pycom15g09070

Dehydration-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0000559
Physical Location & Seq
Forward (+)
5852080 .. 5854072
1993 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g09070.1

Sequence Viewer

Length: 1221 bp
ATGGGGTTCTTTCTCCCTCACATCCTTGCTTTTCTAACTCTCACACTGGTGGCATGCCATGCTGCTCTACCACCTCAACTTTACTGGAACTCTGTCTTGCCAAACTCAAAAATGCCAAAAGCTATCAGTGAACTTCTCCAGCCTGCAGATTTCACAGAAGATAAGAGCACCTCTGTTGTAGTAGGAAAGGGTGGTGTCAACGTTGATGCTGGAAAAGGAAAGCCCGGAGGCACCCATGTCGATGTTGGGAAGGGTACTGGAGTGCATGTGGACGCTGGAAAGGGAAAGCCTGGAGGCACCAATGTAAACGTCGGGAAGGGTGGAGTGCACGTGGAAGCCGGAAAAGGAAAGCCAGGCGGTGGCACTAACGTGACCGTAGGAGGCAAAGGCGGTGTTGGGGTGAACGCCGGGAAGGGAACCAACGTTGGTGTTGGCAAAGGAGGAGTGTCCGTAAACACAGGGCACAAGGGAAAGCCCGTGTATGTTGGAGTAACACCAGGAAAAAGCCCTTTTTCATACATGTATGCAGCCACGGAAACCCAACTCCATCAAGACCCAAACGTCGCTATTTTCTTCTTGGAGAAAGACATGCGTCCTGGAAAAACAATGAAATTGCACTTCACCACGAATTCAAACACGCAAACCTTCGTGCCACGCGAAACTGCGGAATCCATCCCATTTTCGTCGAACAAGCTGCCAGAAATCTTCAACCAATTTTCAGTGAAATCGGGTTCTGTGGAAGCGGATATAATCAAGGGTACGATTCAAGAGTGCGAGAATCCAGCCATTAGAGGAGAGGAGAAATATTGTGCTACCTCTTTGGAGTCCATGATTGACTTCAGCACTTCCAAGCTTGGAGGAGGAAATGTTCGAGCAATTTCGACAGAAGCCGGGAAAGGAGCCACTTTGCAGAAGTACACAATAGCTTCTGGAGTGAAGAAGTTGGCGGCGGATAAGTCCGTCGTGTGTCACAAGCAGAACTATCCCTATGCTGTTTTTTACTGCCATGCAACAAAAACAACCAGAGCTTATGTGGTGCCCCTGAAAGGTGCTGATGGGGTGAATGTTAAAGCAGTAGCAGTCTGCCACACAGACACATCAGATTGGAACCCTAAACATTTGTCCTTCCAAGTCCTCAAAATCAAGCCGGGAACTGTTCCGGTCTGCCATTTCCTTCCCAGTGATCATGTTGTCTGGGTTCCAAACCAGAAATCTACATGA

Protein Analysis

407

Amino Acids

42.63

Weight (kDa)

9.36

Isoelectric Point (pI)

