Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000559

Physical Location & Seq

Genomic Coordinates Forward (+)

4970337 .. 4971773

Gene Structure 1437 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00162480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGTTGCAGTTCACACTGGTGGTAAGCCATGCTGCTCTATCACCTCAACTTTACTGGAATTCCGTCTTGCCAAACACACCAATGCCAAAAACTCTCAGTGAACTTCTGCAATCTGACTTCAGCGAAGAAAAGAGCACCTCAGTTGGGGTAGGGAAGGGTGGTGTGAACGTTAACGCAGGTAAAGGAAAGCCCGCAGGCACCAACGTCAATGTTGGGAAGGGTGGTGTTCATGTTAACACTGGAAAAGGAAAGCCTGGAGGAACCAATGTGAATGTCGGAAAGGGTGGTGTGAATGTGCACGCTCCAAAAGGAAAGCCAGGGGGTGGTACCAATGTCAACGTAGGGGGAAAAGGTGGTGTTGGAGTGCAGACTGGAAAGCCCGGCAAGAGAACCAACGTGGGTGTTGGCAAAGGAGGAGTGCATGTAAGCACCGGTCACAAGGGAAAACCTGTATATGTTGGAGTACAACCAGGCAAAAACCCATTCAATTACCAGTATGCTGCTACTGAGACTCAACTTCATGAAGATCCACAGGTCGCACTTTTCTTCTTGGAGAAGGACATGCATCCTGGCACAAAGATGAACTTGCACTTCACTACAAGTTCAGACACAGCAACTTTCCTTCCACGCAAAACTGCAGAGTCGATCCCTTTCTCATCTAATAAACTGCCCGAAATTTTGGACCAGTTTTCAGTGAAACCAGAATCTGCAGAAGCAGACACAATTAAGCAAACCATTGAAGAGTGCGAGAAACCAGGTATTAGAGGAGAGGAAAAATATTGTGCAACCTCTTTGGAGTCAATGGTTGACTTCAGCACTTCCAAGCTTGGAAGGAACATTCAGGCAGTCTCAACAGAGGTTGAAAAGGGAACCACCATGCAGAAGTACACAATATTGCCTGGAGTGAAGAAGCTGGCAGGTGACAAATCCATTGCATGCCATAAGCAGAACTATGCATATGCTGTCTTCTACTGCCATGCAACAACAACCACAAGAGCTTATATAGTGCTGCTGGAAGGTGCTGATGGAGTGAACGCTAAGGCAGTAGCAGTCTGCCACACAGACACCTCAGAATGGAACCCAAAGCATTTGGCCTTCCAAGTTCTCAAAGTTAAGCCAGGAACCATTCCCATCTGCCATTTTCTTCCCAGTGATCATATTGTCTGGGTTCCAAACCAGAAATCCACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0012505 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BURP

Protein Analysis

396

Amino Acids

42.06

Weight (kDa)

9.25

Isoelectric Point (pI)

