Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0000559

Physical Location & Seq

Genomic Coordinates Forward (+)

10976335 .. 10978077

Gene Structure 1743 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1119600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGCCAAGAGCTATCAGTGAACTTCTCCCGCCTGCAGATTTCACAGAAGATAAAAGCACCTCTGTTGTAGTAGGAAAGGGTGGTGTCAATGTTGATGCAGGCAAAGGAAAGCCCGGAGGCACCCATGTCGATATTGGGAAGGGTACTGGAGTGCATGTGGACGCTGGAAAGGGAAAGCCTGGAGGCACCAATGTAAACGTCGGGAAGGGCGGTGTGCACGTGGAAGCTGGAAAAGGAAAACCAAGCGGCGGCACTAACGTAAACGTAGGAGGCAAAGGCGGTGTTGGGTTGAACGCTGGCAAGCCCGGTAAGAGAACCAATGTTGGTGCTGGCAAAGGAGGAGTGTCAGGTCACAAGGGCAAGCTCGTGTATGTTGGAGTAAAACCAGGACCAAACCCTTTTGACTACAGGTATGCAGCCACCGAAACCCAACTCCATCAAGACCCAAACGTCGCTATTTTTTTCTTGGAGAAAGATATGCAACGTGGAACAACAATGAACTTGCACTTCACTACAAATTCAAACACAGCAACTTTCGTGTCACGCGAAACCGCCGAATCCATCCCATTTTCGTCCAACAAGCTGCCAGAAATCTTAAACCAATTTTCAGTGAAACCGGGGTCCGTAGAATCAGATATAATCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0012505 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BURP

Protein Analysis

216

Amino Acids

22.0

Weight (kDa)

9.61

Isoelectric Point (pI)