26.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BURP PF03181 190 - 401 6e-90 BURP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000559)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25610
fragaria_vesca FvH4_2g36250 FvH4_2g36250 FvH4_2g36250 FvH4_7g14680
malus_domestica MD04G1018200.v1.1 MD08G1119600.v1.1 MD08G1119700.v1.1 MD08G1119800.v1.1 MD08G1199500.v1.1 MD08G1203300.v1.1 MD15G1098800.v1.1 MD15G1219500.v1.1
prunus_persica Prupe.1G453500_v2.0.a1 Prupe.1G453600_v2.0.a1 Prupe.1G453700_v2.0.a1 Prupe.1G465600_v2.0.a1 Prupe.1G475100_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475400_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475800_v2.0.a1 Prupe.1G475900_v2.0.a1 Prupe.1G476200_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476700_v2.0.a1 Prupe.1G477000_v2.0.a1 Prupe.1G477200_v2.0.a1 Prupe.1G477400_v2.0.a1 Prupe.1G477800_v2.0.a1 Prupe.4G169000_v2.0.a1 Prupe.4G257600_v2.0.a1
pyrus_communis pycom08g16760 pycom14g01650 pycom15g09040 pycom15g09070
rosa_chinensis RchiOBHm_Chr1g0356161 RchiOBHm_Chr1g0356461 RchiOBHm_Chr5g0051031
rosa_laevigata RLG00000010869 RLG00000028095 RLG00000028100 RLG00000034755
rosa_multiflora Rmu_co8314191.1_g000001 Rmu_co8337567.1_g000001 Rmu_sc0000281.1_g000019 Rmu_sc0000446.1_g000034 Rmu_sc0000782.1_g000019 Rmu_sc0001809.1_g000027 Rmu_sc0013768.1_g000023
rosa_roxburghii Rroxscaffold_1G00029620 Rroxscaffold_4G00299510 Rroxscaffold_4G00299720 Rroxscaffold_7G00162480
rosa_rugosa Rorug01G0249900 Rorug01G0250000 Rorug05G0572100 Rorug06G0342600
rosa_samantha Rh1AG262800 Rh1AG263300 Rh1AG263600 Rh1BG231500 Rh1CG246400 Rh1CG246900 Rh1DG259200 Rh5AG337800 Rh5BG347500 Rh5CG374800 Rh5DG360600 Rh6BG447100 Rh6CG468100 Rh6DG454900
rosa_wichuraiana Rw1G023250 Rw1G023300 Rw5G031920 Rw6G039620 Rw7G036720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 560
AccB1I GGYRCC 3 cut(s) 230, 296, 1036
AccB7I CCANNNNNTGG 1 cut(s) 359
AccII CGCG 1 cut(s) 657
AciI CCGC 6 cut(s) 357, 390, 665, 743, 947, 950
AclI AACGTT 2 cut(s) 201, 423
AcsI RAATTY 1 cut(s) 628
AcuI CTGAAG 1 cut(s) 823
AcvI CACGTG 1 cut(s) 331
AfaI GTAC 3 cut(s) 256, 760, 917
AfiI CCNNNNNNNGG 2 cut(s) 359, 1046
AflIII ACRYGT 1 cut(s) 519
AgsI TTSAA 3 cut(s) 633, 709, 767
AjnI CCWGG 4 cut(s) 289, 352, 496, 595
AleI CACNNNNGTG 2 cut(s) 47, 368
AloI GAACNNNNNNTCC 2 cut(s) 852, 884
AluBI AGCT 5 cut(s) 122, 694, 853, 926, 1028
AluI AGCT 5 cut(s) 122, 694, 853, 926, 1028