31.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BURP	PF03181	181 - 391	7.8e-91	BURP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25610
fragaria_vesca	FvH4_2g36250 FvH4_2g36250 FvH4_2g36250 FvH4_7g14680
malus_domestica	MD04G1018200.v1.1 MD08G1119600.v1.1 MD08G1119700.v1.1 MD08G1119800.v1.1 MD08G1199500.v1.1 MD08G1203300.v1.1 MD15G1098800.v1.1 MD15G1219500.v1.1
prunus_persica	Prupe.1G453500_v2.0.a1 Prupe.1G453600_v2.0.a1 Prupe.1G453700_v2.0.a1 Prupe.1G465600_v2.0.a1 Prupe.1G475100_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475400_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475800_v2.0.a1 Prupe.1G475900_v2.0.a1 Prupe.1G476200_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476700_v2.0.a1 Prupe.1G477000_v2.0.a1 Prupe.1G477200_v2.0.a1 Prupe.1G477400_v2.0.a1 Prupe.1G477800_v2.0.a1 Prupe.4G169000_v2.0.a1 Prupe.4G257600_v2.0.a1
pyrus_communis	pycom08g16760 pycom14g01650 pycom15g09040 pycom15g09070
rosa_chinensis	RchiOBHm_Chr1g0356161 RchiOBHm_Chr1g0356461 RchiOBHm_Chr5g0051031
rosa_laevigata	RLG00000010869 RLG00000028095 RLG00000028100 RLG00000034755
rosa_multiflora	Rmu_co8314191.1_g000001 Rmu_co8337567.1_g000001 Rmu_sc0000281.1_g000019 Rmu_sc0000446.1_g000034 Rmu_sc0000782.1_g000019 Rmu_sc0001809.1_g000027 Rmu_sc0013768.1_g000023
rosa_roxburghii	Rroxscaffold_1G00029620 Rroxscaffold_4G00299510 Rroxscaffold_4G00299720 Rroxscaffold_7G00162480
rosa_rugosa	Rorug01G0249900 Rorug01G0250000 Rorug05G0572100 Rorug06G0342600
rosa_samantha	Rh1AG262800 Rh1AG263300 Rh1AG263600 Rh1BG231500 Rh1CG246400 Rh1CG246900 Rh1DG259200 Rh5AG337800 Rh5BG347500 Rh5CG374800 Rh5DG360600 Rh6BG447100 Rh6CG468100 Rh6DG454900
rosa_wichuraiana	Rw1G023250 Rw1G023300 Rw5G031920 Rw6G039620 Rw7G036720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	908
Acc36I	ACCTGC	2 cut(s)	167, 908
Acc65I	GGTACC	1 cut(s)	326
AccB1I	GGYRCC	2 cut(s)	197, 326
AccB7I	CCANNNNNTGG	1 cut(s)	323
AciI	CCGC	1 cut(s)	192
AclI	AACGTT	1 cut(s)	168
AclWI	GGATC	2 cut(s)	521, 640
AcsI	RAATTY	2 cut(s)	58, 675
AcuI	CTGAAG	2 cut(s)	103, 796
AfaI	GTAC	3 cut(s)	328, 465, 887
AfiI	CCNNNNNNNGG	3 cut(s)	144, 323, 1074
AgeI	ACCGGT	1 cut(s)	431