10.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BURP	PF03181	153 - 215	7.1e-14	BURP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25610
fragaria_vesca	FvH4_2g36250 FvH4_2g36250 FvH4_2g36250 FvH4_7g14680
malus_domestica	MD04G1018200.v1.1 MD08G1119600.v1.1 MD08G1119700.v1.1 MD08G1119800.v1.1 MD08G1199500.v1.1 MD08G1203300.v1.1 MD15G1098800.v1.1 MD15G1219500.v1.1
prunus_persica	Prupe.1G453500_v2.0.a1 Prupe.1G453600_v2.0.a1 Prupe.1G453700_v2.0.a1 Prupe.1G465600_v2.0.a1 Prupe.1G475100_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475400_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475800_v2.0.a1 Prupe.1G475900_v2.0.a1 Prupe.1G476200_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476700_v2.0.a1 Prupe.1G477000_v2.0.a1 Prupe.1G477200_v2.0.a1 Prupe.1G477400_v2.0.a1 Prupe.1G477800_v2.0.a1 Prupe.4G169000_v2.0.a1 Prupe.4G257600_v2.0.a1
pyrus_communis	pycom08g16760 pycom14g01650 pycom15g09040 pycom15g09070
rosa_chinensis	RchiOBHm_Chr1g0356161 RchiOBHm_Chr1g0356461 RchiOBHm_Chr5g0051031
rosa_laevigata	RLG00000010869 RLG00000028095 RLG00000028100 RLG00000034755
rosa_multiflora	Rmu_co8314191.1_g000001 Rmu_co8337567.1_g000001 Rmu_sc0000281.1_g000019 Rmu_sc0000446.1_g000034 Rmu_sc0000782.1_g000019 Rmu_sc0001809.1_g000027 Rmu_sc0013768.1_g000023
rosa_roxburghii	Rroxscaffold_1G00029620 Rroxscaffold_4G00299510 Rroxscaffold_4G00299720 Rroxscaffold_7G00162480
rosa_rugosa	Rorug01G0249900 Rorug01G0250000 Rorug05G0572100 Rorug06G0342600
rosa_samantha	Rh1AG262800 Rh1AG263300 Rh1AG263600 Rh1BG231500 Rh1CG246400 Rh1CG246900 Rh1DG259200 Rh5AG337800 Rh5BG347500 Rh5CG374800 Rh5DG360600 Rh6BG447100 Rh6CG468100 Rh6DG454900
rosa_wichuraiana	Rw1G023250 Rw1G023300 Rw5G031920 Rw6G039620 Rw7G036720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	449
AccB1I	GGYRCC	2 cut(s)	119, 185
AccII	CGCG	1 cut(s)	546
AciI	CCGC	6 cut(s)	29, 210, 246, 249, 279, 552
AcsI	RAATTY	1 cut(s)	517
AcvI	CACGTG	1 cut(s)	220
AfaI	GTAC	1 cut(s)	145
AfiI	CCNNNNNNNGG	1 cut(s)	248
AgsI	TTSAA	2 cut(s)	292, 522
AjnI	CCWGG	2 cut(s)	178, 385
AluBI	AGCT	4 cut(s)	11, 227, 364, 583
AluI	AGCT	4 cut(s)	11, 227, 364, 583
Alw21I	GWGCWC	1 cut(s)	219
Alw44I	GTGCAC	1 cut(s)	215
ApaLI	GTGCAC	1 cut(s)	215
ApeKI	GCWGC	2 cut(s)	416, 583
ApoI	RAATTY	1 cut(s)	517
AspS9I	GGNCC	2 cut(s)	389, 621
AsuC2I	CCSGG	3 cut(s)	114, 306, 618
AvaII	GGWCC	2 cut(s)	389, 621
BaeGI	GKGCMC	1 cut(s)	219
BaeI	ACNNNNGTAYC	2 cut(s)	135, 168
BanI	GGYRCC	2 cut(s)	119, 185
BauI	CACGAG	1 cut(s)	365
BbrPI	CACGTG	1 cut(s)	220
Bbv12I	GWGCWC	1 cut(s)	219
