut(s) 343
Bst1107I GTATAC 1 cut(s) 675
Bst2UI CCWGG 1 cut(s) 531
Bst4CI ACNGT 1 cut(s) 261
Bst6I CTCTTC 2 cut(s) 36, 510
BstAPI GCANNNNNTGC 1 cut(s) 65
BstDEI CTNAG 3 cut(s) 35, 602, 633
BstFNI CGCG 1 cut(s) 405
BstHHI GCGC 3 cut(s) 342, 350, 560
BstMWI GCNNNNNNNGC 3 cut(s) 50, 65, 77
BstNI CCWGG 1 cut(s) 531
BstNSI RCATGY 1 cut(s) 340
BstSCI CCNGG 3 cut(s) 529, 685, 904
BstUI CGCG 1 cut(s) 405
BstV1I GCAGC 4 cut(s) 55, 56, 92, 794
BstZ17I GTATAC 1 cut(s) 675
BsuI GTATCC 1 cut(s) 236
BsuRI GGCC 1 cut(s) 881
BtgZI GCGATG 1 cut(s) 822
BtsIMutI CAGTG 3 cut(s) 53, 142, 474
BveI ACCTGC 1 cut(s) 695
CciI TCATGA 1 cut(s) 171
CfoI GCGC 3 cut(s) 342, 350, 560
Csp6I GTAC 1 cut(s) 257
CspCI CAANNNNNGTGG 2 cut(s) 465, 500
CviAII CATG 7 cut(s) 65, 172, 337, 658, 664, 764, 951
CviQI GTAC 1 cut(s) 257
DdeI CTNAG 3 cut(s) 35, 602, 633
Eam1104I CTCTTC 2 cut(s) 36, 510
EarI CTCTTC 2 cut(s) 36, 510
Eco130I CCWWGG 1 cut(s) 343
Eco57I CTGAAG 1 cut(s) 713
EcoRII CCWGG 1 cut(s) 529
EcoT14I CCWWGG 1 cut(s) 343
ErhI CCWWGG 1 cut(s) 343
FaeI CATG 7 cut(s) 68, 175, 340, 661, 667, 767, 954
FaqI GGGAC 1 cut(s) 702
FatI CATG 7 cut(s) 64, 171, 336, 657, 663, 763, 950
FblI GTMKAC 1 cut(s) 674
Fnu4HI GCNGC 4 cut(s) 45, 69, 81, 783
Fsp4HI GCNGC 4 cut(s) 45, 69, 81, 783
FspBI CTAG 3 cut(s) 41, 372, 848
GlaI GCGC 3 cut(s) 341, 349, 559
GluI GCNGC 4 cut(s) 45, 69, 81, 783
GsuI CTGGAG 2 cut(s) 278, 513
HaeIII GGCC 1 cut(s) 881
HapII CCGG 2 cut(s) 686, 906
HhaI GCGC 3 cut(s) 342, 350, 560
Hin1II CATG 7 cut(s) 68, 175, 340, 661, 667, 767, 954
Hin6I GCGC 3 cut(s) 340, 348, 558
HinP1I GCGC 3 cut(s) 340, 348, 558
HindIII AAGCTT 1 cut(s) 599
HinfI GANTC 1 cut(s) 572
HpaII CCGG 2 cut(s) 686, 906
HphI GGTGA 2 cut(s) 719, 829
Hpy166II GTNNAC 2 cut(s) 140, 675
Hpy188I TCNGA 3 cut(s) 283, 448, 859
Hpy188III TCNNGA 4 cut(s) 152, 172, 628, 848
Hpy8I GTNNAC 2 cut(s) 140, 675
HpyAV CCTTC 4 cut(s) 325, 436, 814, 892
HpyCH4III ACNGT 1 cut(s) 261
HpyCH4IV ACGT 1 cut(s) 615
HpyCH4V TGCA 5 cut(s) 148, 266, 667, 767, 950
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 65, 77
HpyF3I CTNAG 3 cut(s) 35, 602, 633
HpySE526I ACGT 1 cut(s) 615
Hsp92II CATG 7 cut(s) 68, 175, 340, 661, 667, 767, 954
HspAI GCGC 3 cut(s) 340, 348, 558
LguI GCTCTTC 1 cut(s) 36
LmnI GCTCC 1 cut(s) 532
Lsp1109I GCAGC 4 cut(s) 55, 56, 92, 794
