Rmu_sc0000782.1_g000019

Dehydration-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000782.1
OG0000559
Physical Location & Seq
Reverse (-)
125324 .. 128180
2857 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000782.1_g000019.1.cds

Sequence Viewer

Length: 1110 bp
atgtggcaagaattggcttgcggaaattatttgaactcccatgatcgtagtcatcagggggaggtgcagacatcagggggagatgtctacatgttcgtctcgaatcgtgaaggcggtcggctacttcagttatcaacctcctttattagcatggaatactttcgcctcgtttcggtctgcgcttttctctatgtcgcattagcactgttgggaagaagctatgcctctaatgatgtatcatggggttcttactggcagtcagctttcccaaaaactgcgatacccaaaaccctacaagaacttctacatccggacaactggatcgaagggaaaagtagatacactgggttcagcaaggacgatctaaacatcaacaccttgctagtttccggatctgcatttccaactattggtaaagatagctatgccgaggccgcctccggaaaaatccaagtggagccagatgtgactactttctttttagaaaaggatctgcgactggggaagaagatgaccctgcacttccccaaaaccacagttgcctccgagatcttgcctcgtaaagtcgccaagtccatacccttttcgacgagcaagctgccgcagattctcaaccactttgcggtgaaacccaactcagtggaagcagaagtgatcaaacagacgatcgaagactgcgaggcgccgggcatcaaaggggaagacaagtactgcgccacgtcgttggaatccttggtcgattttaccgtttcgaagctcggtaaatacgtgcaggtgtattccacagaggtcgaaaacgaaaacaaacaggaatataagattggaaaaggagctgtgcagcgaattggagacaggtcagtggtttgtcacaagcagaagtacgtgtatgcggttttttattgccatgaaattcactcaactagggcttacgtggttcctttggtgggtgctgatggaactaaagctgaagcggtagctgtttgccacactgatacaagaacatggaacaataagcattttgctttccaggccctcaaaataaagccgggaacacttcctatttgtcacttcttgcctagtggaaaccttgtgtgggttccaaacaagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BURP

Protein Analysis

369

Amino Acids

41.17

Weight (kDa)

8.46

Isoelectric Point (pI)