AgsI	TTSAA	3 cut(s)	487, 740, 863
AjnI	CCWGG	7 cut(s)	253, 316, 469, 568, 754, 898, 1117
AleI	CACNNNNGTG	1 cut(s)	17
AluBI	AGCT	3 cut(s)	826, 913, 998
AluI	AGCT	3 cut(s)	826, 913, 998
Alw21I	GWGCWC	2 cut(s)	137, 300
Alw26I	GTCTC	2 cut(s)	503, 853
Alw44I	GTGCAC	1 cut(s)	296
AlwI	GGATC	2 cut(s)	521, 640
AlwNI	CAGNNNCTG	1 cut(s)	707
AoxI	GGCC	1 cut(s)	1092
ApaLI	GTGCAC	1 cut(s)	296
ApeKI	GCWGC	3 cut(s)	32, 500, 1009
ApoI	RAATTY	2 cut(s)	58, 675
AsiGI	ACCGGT	1 cut(s)	431
Asp718I	GGTACC	1 cut(s)	326
AspS9I	GGNCC	1 cut(s)	682
AsuC2I	CCSGG	1 cut(s)	381
AsuHPI	GGTGA	2 cut(s)	33, 932
AvaII	GGWCC	1 cut(s)	682
BaeGI	GKGCMC	1 cut(s)	300
BaeI	ACNNNNGTAYC	2 cut(s)	318, 351
BanI	GGYRCC	2 cut(s)	197, 326
BbsI	GAAGAC	1 cut(s)	958
Bbv12I	GWGCWC	2 cut(s)	137, 300
BbvI	GCAGC	3 cut(s)	19, 487, 996
BccI	CCATC	2 cut(s)	1019, 1139
BciT130I	CCWGG	7 cut(s)	255, 318, 471, 570, 756, 900, 1119
BclI	TGATCA	1 cut(s)	1153
BcnI	CCSGG	1 cut(s)	381
BcoDI	GTCTC	2 cut(s)	503, 853
BfmI	CTRYAG	2 cut(s)	636, 708
BfuAI	ACCTGC	2 cut(s)	167, 908
BisI	GCNGC	3 cut(s)	33, 501, 1010
BlsI	GCNGC	3 cut(s)	34, 502, 1011
Bme1390I	CCNGG	8 cut(s)	255, 318, 381, 471, 570, 756, 900, 1119
Bme18I	GGWCC	1 cut(s)	682
BmgT120I	GGNCC	1 cut(s)	682
BmiI	GGNNCC	7 cut(s)	199, 262, 328, 871, 1079, 1123, 1170
BmrFI	CCNGG	8 cut(s)	255, 318, 381, 471, 570, 756, 900, 1119
BmrI	ACTGGG	1 cut(s)	1143
BmsI	GCATC	1 cut(s)	574
BmuI	ACTGGG	1 cut(s)	1143
BpiI	GAAGAC	1 cut(s)	958
BpmI	CTGGAG	2 cut(s)	276, 921
Bpu10I	CCTNAGC	1 cut(s)	1038
BpuMI	CCSGG	1 cut(s)	381
BsaJI	CCNNGG	1 cut(s)	317
BsaWI	WCCGGW	1 cut(s)	431
BsaXI	ACNNNNNCTCC	2 cut(s)	408, 438
Bsc4I	CCNNNNNNNGG	3 cut(s)	144, 323, 1074
Bse118I	RCCGGY	1 cut(s)	431
Bse1I	ACTGG	7 cut(s)	21, 59, 244, 376, 493, 685, 1149
Bse3DI	GCAATG	1 cut(s)	930
BseBI	CCWGG	7 cut(s)	255, 318, 471, 570, 756, 900, 1119
BseDI	CCNNGG	1 cut(s)	317
BseGI	GGATG	1 cut(s)	565
BseLI	CCNNNNNNNGG	3 cut(s)	144, 323, 1074
BseMI	GCAATG	1 cut(s)	930
BseMII	CTCAG	4 cut(s)	109, 153, 498, 1083
BseNI	ACTGG	7 cut(s)	21, 59, 244, 376, 493, 685, 1149
BseRI	GAGGAG	2 cut(s)	429, 780
BseSI	GKGCMC	1 cut(s)	300
BseXI	GCAGC	3 cut(s)	19, 487, 996
BsgI	GTGCAG	1 cut(s)	386
BshFI	GGCC	1 cut(s)	1094