LweI GCATC 3 cut(s) 111, 157, 931
MaeI CTAG 3 cut(s) 41, 372, 848
MaeII ACGT 1 cut(s) 615
MaeIII GTNAC 2 cut(s) 707, 832
MboII GAAGA 4 cut(s) 23, 313, 527, 706
MhlI GDGCHC 2 cut(s) 164, 415
MluCI AATT 6 cut(s) 249, 277, 365, 376, 450, 498
MnlI CCTC 4 cut(s) 442, 536, 628, 902
MseI TTAA 4 cut(s) 501, 537, 825, 900
MslI CAYNNNNRTG 3 cut(s) 119, 662, 859
MspA1I CMGCKG 1 cut(s) 47
MspI CCGG 2 cut(s) 686, 906
MspR9I CCNGG 3 cut(s) 531, 687, 906
Mva1269I GAATGC 1 cut(s) 181
MvaI CCWGG 1 cut(s) 531
MvnI CGCG 1 cut(s) 405
MwoI GCNNNNNNNGC 3 cut(s) 50, 65, 77
NciI CCSGG 2 cut(s) 687, 906
NlaIII CATG 7 cut(s) 68, 175, 340, 661, 667, 767, 954
NlaIV GGNNCC 2 cut(s) 866, 910
NmuCI GTSAC 1 cut(s) 707
NspI RCATGY 1 cut(s) 340
PagI TCATGA 1 cut(s) 171
PaqCI CACCTGC 1 cut(s) 695
PciSI GCTCTTC 1 cut(s) 36
PctI GAATGC 1 cut(s) 181
PfeI GAWTC 1 cut(s) 572
PflFI GACNNNGTC 1 cut(s) 713
PkrI GCNGC 4 cut(s) 46, 70, 82, 784
PsiI TTATAA 1 cut(s) 303
Psp1406I AACGTT 1 cut(s) 615
Psp6I CCWGG 1 cut(s) 529
PspGI CCWGG 1 cut(s) 529
PspN4I GGNNCC 2 cut(s) 866, 910
PsyI GACNNNGTC 1 cut(s) 713
RsaI GTAC 1 cut(s) 258
RsaNI GTAC 1 cut(s) 257
RseI CAYNNNNRTG 3 cut(s) 119, 662, 859
SapI GCTCTTC 1 cut(s) 36
SaqAI TTAA 4 cut(s) 501, 537, 825, 900
SatI GCNGC 4 cut(s) 45, 69, 81, 783
ScrFI CCNGG 3 cut(s) 531, 687, 906
SduI GDGCHC 2 cut(s) 164, 415
SetI ASST 9 cut(s) 85, 220, 529, 603, 618, 639, 709, 787, 825
SfaNI GCATC 3 cut(s) 111, 157, 931
SmiMI CAYNNNNRTG 3 cut(s) 119, 662, 859
Sse9I AATT 6 cut(s) 249, 277, 365, 376, 450, 498
SsiI CCGC 2 cut(s) 47, 240
SspMI CTAG 3 cut(s) 41, 372, 848
StyD4I CCNGG 3 cut(s) 529, 685, 904
StyI CCWWGG 1 cut(s) 343
TaaI ACNGT 1 cut(s) 261
TaiI ACGT 1 cut(s) 618
TaqI TCGA 2 cut(s) 513, 629
TasI AATT 6 cut(s) 249, 277, 365, 376, 450, 498
TatI WGTACW 1 cut(s) 256
TfiI GAWTC 1 cut(s) 572
Tru1I TTAA 4 cut(s) 501, 537, 825, 900
Tru9I TTAA 4 cut(s) 501, 537, 825, 900
TscAI CASTG 3 cut(s) 60, 142, 474
TseFI GTSAC 1 cut(s) 707
TseI GCWGC 4 cut(s) 44, 68, 80, 782
Tsp45I GTSAC 1 cut(s) 707
TspDTI ATGAA 2 cut(s) 188, 371
TspGWI ACGGA 1 cut(s) 91
TspRI CASTG 3 cut(s) 60, 142, 474
Tth111I GACNNNGTC 1 cut(s) 713
XapI RAATTY 2 cut(s) 376, 450
XbaI TCTAGA 1 cut(s) 847
XceI RCATGY 1 cut(s) 340
XmiI GTMKAC 1 cut(s) 674
XspI CTAG 3 cut(s) 41, 372, 848
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.