36.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000559)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25610
fragaria_vesca FvH4_2g36250 FvH4_2g36250 FvH4_2g36250 FvH4_7g14680
malus_domestica MD04G1018200.v1.1 MD08G1119600.v1.1 MD08G1119700.v1.1 MD08G1119800.v1.1 MD08G1199500.v1.1 MD08G1203300.v1.1 MD15G1098800.v1.1 MD15G1219500.v1.1
prunus_persica Prupe.1G453500_v2.0.a1 Prupe.1G453600_v2.0.a1 Prupe.1G453700_v2.0.a1 Prupe.1G465600_v2.0.a1 Prupe.1G475100_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475400_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475800_v2.0.a1 Prupe.1G475900_v2.0.a1 Prupe.1G476200_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476700_v2.0.a1 Prupe.1G477000_v2.0.a1 Prupe.1G477200_v2.0.a1 Prupe.1G477400_v2.0.a1 Prupe.1G477800_v2.0.a1 Prupe.4G169000_v2.0.a1 Prupe.4G257600_v2.0.a1
pyrus_communis pycom08g16760 pycom14g01650 pycom15g09040 pycom15g09070
rosa_chinensis RchiOBHm_Chr1g0356161 RchiOBHm_Chr1g0356461 RchiOBHm_Chr5g0051031
rosa_laevigata RLG00000010869 RLG00000028095 RLG00000028100 RLG00000034755
rosa_multiflora Rmu_co8314191.1_g000001 Rmu_co8337567.1_g000001 Rmu_sc0000281.1_g000019 Rmu_sc0000446.1_g000034 Rmu_sc0000782.1_g000019 Rmu_sc0001809.1_g000027 Rmu_sc0013768.1_g000023
rosa_roxburghii Rroxscaffold_1G00029620 Rroxscaffold_4G00299510 Rroxscaffold_4G00299720 Rroxscaffold_7G00162480
rosa_rugosa Rorug01G0249900 Rorug01G0250000 Rorug05G0572100 Rorug06G0342600
rosa_samantha Rh1AG262800 Rh1AG263300 Rh1AG263600 Rh1BG231500 Rh1CG246400 Rh1CG246900 Rh1DG259200 Rh5AG337800 Rh5BG347500 Rh5CG374800 Rh5DG360600 Rh6BG447100 Rh6CG468100 Rh6DG454900
rosa_wichuraiana Rw1G023250 Rw1G023300 Rw5G031920 Rw6G039620 Rw7G036720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 763
Acc36I ACCTGC 1 cut(s) 763
AccB1I GGYRCC 1 cut(s) 682
AccB7I CCANNNNNTGG 1 cut(s) 410
AccI GTMKAC 1 cut(s) 87
AccIII TCCGGA 3 cut(s) 310, 389, 440
AciI CCGC 7 cut(s) 21, 114, 435, 602, 623, 890, 971
AclWI GGATC 3 cut(s) 329, 400, 498
AcsI RAATTY 1 cut(s) 909
AcuI CTGAAG 2 cut(s) 110, 987
AcyI GRCGYC 1 cut(s) 683
AfaI GTAC 2 cut(s) 710, 881
AfiI CCNNNNNNNGG 5 cut(s) 172, 410, 622, 944, 1093
AflIII ACRYGT 2 cut(s) 90, 882
AgsI TTSAA 1 cut(s) 34
AjiI CACGTC 1 cut(s) 720
AjnI CCWGG 1 cut(s) 1026
AjuI GAANNNNNNNTTGG 2 cut(s) 804, 836
AluBI AGCT 8 cut(s) 219, 263, 423, 598, 757, 833, 965, 977
AluI AGCT 8 cut(s) 219, 263, 423, 598, 757, 833, 965, 977
Alw26I GTCTC 2 cut(s) 103, 843
AlwI GGATC 3 cut(s) 329, 400, 498
Aor13HI TCCGGA 3 cut(s) 310, 389, 440
AoxI GGCC 2 cut(s) 432, 1029
ApeKI GCWGC 2 cut(s) 598, 838
ApoI RAATTY 1 cut(s) 909
Asp700I GAANNNNTTC 1 cut(s) 159
AspLEI GCGC 3 cut(s) 182, 685, 716
AspS9I GGNCC 1 cut(s) 1030
AsuC2I CCSGG 2 cut(s) 687, 1047
