Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000691

Physical Location & Seq

Genomic Coordinates Reverse (-)

20273310 .. 20275916

Gene Structure 2607 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g29241.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGGTTATAAGGGTCACATCAGTGATGAAGAGGCTGCAGCTTTGGATGGATTTCAAAGTGCGCATGAGTCTGACAGTGGTGGTGAAGATGTTGGGCCTTTTAAGGTTGTTAATGAAAATGTTAGGATGGAACAAGAAAATGTTCAAGAACAAGTGCCTCAACAAAACCCTGTTCAAGTCGAAGCACCAAATGAAGGACCCCAAGAATATGAAGCACCATTGCCCTATGAAGAATCAAACTTTCAAGATGCATATCCTAGGTACTCTCAGACATCATCTATGCCAAACTTGGACAATCACATCATTAATGAGAATGAGAATGTGAACCTCAATGTCAATATTAATATCACCCAAGAATCTGGAACTCACAATGTGGTGCAACCAAATTCACAGGGAGGCTCAGAAGGACTTGCAAGGGGGTTTAAGCCTAGACAGTCACCTAGGCTTGCTGCAAAATCTGGCACAAGCACTCAGAATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010208 GO:0010468 GO:0010556 GO:0010927 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0022622 GO:0023052 GO:0030198 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033036 GO:0033037 GO:0042221 GO:0042545 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0048229 GO:0048364 GO:0048646 GO:0048731 GO:0048830 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051179 GO:0051252 GO:0051641 GO:0051716 GO:0052386 GO:0052543 GO:0052545 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0085029 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp B3

Protein Analysis

161

Amino Acids

17.52

Weight (kDa)

4.43

Isoelectric Point (pI)

