Rh7CG450100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000691
Physical Location & Seq
Forward (+)
59220690 .. 59222013
1324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG450100.1

Sequence Viewer

Length: 567 bp
ATGGGAATAAAGGAAGTACAGCGCTCCAATGATAAAGAAATCCTTCAAATTACTTACATAGGAAGGCACACATGTACACTAGCCTCCACCAGCAATGGAGGAAGGGTTGATAGCAGTACCTCCGCGGCCAATGGTGCATCGAGTGTTCATGACCAAGTTGTCCAATCACCAAGTTCACCAGGAGCCAATGGTCATGGAGGAAATGTAACCAGAGTAGCCGACAATCCTGTTAATGACAACAATATGATCGTGTTACAAGATGCAAGCTCACAGGATATGGAACCGACACCCTCAAATGTTGCAAGTGTTTCATCTCAACCAGTGATCTCATCACCATCTCTGACTCAAGTTAACCTTCAACCTCAGTCTTGTTCGCAGCCCATTGTTATAAGATCATCTCCTAATTCCAGAACAATTGTATCTCCCAACACAGGGATGTTAATGAAGACCAAGTCAGTAGCACAGAAGGCTAAACCCATGCCTAAACCTGTGACAAAAACCAGCACAAGAGCAAGAGCCCAACAAGGACCAAAGGAGGATTCCGACAACAAAATGTGGAAGCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

188

Amino Acids

19.86

Weight (kDa)

9.59

Isoelectric Point (pI)