AsuHPI GGTGA 1 cut(s) 637
AsuII TTCGAA 1 cut(s) 752
BanI GGYRCC 1 cut(s) 682
BbsI GAAGAC 2 cut(s) 678, 708
BbvI GCAGC 2 cut(s) 585, 850
BccI CCATC 1 cut(s) 947
BcgI CGANNNNNNTGC 2 cut(s) 580, 614
BciT130I CCWGG 1 cut(s) 1028
BclI TGATCA 1 cut(s) 654
BcnI CCSGG 2 cut(s) 687, 1047
BcoDI GTCTC 2 cut(s) 103, 843
BfaI CTAG 3 cut(s) 383, 921, 1077
BfoI RGCGCY 1 cut(s) 686
BfuAI ACCTGC 1 cut(s) 763
BglII AGATCT 1 cut(s) 549
BisI GCNGC 4 cut(s) 435, 599, 602, 839
BlsI GCNGC 4 cut(s) 436, 600, 603, 840
BmcAI AGTACT 1 cut(s) 710
Bme1390I CCNGG 3 cut(s) 687, 1028, 1047
BmgBI CACGTC 1 cut(s) 720
BmgT120I GGNCC 1 cut(s) 1030
BmiI GGNNCC 4 cut(s) 459, 684, 936, 1098
BmrFI CCNGG 3 cut(s) 687, 1028, 1047
BmrI ACTGGG 2 cut(s) 354, 509
BmsI GCATC 1 cut(s) 699
BmuI ACTGGG 2 cut(s) 354, 509
BpiI GAAGAC 2 cut(s) 678, 708
BplI GAGNNNNNCTC 2 cut(s) 422, 454
Bpu14I TTCGAA 1 cut(s) 752
BpuMI CCSGG 2 cut(s) 687, 1047
BsaAI YACGTR 3 cut(s) 769, 883, 931
BsaHI GRCGYC 1 cut(s) 683
BsaJI CCNNGG 2 cut(s) 429, 732
BsaWI WCCGGW 3 cut(s) 310, 389, 440
Bsc4I CCNNNNNNNGG 5 cut(s) 172, 410, 622, 944, 1093
Bse1I ACTGG 4 cut(s) 257, 323, 349, 504
BseAI TCCGGA 3 cut(s) 310, 389, 440
BseBI CCWGG 1 cut(s) 1028
BseDI CCNNGG 2 cut(s) 429, 732
BseGI GGATG 1 cut(s) 307
BseLI CCNNNNNNNGG 5 cut(s) 172, 410, 622, 944, 1093
BseMII CTCAG 1 cut(s) 651
BseNI ACTGG 4 cut(s) 257, 323, 349, 504
BseXI GCAGC 2 cut(s) 585, 850
BsgI GTGCAG 4 cut(s) 86, 503, 791, 857
Bsh1285I CGRYCG 2 cut(s) 118, 669
BshFI GGCC 2 cut(s) 434, 1031
BshNI GGYRCC 1 cut(s) 682
BsiEI CGRYCG 2 cut(s) 118, 669
BsiSI CCGG 5 cut(s) 311, 390, 441, 686, 1046
BslI CCNNNNNNNGG 5 cut(s) 172, 410, 622, 944, 1093
BsmAI GTCTC 2 cut(s) 103, 843
BsmBI CGTCTC 1 cut(s) 103
BsnI GGCC 2 cut(s) 434, 1031
Bsp119I TTCGAA 1 cut(s) 752
Bsp13I TCCGGA 3 cut(s) 310, 389, 440
Bsp143I GATC 8 cut(s) 43, 321, 361, 392, 490, 549, 654, 666
BspACI CCGC 7 cut(s) 21, 114, 435, 602, 623, 890, 971
BspANI GGCC 2 cut(s) 434, 1031
BspCNI CTCAG 1 cut(s) 650
BspEI TCCGGA 3 cut(s) 310, 389, 440
BspLI GGNNCC 4 cut(s) 459, 684, 936, 1098
BspMI ACCTGC 1 cut(s) 763
BspPI GGATC 3 cut(s) 329, 400, 498
BspT104I TTCGAA 1 cut(s) 752
BspT107I GGYRCC 1 cut(s) 682
BsrI ACTGG 4 cut(s) 257, 323, 349, 504
BssECI CCNNGG 2 cut(s) 429, 732
BssMI GATC 8 cut(s) 43, 321, 361, 392, 490, 549, 654, 666
BssNI GRCGYC 1 cut(s) 683
BssT1I CCWWGG 1 cut(s) 732
Bst2UI CCWGG 1 cut(s) 1028
Bst4CI ACNGT 3 cut(s) 207, 538, 748
BstACI GRCGYC 1 cut(s) 683
BstBAI YACGTR 3 cut(s) 769, 883, 931
BstBI TTCGAA 1 cut(s) 752
BstC8I GCNNGC 2 cut(s) 19, 596
BstDEI CTNAG 1 cut(s) 637
BstF5I GGATG 1 cut(s) 307
BstH2I RGCGCY 1 cut(s) 686
BstHHI GCGC 3 cut(s) 182, 685, 716
BstKTI GATC 8 cut(s) 46, 324, 364, 395, 493, 552, 657, 669