BshNI	GGYRCC	2 cut(s)	197, 326
BshTI	ACCGGT	1 cut(s)	431
BsiHKAI	GWGCWC	2 cut(s)	137, 300
BsiSI	CCGG	2 cut(s)	381, 432
BslI	CCNNNNNNNGG	3 cut(s)	144, 323, 1074
BsmAI	GTCTC	2 cut(s)	503, 853
BsnI	GGCC	1 cut(s)	1094
Bsp1286I	GDGCHC	2 cut(s)	137, 300
Bsp143I	GATC	3 cut(s)	526, 645, 1153
BspACI	CCGC	1 cut(s)	192
BspANI	GGCC	1 cut(s)	1094
BspCNI	CTCAG	4 cut(s)	108, 152, 499, 1082
BspHI	TCATGA	1 cut(s)	520
BspLI	GGNNCC	7 cut(s)	199, 262, 328, 871, 1079, 1123, 1170
BspMAI	CTGCAG	2 cut(s)	640, 712
BspMI	ACCTGC	2 cut(s)	167, 908
BspPI	GGATC	2 cut(s)	521, 640
BspT107I	GGYRCC	2 cut(s)	197, 326
BsrDI	GCAATG	1 cut(s)	930
BsrFI	RCCGGY	1 cut(s)	431
BsrI	ACTGG	7 cut(s)	21, 59, 244, 376, 493, 685, 1149
BssAI	RCCGGY	1 cut(s)	431
BssECI	CCNNGG	1 cut(s)	317
BssMI	GATC	3 cut(s)	526, 645, 1153
Bst2UI	CCWGG	7 cut(s)	255, 318, 471, 570, 756, 900, 1119
Bst6I	CTCTTC	1 cut(s)	735
BstC8I	GCNNGC	5 cut(s)	192, 196, 300, 915, 937
BstDEI	CTNAG	5 cut(s)	95, 139, 507, 1038, 1069
BstF5I	GGATG	1 cut(s)	565
BstKTI	GATC	3 cut(s)	529, 648, 1156
BstMAI	GTCTC	2 cut(s)	503, 853
BstMBI	GATC	3 cut(s)	526, 645, 1153
BstNI	CCWGG	7 cut(s)	255, 318, 471, 570, 756, 900, 1119
BstNSI	RCATGY	3 cut(s)	425, 565, 939
BstSCI	CCNGG	8 cut(s)	253, 316, 379, 469, 568, 754, 898, 1117
BstSFI	CTRYAG	2 cut(s)	636, 708
BstSLI	GKGCMC	1 cut(s)	300
BstV1I	GCAGC	3 cut(s)	19, 487, 996
BstV2I	GAAGAC	1 cut(s)	958
BstX2I	RGATCY	1 cut(s)	526
BstYI	RGATCY	1 cut(s)	526
BsuRI	GGCC	1 cut(s)	1094
BtsCI	GGATG	1 cut(s)	565
BtsIMutI	CAGTG	5 cut(s)	14, 103, 237, 699, 1156
BveI	ACCTGC	2 cut(s)	167, 908
Cac8I	GCNNGC	5 cut(s)	192, 196, 300, 915, 937
CaiI	CAGNNNCTG	1 cut(s)	707
CciI	TCATGA	1 cut(s)	520
Cfr10I	RCCGGY	1 cut(s)	431
Cfr13I	GGNCC	1 cut(s)	682
CsiI	ACCWGGT	1 cut(s)	754
Csp6I	GTAC	3 cut(s)	327, 464, 886
CspAI	ACCGGT	1 cut(s)	431
CviAII	CATG	8 cut(s)	29, 230, 422, 521, 562, 877, 936, 977
CviQI	GTAC	3 cut(s)	327, 464, 886
DdeI	CTNAG	5 cut(s)	95, 139, 507, 1038, 1069
DpnI	GATC	3 cut(s)	528, 647, 1155
DpnII	GATC	3 cut(s)	526, 645, 1153
Eam1104I	CTCTTC	1 cut(s)	735
EarI	CTCTTC	1 cut(s)	735
Eco47I	GGWCC	1 cut(s)	682
Eco57I	CTGAAG	2 cut(s)	103, 796
EcoRI	GAATTC	1 cut(s)	58
EcoRII	CCWGG	7 cut(s)	253, 316, 469, 568, 754, 898, 1117