64.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 389
AasI GACNNNNNNGTC 1 cut(s) 158
AccII CGCG 1 cut(s) 125
AciI CCGC 2 cut(s) 123, 125
AcoI YGGCCR 1 cut(s) 126
AfaI GTAC 3 cut(s) 18, 76, 118
AfeI AGCGCT 1 cut(s) 23
AfiI CCNNNNNNNGG 2 cut(s) 431, 432
AflIII ACRYGT 1 cut(s) 71
AgsI TTSAA 2 cut(s) 47, 359
AjnI CCWGG 1 cut(s) 178
AjuI GAANNNNNNNTTGG 2 cut(s) 523, 555
AluBI AGCT 1 cut(s) 267
AluI AGCT 1 cut(s) 267
Aor51HI AGCGCT 1 cut(s) 23
AoxI GGCC 1 cut(s) 126
ApeKI GCWGC 1 cut(s) 376
Asp700I GAANNNNTTC 1 cut(s) 42
AspLEI GCGC 1 cut(s) 24
AspS9I GGNCC 1 cut(s) 527
AsuHPI GGTGA 3 cut(s) 159, 168, 324
AvaII GGWCC 1 cut(s) 527
BaeI ACNNNNGTAYC 2 cut(s) 402, 435
BanII GRGCYC 1 cut(s) 520
BbsI GAAGAC 1 cut(s) 452
BbvI GCAGC 1 cut(s) 388
BccI CCATC 1 cut(s) 343
BciT130I CCWGG 1 cut(s) 180
BfaI CTAG 1 cut(s) 80
BfoI RGCGCY 1 cut(s) 25
BisI GCNGC 2 cut(s) 126, 377
BlsI GCNGC 2 cut(s) 127, 378
Bme1390I CCNGG 1 cut(s) 180
Bme18I GGWCC 1 cut(s) 527
BmgT120I GGNCC 1 cut(s) 527
BmiI GGNNCC 2 cut(s) 184, 282
BmrFI CCNGG 1 cut(s) 180
BmsI GCATC 2 cut(s) 146, 250
BpiI GAAGAC 1 cut(s) 452
BpuEI CTTGAG 1 cut(s) 330
BsaJI CCNNGG 1 cut(s) 123
BsaXI ACNNNNNCTCC 4 cut(s) 90, 120, 189, 219
Bsc4I CCNNNNNNNGG 2 cut(s) 431, 432
Bse1I ACTGG 1 cut(s) 320
Bse3DI GCAATG 1 cut(s) 100
BseBI CCWGG 1 cut(s) 180
BseDI CCNNGG 1 cut(s) 123
BseGI GGATG 1 cut(s) 441
BseLI CCNNNNNNNGG 2 cut(s) 431, 432
BseMI GCAATG 1 cut(s) 100
BseMII CTCAG 1 cut(s) 377
BseNI ACTGG 1 cut(s) 320
BseXI GCAGC 1 cut(s) 388
Bsh1236I CGCG 1 cut(s) 125
BshFI GGCC 1 cut(s) 128
BslI CCNNNNNNNGG 2 cut(s) 431, 432
BsnI GGCC 1 cut(s) 128
Bsp1286I GDGCHC 1 cut(s) 520
Bsp1407I TGTACA 1 cut(s) 74
Bsp143I GATC 3 cut(s) 246, 324, 392
BspACI CCGC 2 cut(s) 123, 125
BspANI GGCC 1 cut(s) 128
BspCNI CTCAG 1 cut(s) 376
BspFNI CGCG 1 cut(s) 125
BspHI TCATGA 1 cut(s) 148
BspLI GGNNCC 2 cut(s) 184, 282
BsrDI GCAATG 1 cut(s) 100
BsrGI TGTACA 1 cut(s) 74
BsrI ACTGG 1 cut(s) 320
BssECI CCNNGG 1 cut(s) 123
BssMI GATC 3 cut(s) 246, 324, 392
Bst2UI CCWGG 1 cut(s) 180
BstAUI TGTACA 1 cut(s) 74
BstC8I GCNNGC 1 cut(s) 265
BstDEI CTNAG 1 cut(s) 363
BstDSI CCRYGG 1 cut(s) 123
BstF5I GGATG 1 cut(s) 441
BstFNI CGCG 1 cut(s) 125
BstH2I RGCGCY 1 cut(s) 25
BstHHI GCGC 1 cut(s) 24
BstKTI GATC 3 cut(s) 249, 327, 395
BstMBI GATC 3 cut(s) 246, 324, 392
BstMWI GCNNNNNNNGC 2 cut(s) 134, 467
BstNI CCWGG 1 cut(s) 180
BstNSI RCATGY 1 cut(s) 75
BstSCI CCNGG 1 cut(s) 178
BstUI CGCG 1 cut(s) 125
BstV1I GCAGC 1 cut(s) 388
BstV2I GAAGAC 1 cut(s) 452
BsuRI GGCC 1 cut(s) 128
BtgI CCRYGG 1 cut(s) 123
BtsCI GGATG 1 cut(s) 441
BtsIMutI CAGTG 1 cut(s) 327
Cac8I GCNNGC 1 cut(s) 265
CciI TCATGA 1 cut(s) 148
CfoI GCGC 1 cut(s) 24
Cfr13I GGNCC 1 cut(s) 527
Cfr42I CCGCGG 1 cut(s) 126
Csp6I GTAC 3 cut(s) 17, 75, 117
CviAII CATG 4 cut(s) 72, 149, 194, 478
CviJI RGCY 9 cut(s) 83, 128, 185, 218, 267, 379, 470, 518, 562
CviKI_1 RGCY 9 cut(s) 83, 128, 185, 218, 267, 379, 470, 518, 562
CviQI GTAC 3 cut(s) 17, 75, 117
DdeI CTNAG 1 cut(s) 363
DpnI GATC 3 cut(s) 248, 326, 394
DpnII GATC 3 cut(s) 246, 324, 392
DrdI GACNNNNNNGTC 1 cut(s) 158
DseDI GACNNNNNNGTC 1 cut(s) 158
EaeI YGGCCR 1 cut(s) 126
Eco24I GRGCYC 1 cut(s) 520
Eco47I GGWCC 1 cut(s) 527
Eco47III AGCGCT 1 cut(s) 23
EcoRII CCWGG 1 cut(s) 178
EcoT38I GRGCYC 1 cut(s) 520
FaeI CATG 4 cut(s) 75, 152, 197, 481
FaiI YATR 8 cut(s) 59, 73, 150, 195, 245, 278, 389, 479
FalI AAGNNNNNCTT 4 cut(s) 27, 59, 339, 371