BstMAI GTCTC 2 cut(s) 103, 843
BstMBI GATC 8 cut(s) 43, 321, 361, 392, 490, 549, 654, 666
BstMCI CGRYCG 2 cut(s) 118, 669
BstMWI GCNNNNNNNGC 2 cut(s) 434, 1028
BstNI CCWGG 1 cut(s) 1028
BstNSI RCATGY 1 cut(s) 94
BstSCI CCNGG 3 cut(s) 685, 1026, 1045
BstV1I GCAGC 2 cut(s) 585, 850
BstV2I GAAGAC 2 cut(s) 678, 708
BstX2I RGATCY 3 cut(s) 392, 490, 549
BstXI CCANNNNNNTGG 2 cut(s) 640, 724
BstYI RGATCY 3 cut(s) 392, 490, 549
BsuRI GGCC 2 cut(s) 434, 1031
BtrI CACGTC 1 cut(s) 720
BtsCI GGATG 1 cut(s) 307
BtsIMutI CAGTG 5 cut(s) 203, 342, 645, 864, 987
BveI ACCTGC 1 cut(s) 763
Cac8I GCNNGC 2 cut(s) 19, 596
CfoI GCGC 3 cut(s) 182, 685, 716
Cfr13I GGNCC 1 cut(s) 1030
Csp6I GTAC 2 cut(s) 709, 880
CviAII CATG 6 cut(s) 41, 91, 151, 240, 905, 1002
CviQI GTAC 2 cut(s) 709, 880
DdeI CTNAG 1 cut(s) 637
DinI GGCGCC 1 cut(s) 684
DpnI GATC 8 cut(s) 45, 323, 363, 394, 492, 551, 656, 668
DpnII GATC 8 cut(s) 43, 321, 361, 392, 490, 549, 654, 666
Eco130I CCWWGG 1 cut(s) 732
Eco57I CTGAAG 2 cut(s) 110, 987
EcoO109I RGGNCCY 1 cut(s) 1030
EcoRII CCWGG 1 cut(s) 1026
EcoT14I CCWWGG 1 cut(s) 732
EgeI GGCGCC 1 cut(s) 684
EheI GGCGCC 1 cut(s) 684
ErhI CCWWGG 1 cut(s) 732
Esp3I CGTCTC 1 cut(s) 103
FaeI CATG 6 cut(s) 44, 94, 154, 243, 908, 1005
FatI CATG 6 cut(s) 40, 90, 150, 239, 904, 1001
FbaI TGATCA 1 cut(s) 654
FblI GTMKAC 1 cut(s) 87
Fnu4HI GCNGC 4 cut(s) 435, 599, 602, 839
FokI GGATG 1 cut(s) 294
Fsp4HI GCNGC 4 cut(s) 435, 599, 602, 839
FspBI CTAG 3 cut(s) 383, 921, 1077
GlaI GCGC 3 cut(s) 181, 684, 715
GluI GCNGC 4 cut(s) 435, 599, 602, 839
HaeII RGCGCY 1 cut(s) 686
HaeIII GGCC 2 cut(s) 434, 1031
HapII CCGG 5 cut(s) 311, 390, 441, 686, 1046
HhaI GCGC 3 cut(s) 182, 685, 716
Hin1I GRCGYC 1 cut(s) 683
Hin1II CATG 6 cut(s) 44, 94, 154, 243, 908, 1005
Hin6I GCGC 3 cut(s) 180, 683, 714
HinP1I GCGC 3 cut(s) 180, 683, 714
HinfI GANTC 3 cut(s) 103, 607, 728
HpaII CCGG 5 cut(s) 311, 390, 441, 686, 1046
HphI GGTGA 1 cut(s) 637
Hpy166II GTNNAC 1 cut(s) 88
Hpy188I TCNGA 1 cut(s) 547
Hpy188III TCNNGA 5 cut(s) 100, 107, 311, 390, 441
Hpy8I GTNNAC 1 cut(s) 88
Hpy99I CGWCG 2 cut(s) 592, 724
HpyAV CCTTC 2 cut(s) 104, 320
HpyCH4III ACNGT 3 cut(s) 207, 538, 748
HpyCH4IV ACGT 4 cut(s) 719, 768, 882, 930
HpyCH4V TGCA 5 cut(s) 67, 398, 520, 772, 838
HpyF10VI GCNNNNNNNGC 2 cut(s) 434, 1028
HpyF3I CTNAG 1 cut(s) 637
HpySE526I ACGT 4 cut(s) 719, 768, 882, 930
Hsp92I GRCGYC 1 cut(s) 683
Hsp92II CATG 6 cut(s) 44, 94, 154, 243, 908, 1005
HspAI GCGC 3 cut(s) 180, 683, 714
KasI GGCGCC 1 cut(s) 682
Kpn2I TCCGGA 3 cut(s) 310, 389, 440
Ksp22I TGATCA 1 cut(s) 654
Kzo9I GATC 8 cut(s) 43, 321, 361, 392, 490, 549, 654, 666
LmnI GCTCC 2 cut(s) 457, 830
Lsp1109I GCAGC 2 cut(s) 585, 850
LweI GCATC 1 cut(s) 699