59.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000691)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g09131 FvH4_5g29241 FvH4_5g38700 FvH4_6g10171 FvH4_6g31671 FvH4_7g25602
rosa_chinensis	RchiOBHm_Chr3g0477061 RchiOBHm_Chr5g0037961 RchiOBHm_Chr5g0045201 RchiOBHm_Chr5g0075681 RchiOBHm_Chr6g0255251 RchiOBHm_Chr6g0276481 RchiOBHm_Chr7g0188661 RchiOBHm_Chr7g0212591
rosa_laevigata	RLG00000014285 RLG00000019737 RLG00000020231 RLG00000027687 RLG00000028530 RLG00000029679
rosa_multiflora	Rmu_sc0008577.1_g000011 Rmu_sc0010616.1_g000005 Rmu_ssc0000255.1_g000048
rosa_roxburghii	Rroxscaffold_1G00039250 Rroxscaffold_2G00087850 Rroxscaffold_3G00231610 Rroxscaffold_3G00276260 Rroxscaffold_3G00276270
rosa_rugosa	Rorug01G0345200.1 Rorug02G0070900 Rorug03G0279300
rosa_samantha	Rh1AG087400 Rh1AG177300 Rh1BG218300 Rh1CG085600 Rh1CG164600 Rh1CG231700 Rh1CG234900 Rh1DG092000 Rh1DG244700 Rh3AG293200 Rh3BG241800 Rh3CG102600 Rh3CG163100 Rh3CG278400 Rh3DG163700 Rh3DG208200 Rh4AG190800 Rh4DG072100 Rh5AG271800 Rh5BG011900 Rh5BG311500 Rh5CG245000 Rh5CG402400 Rh5DG009700 Rh5DG321700 Rh6BG065700 Rh6BG431400 Rh6CG449000 Rh6DG208800 Rh7AG267300 Rh7BG437400 Rh7CG285800 Rh7CG418900 Rh7CG450100 Rh7DG275300
rosa_wichuraiana	Rw0G005630 Rw0G009300 Rw0G023360 Rw1G017030 Rw1G017050 Rw4G035810 Rw6G031650 Rw7G008390 Rw7G022990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	9
Acc16I	TGCGCA	1 cut(s)	63
AcsI	RAATTY	1 cut(s)	385
AdeI	CACNNNGTG	1 cut(s)	373
AfaI	GTAC	1 cut(s)	263
AfiI	CCNNNNNNNGG	1 cut(s)	194
AgsI	TTSAA	4 cut(s)	56, 146, 176, 245
AleI	CACNNNNGTG	1 cut(s)	21
AluBI	AGCT	1 cut(s)	41
AluI	AGCT	1 cut(s)	41
AoxI	GGCC	1 cut(s)	95
ApeKI	GCWGC	3 cut(s)	35, 38, 449
ApoI	RAATTY	1 cut(s)	385
AseI	ATTAAT	2 cut(s)	306, 342
Asp700I	GAANNNNTTC	1 cut(s)	141
AspA2I	CCTAGG	2 cut(s)	257, 440
AspLEI	GCGC	1 cut(s)	64
AspS9I	GGNCC	2 cut(s)	95, 197
AsuHPI	GGTGA	3 cut(s)	95, 340, 429
AvaII	GGWCC	1 cut(s)	197
AvrII	CCTAGG	2 cut(s)	257, 440
BbvI	GCAGC	3 cut(s)	22, 50, 436
BccI	CCATC	2 cut(s)	41, 121
BfaI	CTAG	3 cut(s)	258, 429, 441
BfmI	CTRYAG	1 cut(s)	36
BisI	GCNGC	3 cut(s)	36, 39, 450
BlnI	CCTAGG	2 cut(s)	257, 440
BlsI	GCNGC	3 cut(s)	37, 40, 451
Bme18I	GGWCC	1 cut(s)	197
BmgT120I	GGNCC	2 cut(s)	95, 197
BmiI	GGNNCC	1 cut(s)	199
BmsI	GCATC	1 cut(s)	238
BsaBI	GATNNNNATC	1 cut(s)	252
BsaJI	CCNNGG	2 cut(s)	257, 440
Bsc4I	CCNNNNNNNGG	1 cut(s)	194
Bse3DI	GCAATG	1 cut(s)	218
Bse8I	GATNNNNATC	1 cut(s)	252
BseDI	CCNNGG	2 cut(s)	257, 440
BseGI	GGATG	2 cut(s)	52, 132
BseJI	GATNNNNATC	1 cut(s)	252
BseLI	CCNNNNNNNGG	1 cut(s)	194
BseMI	GCAATG	1 cut(s)	218
BseMII	CTCAG	2 cut(s)	281, 414
BseXI	GCAGC	3 cut(s)	22, 50, 436
BshFI	GGCC	1 cut(s)	97
BslI	CCNNNNNNNGG	1 cut(s)	194
BsnI	GGCC	1 cut(s)	97
BspANI	GGCC	1 cut(s)	97
BspCNI	CTCAG	2 cut(s)	280, 413
BspLI	GGNNCC	1 cut(s)	199
BspMAI	CTGCAG	1 cut(s)	40
BsrDI	GCAATG	1 cut(s)	218
BssECI	CCNNGG	2 cut(s)	257, 440
BssT1I	CCWWGG	2 cut(s)	257, 440
Bst4CI	ACNGT	2 cut(s)	77, 435
Bst6I	CTCTTC	1 cut(s)	24
BstC8I	GCNNGC	1 cut(s)	447
BstDEI	CTNAG	3 cut(s)	267, 400, 471
BstF5I	GGATG	2 cut(s)	52, 132
BstHHI	GCGC	1 cut(s)	64
BstSFI	CTRYAG	1 cut(s)	36
BstV1I	GCAGC	3 cut(s)	22, 50, 436
BstXI	CCANNNNNNTGG	1 cut(s)	359
BsuRI	GGCC	1 cut(s)	97
BtsCI	GGATG	2 cut(s)	52, 132
BtsIMutI	CAGTG	2 cut(s)	28, 82
Cac8I	GCNNGC	1 cut(s)	447
CfoI	GCGC	1 cut(s)	64
Cfr13I	GGNCC	2 cut(s)	95, 197