Alw21I GWGCWC 2 cut(s) 170, 330
Alw44I GTGCAC 1 cut(s) 326
ApaLI GTGCAC 1 cut(s) 326
ApeKI GCWGC 3 cut(s) 62, 527, 694
ApoI RAATTY 1 cut(s) 628
AsuC2I CCSGG 4 cut(s) 225, 409, 892, 1149
AsuHPI GGTGA 3 cut(s) 412, 613, 1072
BaeGI GKGCMC 3 cut(s) 330, 465, 1041
BaeI ACNNNNGTAYC 2 cut(s) 246, 279
BanI GGYRCC 3 cut(s) 230, 296, 1036
BbrPI CACGTG 1 cut(s) 331
Bbv12I GWGCWC 2 cut(s) 170, 330
BbvI GCAGC 3 cut(s) 49, 539, 681
BccI CCATC 3 cut(s) 555, 680, 1049
BcgI CGANNNNNNTGC 4 cut(s) 220, 254, 676, 710
BciT130I CCWGG 4 cut(s) 291, 354, 498, 597
BclI TGATCA 1 cut(s) 1183
BcnI CCSGG 4 cut(s) 225, 409, 892, 1149
BfmI CTRYAG 1 cut(s) 144
BisI GCNGC 4 cut(s) 63, 528, 695, 948
BlsI GCNGC 4 cut(s) 64, 529, 696, 949
Bme1390I CCNGG 8 cut(s) 225, 291, 354, 409, 498, 597, 892, 1149
BmiI GGNNCC 7 cut(s) 232, 298, 418, 901, 1038, 1109, 1200
BmrFI CCNGG 8 cut(s) 225, 291, 354, 409, 498, 597, 892, 1149
BmrI ACTGGG 1 cut(s) 1173
BmsI GCATC 1 cut(s) 196
BmuI ACTGGG 1 cut(s) 1173
BoxI GACNNNNGTC 1 cut(s) 591
BpmI CTGGAG 4 cut(s) 122, 279, 312, 951
BpuMI CCSGG 4 cut(s) 225, 409, 892, 1149
BsaAI YACGTR 1 cut(s) 331
BsaJI CCNNGG 1 cut(s) 531
BsaWI WCCGGW 1 cut(s) 1159
BsaXI ACNNNNNCTCC 8 cut(s) 252, 282, 315, 345, 435, 465, 852, 882
Bsc4I CCNNNNNNNGG 2 cut(s) 359, 1046
Bse1I ACTGG 4 cut(s) 51, 89, 262, 1179
BseBI CCWGG 4 cut(s) 291, 354, 498, 597
BseDI CCNNGG 1 cut(s) 531
BseGI GGATG 2 cut(s) 21, 672
BseLI CCNNNNNNNGG 2 cut(s) 359, 1046
BseNI ACTGG 4 cut(s) 51, 89, 262, 1179
BseRI GAGGAG 4 cut(s) 456, 807, 812, 873
BseSI GKGCMC 3 cut(s) 330, 465, 1041
BseXI GCAGC 3 cut(s) 49, 539, 681
Bsh1236I CGCG 1 cut(s) 657
BshNI GGYRCC 3 cut(s) 230, 296, 1036
BsiHKAI GWGCWC 2 cut(s) 170, 330
BsiSI CCGG 6 cut(s) 225, 339, 408, 891, 1148, 1160
BslI CCNNNNNNNGG 2 cut(s) 359, 1046
Bsp1286I GDGCHC 4 cut(s) 170, 330, 465, 1041
Bsp143I GATC 1 cut(s) 1183
BspACI CCGC 6 cut(s) 357, 390, 665, 743, 947, 950
BspFNI CGCG 1 cut(s) 657
BspLI GGNNCC 7 cut(s) 232, 298, 418, 901, 1038, 1109, 1200
BspMAI CTGCAG 1 cut(s) 148
BspT107I GGYRCC 3 cut(s) 230, 296, 1036
BsrI ACTGG 4 cut(s) 51, 89, 262, 1179
BssECI CCNNGG 1 cut(s) 531
BssMI GATC 1 cut(s) 1183
Bst2UI CCWGG 4 cut(s) 291, 354, 498, 597
Bst4CI ACNGT 2 cut(s) 376, 1156
BstAPI GCANNNNNTGC 1 cut(s) 59
BstBAI YACGTR 1 cut(s) 331
BstC8I GCNNGC 2 cut(s) 55, 144
BstDSI CCRYGG 1 cut(s) 531
BstF5I GGATG 2 cut(s) 21, 672
BstFNI CGCG 1 cut(s) 657