MaeI CTAG 3 cut(s) 383, 921, 1077
MaeII ACGT 4 cut(s) 719, 768, 882, 930
MaeIII GTNAC 3 cut(s) 466, 866, 1064
MalI GATC 8 cut(s) 45, 323, 363, 394, 492, 551, 656, 668
MboI GATC 8 cut(s) 43, 321, 361, 392, 490, 549, 654, 666
MboII GAAGA 5 cut(s) 225, 517, 520, 683, 713
MflI RGATCY 3 cut(s) 392, 490, 549
MluCI AATT 4 cut(s) 11, 25, 843, 909
Mly113I GGCGCC 1 cut(s) 683
MmeI TCCRAC 2 cut(s) 428, 705
MroI TCCGGA 3 cut(s) 310, 389, 440
MroXI GAANNNNTTC 1 cut(s) 159
MspI CCGG 5 cut(s) 311, 390, 441, 686, 1046
MspR9I CCNGG 3 cut(s) 687, 1028, 1047
MvaI CCWGG 1 cut(s) 1028
MwoI GCNNNNNNNGC 2 cut(s) 434, 1028
NarI GGCGCC 1 cut(s) 683
NciI CCSGG 2 cut(s) 687, 1047
NdeII GATC 8 cut(s) 43, 321, 361, 392, 490, 549, 654, 666
NlaIII CATG 6 cut(s) 44, 94, 154, 243, 908, 1005
NlaIV GGNNCC 4 cut(s) 459, 684, 936, 1098
NmeAIII GCCGAG 1 cut(s) 454
NmuCI GTSAC 3 cut(s) 466, 866, 1064
NspI RCATGY 1 cut(s) 94
NspV TTCGAA 1 cut(s) 752
PaqCI CACCTGC 1 cut(s) 763
PciI ACATGT 1 cut(s) 90
PcsI WCGNNNNNNNCGW 3 cut(s) 675, 744, 765
PdmI GAANNNNTTC 1 cut(s) 159
PfeI GAWTC 3 cut(s) 103, 607, 728
PflMI CCANNNNNTGG 1 cut(s) 410
PkrI GCNGC 4 cut(s) 436, 600, 603, 840
Ple19I CGATCG 1 cut(s) 669
PluTI GGCGCC 1 cut(s) 686
Ppu21I YACGTR 3 cut(s) 769, 883, 931
PscI ACATGT 1 cut(s) 90
Psp6I CCWGG 1 cut(s) 1026
PspGI CCWGG 1 cut(s) 1026
PspN4I GGNNCC 4 cut(s) 459, 684, 936, 1098
PspPI GGNCC 1 cut(s) 1030
PsuI RGATCY 3 cut(s) 392, 490, 549
PvuI CGATCG 1 cut(s) 669
RsaI GTAC 2 cut(s) 710, 881
RsaNI GTAC 2 cut(s) 709, 880
SatI GCNGC 4 cut(s) 435, 599, 602, 839
Sau3AI GATC 8 cut(s) 43, 321, 361, 392, 490, 549, 654, 666
Sau96I GGNCC 1 cut(s) 1030
ScaI AGTACT 1 cut(s) 710
ScrFI CCNGG 3 cut(s) 687, 1028, 1047
SfaNI GCATC 1 cut(s) 699
SfoI GGCGCC 1 cut(s) 684
SfuI TTCGAA 1 cut(s) 752
Sse9I AATT 4 cut(s) 11, 25, 843, 909
SsiI CCGC 7 cut(s) 21, 114, 435, 602, 623, 890, 971
SspDI GGCGCC 1 cut(s) 682
SspMI CTAG 3 cut(s) 383, 921, 1077
StyD4I CCNGG 3 cut(s) 685, 1026, 1045
StyI CCWWGG 1 cut(s) 732
TaaI ACNGT 3 cut(s) 207, 538, 748
TaiI ACGT 4 cut(s) 722, 771, 885, 933
TaqI TCGA 7 cut(s) 101, 324, 587, 669, 738, 752, 792
TaqII GACCGA 1 cut(s) 163
TasI AATT 4 cut(s) 11, 25, 843, 909
TatI WGTACW 1 cut(s) 708
TauI GCSGC 2 cut(s) 437, 604
TfiI GAWTC 3 cut(s) 103, 607, 728
TscAI CASTG 5 cut(s) 210, 349, 645, 864, 994
TseFI GTSAC 3 cut(s) 466, 866, 1064
TseI GCWGC 2 cut(s) 598, 838
Tsp45I GTSAC 3 cut(s) 466, 866, 1064
TspDTI ATGAA 1 cut(s) 921
TspRI CASTG 5 cut(s) 210, 349, 645, 864, 994
Van91I CCANNNNNTGG 1 cut(s) 410
XapI RAATTY 1 cut(s) 909
XceI RCATGY 1 cut(s) 94
XmiI GTMKAC 1 cut(s) 87
XmnI GAANNNNTTC 1 cut(s) 159
XspI CTAG 3 cut(s) 383, 921, 1077
ZrmI AGTACT 1 cut(s) 710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.