BbvI	GCAGC	2 cut(s)	428, 570
BccI	CCATC	2 cut(s)	444, 569
BcgI	CGANNNNNNTGC	2 cut(s)	109, 143
BciT130I	CCWGG	2 cut(s)	180, 387
BcnI	CCSGG	3 cut(s)	114, 306, 618
BfmI	CTRYAG	2 cut(s)	33, 406
BisI	GCNGC	4 cut(s)	247, 250, 417, 584
BlsI	GCNGC	4 cut(s)	248, 251, 418, 585
Bme1390I	CCNGG	5 cut(s)	114, 180, 306, 387, 618
Bme18I	GGWCC	2 cut(s)	389, 621
BmgT120I	GGNCC	2 cut(s)	389, 621
BmiI	GGNNCC	3 cut(s)	121, 187, 622
BmrFI	CCNGG	5 cut(s)	114, 180, 306, 387, 618
BmsI	GCATC	1 cut(s)	85
BpmI	CTGGAG	2 cut(s)	168, 201
BpuMI	CCSGG	3 cut(s)	114, 306, 618
BsaAI	YACGTR	1 cut(s)	220
BsaJI	CCNNGG	1 cut(s)	617
BsaXI	ACNNNNNCTCC	2 cut(s)	141, 171
Bsc4I	CCNNNNNNNGG	1 cut(s)	248
Bse1I	ACTGG	1 cut(s)	151
BseBI	CCWGG	2 cut(s)	180, 387
BseDI	CCNNGG	1 cut(s)	617
BseGI	GGATG	1 cut(s)	561
BseLI	CCNNNNNNNGG	1 cut(s)	248
BseNI	ACTGG	1 cut(s)	151
BseRI	GAGGAG	1 cut(s)	354
BseSI	GKGCMC	1 cut(s)	219
BseXI	GCAGC	2 cut(s)	428, 570
Bsh1236I	CGCG	1 cut(s)	546
BshNI	GGYRCC	2 cut(s)	119, 185
BsiHKAI	GWGCWC	1 cut(s)	219
BsiSI	CCGG	3 cut(s)	114, 306, 617
BslI	CCNNNNNNNGG	1 cut(s)	248
Bsp1286I	GDGCHC	1 cut(s)	219
BspACI	CCGC	6 cut(s)	29, 210, 246, 249, 279, 552
BspFNI	CGCG	1 cut(s)	546
BspLI	GGNNCC	3 cut(s)	121, 187, 622
BspMAI	CTGCAG	1 cut(s)	37
BspT107I	GGYRCC	2 cut(s)	119, 185
BsrI	ACTGG	1 cut(s)	151
BssECI	CCNNGG	1 cut(s)	617
BssSI	CACGAG	1 cut(s)	365
Bst2BI	CACGAG	1 cut(s)	365
Bst2UI	CCWGG	2 cut(s)	180, 387
BstBAI	YACGTR	1 cut(s)	220
BstC8I	GCNNGC	6 cut(s)	33, 100, 298, 302, 331, 362
BstF5I	GGATG	1 cut(s)	561
BstFNI	CGCG	1 cut(s)	546
BstNI	CCWGG	2 cut(s)	180, 387
BstNSI	RCATGY	1 cut(s)	158
BstSCI	CCNGG	5 cut(s)	112, 178, 304, 385, 616
BstSFI	CTRYAG	2 cut(s)	33, 406
BstSLI	GKGCMC	1 cut(s)	219
BstUI	CGCG	1 cut(s)	546
BstV1I	GCAGC	2 cut(s)	428, 570
BtsCI	GGATG	1 cut(s)	561
BtsIMutI	CAGTG	2 cut(s)	22, 615
Cac8I	GCNNGC	6 cut(s)	33, 100, 298, 302, 331, 362
Cfr13I	GGNCC	2 cut(s)	389, 621
CseI	GACGC	1 cut(s)	170
Csp6I	GTAC	1 cut(s)	144
CviAII	CATG	2 cut(s)	125, 155
CviJI	RGCY	8 cut(s)	11, 112, 178, 227, 304, 364, 419, 583
CviKI_1	RGCY	8 cut(s)	11, 112, 178, 227, 304, 364, 419, 583
CviQI	GTAC	1 cut(s)	144
DrdI	GACNNNNNNGTC	1 cut(s)	449
DseDI	GACNNNNNNGTC	1 cut(s)	449
Eco47I	GGWCC	2 cut(s)	389, 621
Eco72I	CACGTG	1 cut(s)	220
EcoRII	CCWGG	2 cut(s)	178, 385
FaeI	CATG	2 cut(s)	128, 158
FaiI	YATR	6 cut(s)	126, 156, 372, 414, 479, 638
FatI	CATG	2 cut(s)	124, 154
FauI	CCCGC	1 cut(s)	36
Fnu4HI	GCNGC	4 cut(s)	247, 250, 417, 584
FokI	GGATG	1 cut(s)	548
Fsp4HI	GCNGC	4 cut(s)	247, 250, 417, 584
GluI	GCNGC	4 cut(s)	247, 250, 417, 584