BstKTI GATC 1 cut(s) 1186
BstMBI GATC 1 cut(s) 1183
BstMWI GCNNNNNNNGC 1 cut(s) 59
BstNI CCWGG 4 cut(s) 291, 354, 498, 597
BstNSI RCATGY 4 cut(s) 57, 269, 523, 592
BstPAI GACNNNNGTC 1 cut(s) 591
BstSCI CCNGG 8 cut(s) 223, 289, 352, 407, 496, 595, 890, 1147
BstSFI CTRYAG 1 cut(s) 144
BstSLI GKGCMC 3 cut(s) 330, 465, 1041
BstUI CGCG 1 cut(s) 657
BstV1I GCAGC 3 cut(s) 49, 539, 681
BtgI CCRYGG 1 cut(s) 531
BtsCI GGATG 2 cut(s) 21, 672
BtsIMutI CAGTG 4 cut(s) 44, 133, 726, 1186
Cac8I GCNNGC 2 cut(s) 55, 144
CseI GACGC 2 cut(s) 281, 581
Csp6I GTAC 3 cut(s) 255, 759, 916
CviQI GTAC 3 cut(s) 255, 759, 916
DpnI GATC 1 cut(s) 1185
DpnII GATC 1 cut(s) 1183
DrdI GACNNNNNNGTC 1 cut(s) 560
DseDI GACNNNNNNGTC 1 cut(s) 560
EciI GGCGGA 1 cut(s) 965
Eco57I CTGAAG 1 cut(s) 823
Eco72I CACGTG 1 cut(s) 331
EcoRI GAATTC 1 cut(s) 628
EcoRII CCWGG 4 cut(s) 289, 352, 496, 595
FbaI TGATCA 1 cut(s) 1183
Fnu4HI GCNGC 4 cut(s) 63, 528, 695, 948
FokI GGATG 2 cut(s) 8, 659
Fsp4HI GCNGC 4 cut(s) 63, 528, 695, 948
GluI GCNGC 4 cut(s) 63, 528, 695, 948
GsuI CTGGAG 4 cut(s) 122, 279, 312, 951
HapII CCGG 6 cut(s) 225, 339, 408, 891, 1148, 1160
HgaI GACGC 2 cut(s) 281, 581
HincII GTYRAC 1 cut(s) 199
HindII GTYRAC 1 cut(s) 199
HindIII AAGCTT 1 cut(s) 851
HinfI GANTC 4 cut(s) 668, 763, 778, 824
HpaII CCGG 6 cut(s) 225, 339, 408, 891, 1148, 1160
HphI GGTGA 3 cut(s) 412, 613, 1072
Hpy166II GTNNAC 8 cut(s) 131, 199, 271, 307, 328, 403, 454, 918
Hpy188I TCNGA 1 cut(s) 1102
Hpy188III TCNNGA 4 cut(s) 313, 551, 767, 930
Hpy8I GTNNAC 8 cut(s) 131, 199, 271, 307, 328, 403, 454, 918
Hpy99I CGWCG 4 cut(s) 314, 566, 688, 965
HpyAV CCTTC 6 cut(s) 244, 310, 406, 655, 1135, 1184
HpyCH4III ACNGT 2 cut(s) 376, 1156
HpyCH4IV ACGT 6 cut(s) 201, 309, 330, 369, 423, 561
HpyCH4V TGCA 7 cut(s) 146, 265, 328, 527, 616, 910, 1010
HpyF10VI GCNNNNNNNGC 1 cut(s) 59
HpySE526I ACGT 6 cut(s) 201, 309, 330, 369, 423, 561
Ksp22I TGATCA 1 cut(s) 1183
Kzo9I GATC 1 cut(s) 1183
LmnI GCTCC 1 cut(s) 899
Lsp1109I GCAGC 3 cut(s) 49, 539, 681
LweI GCATC 1 cut(s) 196
MaeII ACGT 6 cut(s) 201, 309, 330, 369, 423, 561
MaeIII GTNAC 3 cut(s) 370, 490, 968
MalI GATC 1 cut(s) 1185
MboI GATC 1 cut(s) 1183
MboII GAAGA 4 cut(s) 170, 565, 697, 949
MhlI GDGCHC 4 cut(s) 170, 330, 465, 1041
MluCI AATT 4 cut(s) 611, 628, 713, 876
MlyI GAGTC 1 cut(s) 833
MmeI TCCRAC 1 cut(s) 466
MseI TTAA 1 cut(s) 1068
MslI CAYNNNNRTG 3 cut(s) 47, 240, 368