FatI CATG 4 cut(s) 71, 148, 193, 477
Fnu4HI GCNGC 2 cut(s) 126, 377
FokI GGATG 1 cut(s) 448
FriOI GRGCYC 1 cut(s) 520
Fsp4HI GCNGC 2 cut(s) 126, 377
FspBI CTAG 1 cut(s) 80
GlaI GCGC 1 cut(s) 23
GluI GCNGC 2 cut(s) 126, 377
HaeII RGCGCY 1 cut(s) 25
HaeIII GGCC 1 cut(s) 128
HhaI GCGC 1 cut(s) 24
Hin1II CATG 4 cut(s) 75, 152, 197, 481
Hin6I GCGC 1 cut(s) 22
HinP1I GCGC 1 cut(s) 22
HincII GTYRAC 1 cut(s) 352
HindII GTYRAC 1 cut(s) 352
HinfI GANTC 2 cut(s) 343, 539
HpaI GTTAAC 1 cut(s) 352
HphI GGTGA 3 cut(s) 159, 168, 324
Hpy166II GTNNAC 3 cut(s) 77, 176, 352
Hpy188I TCNGA 2 cut(s) 342, 544
Hpy188III TCNNGA 2 cut(s) 149, 408
Hpy8I GTNNAC 3 cut(s) 77, 176, 352
HpyAV CCTTC 5 cut(s) 53, 57, 96, 365, 460
HpyCH4V TGCA 3 cut(s) 137, 263, 302
HpyF10VI GCNNNNNNNGC 2 cut(s) 134, 467
HpyF3I CTNAG 1 cut(s) 363
Hsp92II CATG 4 cut(s) 75, 152, 197, 481
HspAI GCGC 1 cut(s) 22
KspAI GTTAAC 1 cut(s) 352
KspI CCGCGG 1 cut(s) 126
Kzo9I GATC 3 cut(s) 246, 324, 392
LmnI GCTCC 2 cut(s) 29, 182
Lsp1109I GCAGC 1 cut(s) 388
LweI GCATC 2 cut(s) 146, 250
MaeI CTAG 1 cut(s) 80
MaeIII GTNAC 3 cut(s) 205, 252, 490
MalI GATC 3 cut(s) 248, 326, 394
MboI GATC 3 cut(s) 246, 324, 392
MboII GAAGA 1 cut(s) 457
MfeI CAATTG 1 cut(s) 414
MhlI GDGCHC 1 cut(s) 520
MluCI AATT 3 cut(s) 48, 403, 414
MlyI GAGTC 1 cut(s) 337
MmeI TCCRAC 1 cut(s) 567
MnlI CCTC 7 cut(s) 92, 94, 130, 191, 301, 372, 529
MroXI GAANNNNTTC 1 cut(s) 42
MseI TTAA 3 cut(s) 231, 351, 440
MslI CAYNNNNRTG 1 cut(s) 434
MspA1I CMGCKG 1 cut(s) 125
MspR9I CCNGG 1 cut(s) 180
MunI CAATTG 1 cut(s) 414
MvaI CCWGG 1 cut(s) 180
MvnI CGCG 1 cut(s) 125
MwoI GCNNNNNNNGC 2 cut(s) 134, 467
NdeII GATC 3 cut(s) 246, 324, 392
NlaIII CATG 4 cut(s) 75, 152, 197, 481
NlaIV GGNNCC 2 cut(s) 184, 282
NmuCI GTSAC 1 cut(s) 490
NspI RCATGY 1 cut(s) 75
PagI TCATGA 1 cut(s) 148
PciI ACATGT 1 cut(s) 71
PdmI GAANNNNTTC 1 cut(s) 42
PfeI GAWTC 1 cut(s) 539
PflFI GACNNNGTC 1 cut(s) 451
PkrI GCNGC 2 cut(s) 127, 378
PleI GAGTC 1 cut(s) 337
PpsI GAGTC 1 cut(s) 337
PscI ACATGT 1 cut(s) 71
PsiI TTATAA 1 cut(s) 389
Psp6I CCWGG 1 cut(s) 178
PspGI CCWGG 1 cut(s) 178
PspN4I GGNNCC 2 cut(s) 184, 282
PspPI GGNCC 1 cut(s) 527
PsyI GACNNNGTC 1 cut(s) 451
RsaI GTAC 3 cut(s) 18, 76, 118
RsaNI GTAC 3 cut(s) 17, 75, 117
RseI CAYNNNNRTG 1 cut(s) 434
SacII CCGCGG 1 cut(s) 126
SaqAI TTAA 3 cut(s) 231, 351, 440
SatI GCNGC 2 cut(s) 126, 377
Sau3AI GATC 3 cut(s) 246, 324, 392
Sau96I GGNCC 1 cut(s) 527
SchI GAGTC 1 cut(s) 337
ScrFI CCNGG 1 cut(s) 180
SduI GDGCHC 1 cut(s) 520
SetI ASST 5 cut(s) 122, 269, 357, 364, 490
SfaNI GCATC 2 cut(s) 146, 250
Sfr303I CCGCGG 1 cut(s) 126
SgrBI CCGCGG 1 cut(s) 126
SinI GGWCC 1 cut(s) 527
SmiMI CAYNNNNRTG 1 cut(s) 434
SmlI CTYRAG 1 cut(s) 345
SmoI CTYRAG 1 cut(s) 345
Sse9I AATT 3 cut(s) 48, 403, 414
SsiI CCGC 2 cut(s) 123, 125
SspMI CTAG 1 cut(s) 80
StyD4I CCNGG 1 cut(s) 178
TaqI TCGA 1 cut(s) 140
TasI AATT 3 cut(s) 48, 403, 414
TatI WGTACW 2 cut(s) 16, 74
TauI GCSGC 1 cut(s) 128
TfiI GAWTC 1 cut(s) 539
Tru1I TTAA 3 cut(s) 231, 351, 440
Tru9I TTAA 3 cut(s) 231, 351, 440
TscAI CASTG 1 cut(s) 327
TseFI GTSAC 1 cut(s) 490
TseI GCWGC 1 cut(s) 376
Tsp45I GTSAC 1 cut(s) 490
TspDTI ATGAA 3 cut(s) 137, 300, 458
TspRI CASTG 1 cut(s) 327
Tth111I GACNNNGTC 1 cut(s) 451
VpaK11BI GGWCC 1 cut(s) 527
XceI RCATGY 1 cut(s) 75
XmnI GAANNNNTTC 1 cut(s) 42
XspI CTAG 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.