EcoT22I	ATGCAT	2 cut(s)	567, 958
FaeI	CATG	8 cut(s)	32, 233, 425, 524, 565, 880, 939, 980
FalI	AAGNNNNNCTT	2 cut(s)	569, 601
FatI	CATG	8 cut(s)	28, 229, 421, 520, 561, 876, 935, 976
FauI	CCCGC	1 cut(s)	199
FauNDI	CATATG	1 cut(s)	958
FbaI	TGATCA	1 cut(s)	1153
Fnu4HI	GCNGC	3 cut(s)	33, 501, 1010
FokI	GGATG	1 cut(s)	552
Fsp4HI	GCNGC	3 cut(s)	33, 501, 1010
GluI	GCNGC	3 cut(s)	33, 501, 1010
GsuI	CTGGAG	2 cut(s)	276, 921
HaeIII	GGCC	1 cut(s)	1094
HapII	CCGG	2 cut(s)	381, 432
Hin1II	CATG	8 cut(s)	32, 233, 425, 524, 565, 880, 939, 980
HincII	GTYRAC	4 cut(s)	172, 235, 337, 808
HindII	GTYRAC	4 cut(s)	172, 235, 337, 808
HindIII	AAGCTT	1 cut(s)	824
HinfI	GANTC	4 cut(s)	511, 641, 704, 797
HpaI	GTTAAC	2 cut(s)	172, 235
HpaII	CCGG	2 cut(s)	381, 432
HphI	GGTGA	2 cut(s)	33, 932
Hpy188I	TCNGA	4 cut(s)	115, 278, 607, 1072
Hpy188III	TCNNGA	1 cut(s)	521
HpyAV	CCTTC	7 cut(s)	148, 211, 550, 632, 825, 1010, 1105
HpyCH4IV	ACGT	4 cut(s)	168, 204, 339, 396
HpyF3I	CTNAG	5 cut(s)	95, 139, 507, 1038, 1069
HpySE526I	ACGT	4 cut(s)	168, 204, 339, 396
Hsp92II	CATG	8 cut(s)	32, 233, 425, 524, 565, 880, 939, 980
KpnI	GGTACC	1 cut(s)	330
Ksp22I	TGATCA	1 cut(s)	1153
KspAI	GTTAAC	2 cut(s)	172, 235
Kzo9I	GATC	3 cut(s)	526, 645, 1153
LmnI	GCTCC	1 cut(s)	307
Lsp1109I	GCAGC	3 cut(s)	19, 487, 996
LweI	GCATC	1 cut(s)	574
MabI	ACCWGGT	1 cut(s)	754
MaeII	ACGT	4 cut(s)	168, 204, 339, 396
MaeIII	GTNAC	2 cut(s)	434, 920
MalI	GATC	3 cut(s)	528, 647, 1155
MboI	GATC	3 cut(s)	526, 645, 1153
MboII	GAAGA	7 cut(s)	137, 536, 538, 752, 919, 958, 1136
MflI	RGATCY	1 cut(s)	526
MhlI	GDGCHC	2 cut(s)	137, 300
MluCI	AATT	4 cut(s)	58, 487, 675, 723
MlyI	GAGTC	3 cut(s)	505, 650, 806
MmeI	TCCRAC	3 cut(s)	256, 340, 439
MnlI	CCTC	9 cut(s)	54, 148, 251, 407, 758, 763, 799, 850, 1078
Mph1103I	ATGCAT	2 cut(s)	567, 958
MseI	TTAA	4 cut(s)	171, 234, 726, 1113
MslI	CAYNNNNRTG	3 cut(s)	17, 80, 578
MspI	CCGG	2 cut(s)	381, 432
MspR9I	CCNGG	8 cut(s)	255, 318, 381, 471, 570, 756, 900, 1119
MvaI	CCWGG	7 cut(s)	255, 318, 471, 570, 756, 900, 1119
NciI	CCSGG	1 cut(s)	381
NdeI	CATATG	1 cut(s)	958
NdeII	GATC	3 cut(s)	526, 645, 1153
NlaIII	CATG	8 cut(s)	32, 233, 425, 524, 565, 880, 939, 980