Csp6I	GTAC	1 cut(s)	262
CviAII	CATG	1 cut(s)	65
CviJI	RGCY	6 cut(s)	35, 41, 97, 399, 427, 445
CviKI_1	RGCY	6 cut(s)	35, 41, 97, 399, 427, 445
CviQI	GTAC	1 cut(s)	262
DdeI	CTNAG	3 cut(s)	267, 400, 471
DraIII	CACNNNGTG	1 cut(s)	373
Eam1104I	CTCTTC	1 cut(s)	24
EarI	CTCTTC	1 cut(s)	24
Eco130I	CCWWGG	2 cut(s)	257, 440
Eco47I	GGWCC	1 cut(s)	197
EcoO109I	RGGNCCY	1 cut(s)	197
EcoT14I	CCWWGG	2 cut(s)	257, 440
EcoT22I	ATGCAT	1 cut(s)	253
ErhI	CCWWGG	2 cut(s)	257, 440
FaeI	CATG	1 cut(s)	68
FaiI	YATR	6 cut(s)	9, 66, 210, 228, 253, 281
FatI	CATG	1 cut(s)	64
Fnu4HI	GCNGC	3 cut(s)	36, 39, 450
FokI	GGATG	2 cut(s)	59, 139
Fsp4HI	GCNGC	3 cut(s)	36, 39, 450
FspAI	RTGCGCAY	1 cut(s)	63
FspBI	CTAG	3 cut(s)	258, 429, 441
FspI	TGCGCA	1 cut(s)	63
GlaI	GCGC	1 cut(s)	63
GluI	GCNGC	3 cut(s)	36, 39, 450
HaeIII	GGCC	1 cut(s)	97
HhaI	GCGC	1 cut(s)	64
Hin1II	CATG	1 cut(s)	68
Hin6I	GCGC	1 cut(s)	62
HinP1I	GCGC	1 cut(s)	62
HinfI	GANTC	3 cut(s)	68, 233, 356
HphI	GGTGA	3 cut(s)	95, 340, 429
Hpy166II	GTNNAC	1 cut(s)	325
Hpy188I	TCNGA	4 cut(s)	73, 270, 403, 474
Hpy188III	TCNNGA	3 cut(s)	146, 245, 360
Hpy8I	GTNNAC	1 cut(s)	325
HpyAV	CCTTC	2 cut(s)	188, 398
HpyCH4III	ACNGT	2 cut(s)	77, 435
HpyCH4V	TGCA	5 cut(s)	38, 251, 379, 413, 452
HpyF3I	CTNAG	3 cut(s)	267, 400, 471
Hsp92II	CATG	1 cut(s)	68
HspAI	GCGC	1 cut(s)	62
LpnPI	CCDG	4 cut(s)	183, 345, 377, 444
Lsp1109I	GCAGC	3 cut(s)	22, 50, 436
LweI	GCATC	1 cut(s)	238
MaeI	CTAG	3 cut(s)	258, 429, 441
MaeIII	GTNAC	2 cut(s)	14, 435
MboII	GAAGA	3 cut(s)	41, 98, 242
MluCI	AATT	1 cut(s)	385
MlyI	GAGTC	1 cut(s)	77
MnlI	CCTC	4 cut(s)	25, 168, 338, 389
Mph1103I	ATGCAT	1 cut(s)	253
MroXI	GAANNNNTTC	1 cut(s)	141
MseI	TTAA	5 cut(s)	102, 111, 306, 342, 423
MslI	CAYNNNNRTG	1 cut(s)	21
NlaIII	CATG	1 cut(s)	68
NlaIV	GGNNCC	1 cut(s)	199
NmuCI	GTSAC	2 cut(s)	14, 435
NsbI	TGCGCA	1 cut(s)	63
NsiI	ATGCAT	1 cut(s)	253
OliI	CACNNNNGTG	1 cut(s)	21
PdmI	GAANNNNTTC	1 cut(s)	141
PfeI	GAWTC	2 cut(s)	233, 356
PkrI	GCNGC	3 cut(s)	37, 40, 451
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
PpuMI	RGGWCCY	1 cut(s)	197
PshBI	ATTAAT	2 cut(s)	306, 342
PsiI	TTATAA	1 cut(s)	9
Psp5II	RGGWCCY	1 cut(s)	197
PspN4I	GGNNCC	1 cut(s)	199
PspPI	GGNCC	2 cut(s)	95, 197
PspPPI	RGGWCCY	1 cut(s)	197
PstI	CTGCAG	1 cut(s)	40
RsaI	GTAC	1 cut(s)	263
RsaNI	GTAC	1 cut(s)	262
RseI	CAYNNNNRTG	1 cut(s)	21
SaqAI	TTAA	5 cut(s)	102, 111, 306, 342, 423
SatI	GCNGC	3 cut(s)	36, 39, 450
Sau96I	GGNCC	2 cut(s)	95, 197
SchI	GAGTC	1 cut(s)	77
SetI	ASST	5 cut(s)	43, 108, 263, 330, 442
SfaNI	GCATC	1 cut(s)	238
SfcI	CTRYAG	1 cut(s)	36
SinI	GGWCC	1 cut(s)	197
SmiMI	CAYNNNNRTG	1 cut(s)	21
Sse9I	AATT	1 cut(s)	385
SspI	AATATT	1 cut(s)	340
SspMI	CTAG	3 cut(s)	258, 429, 441
StyI	CCWWGG	2 cut(s)	257, 440
TaaI	ACNGT	2 cut(s)	77, 435
TaqI	TCGA	1 cut(s)	180
TasI	AATT	1 cut(s)	385
TfiI	GAWTC	2 cut(s)	233, 356
Tru1I	TTAA	5 cut(s)	102, 111, 306, 342, 423
Tru9I	TTAA	5 cut(s)	102, 111, 306, 342, 423
TscAI	CASTG	2 cut(s)	28, 82
TseFI	GTSAC	2 cut(s)	14, 435
TseI	GCWGC	3 cut(s)	35, 38, 449
Tsp45I	GTSAC	2 cut(s)	14, 435
TspDTI	ATGAA	5 cut(s)	42, 129, 207, 225, 243
TspRI	CASTG	2 cut(s)	28, 82
VpaK11BI	GGWCC	1 cut(s)	197
VspI	ATTAAT	2 cut(s)	306, 342
XapI	RAATTY	1 cut(s)	385
XmaJI	CCTAGG	2 cut(s)	257, 440
XmnI	GAANNNNTTC	1 cut(s)	141
XspI	CTAG	3 cut(s)	258, 429, 441
Zsp2I	ATGCAT	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.