MspI CCGG 6 cut(s) 225, 339, 408, 891, 1148, 1160
MspR9I CCNGG 8 cut(s) 225, 291, 354, 409, 498, 597, 892, 1149
MvaI CCWGG 4 cut(s) 291, 354, 498, 597
MvnI CGCG 1 cut(s) 657
MwoI GCNNNNNNNGC 1 cut(s) 59
NciI CCSGG 4 cut(s) 225, 409, 892, 1149
NdeII GATC 1 cut(s) 1183
NlaIV GGNNCC 7 cut(s) 232, 298, 418, 901, 1038, 1109, 1200
NmuCI GTSAC 2 cut(s) 370, 968
NspI RCATGY 4 cut(s) 57, 269, 523, 592
OliI CACNNNNGTG 2 cut(s) 47, 368
PaeI GCATGC 1 cut(s) 57
PciI ACATGT 1 cut(s) 519
PcsI WCGNNNNNNNCGW 1 cut(s) 654
PfeI GAWTC 3 cut(s) 668, 763, 778
PflMI CCANNNNNTGG 1 cut(s) 359
PfoI TCCNGGA 1 cut(s) 595
PkrI GCNGC 4 cut(s) 64, 529, 696, 949
PleI GAGTC 1 cut(s) 832
PmaCI CACGTG 1 cut(s) 331
PmlI CACGTG 1 cut(s) 331
PpsI GAGTC 1 cut(s) 832
Ppu21I YACGTR 1 cut(s) 331
PscI ACATGT 1 cut(s) 519
PshAI GACNNNNGTC 1 cut(s) 591
Psp1406I AACGTT 2 cut(s) 201, 423
Psp6I CCWGG 4 cut(s) 289, 352, 496, 595
PspCI CACGTG 1 cut(s) 331
PspGI CCWGG 4 cut(s) 289, 352, 496, 595
PspN4I GGNNCC 7 cut(s) 232, 298, 418, 901, 1038, 1109, 1200
PstI CTGCAG 1 cut(s) 148
RsaI GTAC 3 cut(s) 256, 760, 917
RsaNI GTAC 3 cut(s) 255, 759, 916
RseI CAYNNNNRTG 3 cut(s) 47, 240, 368
SaqAI TTAA 1 cut(s) 1068
SatI GCNGC 4 cut(s) 63, 528, 695, 948
Sau3AI GATC 1 cut(s) 1183
SchI GAGTC 1 cut(s) 833
ScrFI CCNGG 8 cut(s) 225, 291, 354, 409, 498, 597, 892, 1149
SduI GDGCHC 4 cut(s) 170, 330, 465, 1041
SfaNI GCATC 1 cut(s) 196
SfcI CTRYAG 1 cut(s) 144
SmiMI CAYNNNNRTG 3 cut(s) 47, 240, 368
SphI GCATGC 1 cut(s) 57
Sse9I AATT 4 cut(s) 611, 628, 713, 876
SsiI CCGC 6 cut(s) 357, 390, 665, 743, 947, 950
SspI AATATT 1 cut(s) 806
StyD4I CCNGG 8 cut(s) 223, 289, 352, 407, 496, 595, 890, 1147
TaaI ACNGT 2 cut(s) 376, 1156
TaiI ACGT 6 cut(s) 204, 312, 333, 372, 426, 564
TaqI TCGA 4 cut(s) 240, 686, 871, 881
TasI AATT 4 cut(s) 611, 628, 713, 876
TatI WGTACW 1 cut(s) 915
TauI GCSGC 1 cut(s) 950
TfiI GAWTC 3 cut(s) 668, 763, 778
Tru1I TTAA 1 cut(s) 1068
Tru9I TTAA 1 cut(s) 1068
TscAI CASTG 4 cut(s) 51, 133, 726, 1186
TseFI GTSAC 2 cut(s) 370, 968
TseI GCWGC 3 cut(s) 62, 527, 694
Tsp45I GTSAC 2 cut(s) 370, 968
TspDTI ATGAA 2 cut(s) 504, 623
TspGWI ACGGA 3 cut(s) 439, 548, 949
TspRI CASTG 4 cut(s) 51, 133, 726, 1186
Van91I CCANNNNNTGG 1 cut(s) 359
VneI GTGCAC 1 cut(s) 326
XapI RAATTY 1 cut(s) 628
XceI RCATGY 4 cut(s) 57, 269, 523, 592
XcmI CCANNNNNNNNNTGG 2 cut(s) 242, 1030
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.