NlaIV	GGNNCC	7 cut(s)	199, 262, 328, 871, 1079, 1123, 1170
NmuCI	GTSAC	2 cut(s)	434, 920
NsiI	ATGCAT	2 cut(s)	567, 958
NspI	RCATGY	3 cut(s)	425, 565, 939
OliI	CACNNNNGTG	1 cut(s)	17
PaeI	GCATGC	1 cut(s)	939
PagI	TCATGA	1 cut(s)	520
PaqCI	CACCTGC	1 cut(s)	908
PfeI	GAWTC	1 cut(s)	704
PflMI	CCANNNNNTGG	1 cut(s)	323
PinAI	ACCGGT	1 cut(s)	431
PkrI	GCNGC	3 cut(s)	34, 502, 1011
PleI	GAGTC	3 cut(s)	505, 649, 805
PpsI	GAGTC	3 cut(s)	505, 649, 805
Psp1406I	AACGTT	1 cut(s)	168
Psp6I	CCWGG	7 cut(s)	253, 316, 469, 568, 754, 898, 1117
PspGI	CCWGG	7 cut(s)	253, 316, 469, 568, 754, 898, 1117
PspN4I	GGNNCC	7 cut(s)	199, 262, 328, 871, 1079, 1123, 1170
PspPI	GGNCC	1 cut(s)	682
PstI	CTGCAG	2 cut(s)	640, 712
PstNI	CAGNNNCTG	1 cut(s)	707
PsuI	RGATCY	1 cut(s)	526
RsaI	GTAC	3 cut(s)	328, 465, 887
RsaNI	GTAC	3 cut(s)	327, 464, 886
RseI	CAYNNNNRTG	3 cut(s)	17, 80, 578
SaqAI	TTAA	4 cut(s)	171, 234, 726, 1113
SatI	GCNGC	3 cut(s)	33, 501, 1010
Sau3AI	GATC	3 cut(s)	526, 645, 1153
Sau96I	GGNCC	1 cut(s)	682
SchI	GAGTC	3 cut(s)	505, 650, 806
ScrFI	CCNGG	8 cut(s)	255, 318, 381, 471, 570, 756, 900, 1119
SduI	GDGCHC	2 cut(s)	137, 300
SexAI	ACCWGGT	1 cut(s)	754
SfaNI	GCATC	1 cut(s)	574
SfcI	CTRYAG	2 cut(s)	636, 708
SinI	GGWCC	1 cut(s)	682
SmiMI	CAYNNNNRTG	3 cut(s)	17, 80, 578
SphI	GCATGC	1 cut(s)	939
Sse9I	AATT	4 cut(s)	58, 487, 675, 723
SsiI	CCGC	1 cut(s)	192
SspI	AATATT	2 cut(s)	779, 894
StyD4I	CCNGG	8 cut(s)	253, 316, 379, 469, 568, 754, 898, 1117
TaiI	ACGT	4 cut(s)	171, 207, 342, 399
TaqI	TCGA	1 cut(s)	644
TasI	AATT	4 cut(s)	58, 487, 675, 723
TatI	WGTACW	2 cut(s)	463, 885
TfiI	GAWTC	1 cut(s)	704
Tru1I	TTAA	4 cut(s)	171, 234, 726, 1113
Tru9I	TTAA	4 cut(s)	171, 234, 726, 1113
TscAI	CASTG	5 cut(s)	21, 103, 244, 699, 1156
TseFI	GTSAC	2 cut(s)	434, 920
TseI	GCWGC	3 cut(s)	32, 500, 1009
Tsp45I	GTSAC	2 cut(s)	434, 920
TspDTI	ATGAA	4 cut(s)	218, 509, 537, 596
TspGWI	ACGGA	1 cut(s)	52
TspRI	CASTG	5 cut(s)	21, 103, 244, 699, 1156
Van91I	CCANNNNNTGG	1 cut(s)	323
VneI	GTGCAC	1 cut(s)	296
VpaK11BI	GGWCC	1 cut(s)	682
XapI	RAATTY	2 cut(s)	58, 675
XceI	RCATGY	3 cut(s)	425, 565, 939
Zsp2I	ATGCAT	2 cut(s)	567, 958

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.