GsuI	CTGGAG	2 cut(s)	168, 201
HapII	CCGG	3 cut(s)	114, 306, 617
HgaI	GACGC	1 cut(s)	170
Hin1II	CATG	2 cut(s)	128, 158
HinfI	GANTC	2 cut(s)	557, 629
HpaII	CCGG	3 cut(s)	114, 306, 617
Hpy166II	GTNNAC	5 cut(s)	20, 160, 196, 217, 262
Hpy188I	TCNGA	1 cut(s)	634
Hpy188III	TCNNGA	2 cut(s)	202, 440
Hpy8I	GTNNAC	5 cut(s)	20, 160, 196, 217, 262
Hpy99I	CGWCG	2 cut(s)	203, 455
HpyAV	CCTTC	2 cut(s)	133, 199
HpyCH4IV	ACGT	6 cut(s)	198, 219, 258, 264, 450, 484
HpyCH4V	TGCA	7 cut(s)	35, 98, 154, 217, 416, 481, 505
HpySE526I	ACGT	6 cut(s)	198, 219, 258, 264, 450, 484
Hsp92II	CATG	2 cut(s)	128, 158
Lsp1109I	GCAGC	2 cut(s)	428, 570
LweI	GCATC	1 cut(s)	85
MaeII	ACGT	6 cut(s)	198, 219, 258, 264, 450, 484
MaeIII	GTNAC	2 cut(s)	350, 540
MboII	GAAGA	1 cut(s)	59
MhlI	GDGCHC	1 cut(s)	219
MluCI	AATT	2 cut(s)	517, 602
MmeI	TCCRAC	2 cut(s)	355, 600
MnlI	CCTC	5 cut(s)	70, 110, 176, 263, 332
MseI	TTAA	1 cut(s)	596
MspI	CCGG	3 cut(s)	114, 306, 617
MspR9I	CCNGG	5 cut(s)	114, 180, 306, 387, 618
MvaI	CCWGG	2 cut(s)	180, 387
MvnI	CGCG	1 cut(s)	546
NciI	CCSGG	3 cut(s)	114, 306, 618
NlaIII	CATG	2 cut(s)	128, 158
NlaIV	GGNNCC	3 cut(s)	121, 187, 622
NmuCI	GTSAC	2 cut(s)	350, 540
NspI	RCATGY	1 cut(s)	158
PcsI	WCGNNNNNNNCGW	1 cut(s)	543
PfeI	GAWTC	2 cut(s)	557, 629
PkrI	GCNGC	4 cut(s)	248, 251, 418, 585
PmaCI	CACGTG	1 cut(s)	220
PmlI	CACGTG	1 cut(s)	220
Ppu21I	YACGTR	1 cut(s)	220
Psp6I	CCWGG	2 cut(s)	178, 385
PspCI	CACGTG	1 cut(s)	220
PspGI	CCWGG	2 cut(s)	178, 385
PspN4I	GGNNCC	3 cut(s)	121, 187, 622
PspPI	GGNCC	2 cut(s)	389, 621
PstI	CTGCAG	1 cut(s)	37
RsaI	GTAC	1 cut(s)	145
RsaNI	GTAC	1 cut(s)	144
SaqAI	TTAA	1 cut(s)	596
SatI	GCNGC	4 cut(s)	247, 250, 417, 584
Sau96I	GGNCC	2 cut(s)	389, 621
ScrFI	CCNGG	5 cut(s)	114, 180, 306, 387, 618
SduI	GDGCHC	1 cut(s)	219
SfaNI	GCATC	1 cut(s)	85
SfcI	CTRYAG	2 cut(s)	33, 406
SinI	GGWCC	2 cut(s)	389, 621
Sse9I	AATT	2 cut(s)	517, 602
SsiI	CCGC	6 cut(s)	29, 210, 246, 249, 279, 552
StyD4I	CCNGG	5 cut(s)	112, 178, 304, 385, 616
TaiI	ACGT	6 cut(s)	201, 222, 261, 267, 453, 487
TaqI	TCGA	1 cut(s)	129
TasI	AATT	2 cut(s)	517, 602
TauI	GCSGC	2 cut(s)	249, 252
TfiI	GAWTC	2 cut(s)	557, 629
Tru1I	TTAA	1 cut(s)	596
Tru9I	TTAA	1 cut(s)	596
TscAI	CASTG	2 cut(s)	22, 615
TseFI	GTSAC	2 cut(s)	350, 540
TseI	GCWGC	2 cut(s)	416, 583
Tsp45I	GTSAC	2 cut(s)	350, 540
TspDTI	ATGAA	1 cut(s)	512
TspGWI	ACGGA	1 cut(s)	613
TspRI	CASTG	2 cut(s)	22, 615
VneI	GTGCAC	1 cut(s)	215
VpaK11BI	GGWCC	2 cut(s)	389, 621
XapI	RAATTY	1 cut(s)	517
XceI	RCATGY	1 cut(s)	158
XcmI	CCANNNNNNNNNTGG	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.