Rh1CG234900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000691
Physical Location & Seq
Reverse (-)
49223426 .. 49265648
42223 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG234900.1

Sequence Viewer

Length: 423 bp
ATGACTGCCATCTTCACTTTTCTTGTTCATTTCGAAGGAAAGCATGGAGAGGAGGCCACTATTCTAAATCTCAAAGTCAATAGAAGTTCCTCCCAGTTGATTATCAATGGCAGAATCAACCAAGAGGTTAACAATGCAGGGATTGTAGGAGCTATAGTTGATAATACTGATGGTTTTAAAGCTGCAGTTGCAGAAGTTGCATCTGGTGGTTGTTTCTCAAACAAGAGTGAGCGATCTTATGCTTGCAAAAAGGTGAACAATGCAGGGATTGGTGGATCCATAATTGATGCTGAGGGTGCTAAAGCTGCAGTTGCAGCTGGAGGACAAATTGATTGGCAAAAACTGATTGTTGTCATAGTACTCTATTGCTCCGACGATATAAACAGAGTCCCTGCAAATAAGACTCAGGGTCAAGCAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

14.69

Weight (kDa)

7.71

Isoelectric Point (pI)

25.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 270, 283
AfaI GTAC 1 cut(s) 360
AhdI GACNNNNNGTC 1 cut(s) 408
AluBI AGCT 4 cut(s) 152, 182, 305, 317
AluI AGCT 4 cut(s) 152, 182, 305, 317
AlwI GGATC 2 cut(s) 270, 283
AoxI GGCC 1 cut(s) 54
ApeKI GCWGC 3 cut(s) 182, 305, 314
AsuHPI GGTGA 1 cut(s) 265
AsuII TTCGAA 1 cut(s) 33
BamHI GGATCC 1 cut(s) 275
BbvCI CCTCAGC 1 cut(s) 291
BbvI GCAGC 3 cut(s) 169, 292, 326
BccI CCATC 2 cut(s) 17, 164
BfmI CTRYAG 3 cut(s) 153, 183, 306
BisI GCNGC 3 cut(s) 183, 306, 315
BlsI GCNGC 3 cut(s) 184, 307, 316
BmcAI AGTACT 1 cut(s) 360
BmeRI GACNNNNNGTC 1 cut(s) 408
BmiI GGNNCC 1 cut(s) 277
BmrI ACTGGG 1 cut(s) 88
BmsI GCATC 2 cut(s) 209, 277
BmuI ACTGGG 1 cut(s) 88
BpmI CTGGAG 1 cut(s) 339
Bpu10I CCTNAGC 1 cut(s) 291
Bpu14I TTCGAA 1 cut(s) 33
BsaXI ACNNNNNCTCC 2 cut(s) 141, 171
Bse1I ACTGG 1 cut(s) 94
BseMII CTCAG 2 cut(s) 282, 419
BseNI ACTGG 1 cut(s) 94
BseRI GAGGAG 1 cut(s) 65
BseXI GCAGC 3 cut(s) 169, 292, 326
BshFI GGCC 1 cut(s) 56
BslFI GGGAC 1 cut(s) 374
BsmFI GGGAC 1 cut(s) 374
BsnI GGCC 1 cut(s) 56
Bsp119I TTCGAA 1 cut(s) 33
Bsp143I GATC 2 cut(s) 233, 275
BspANI GGCC 1 cut(s) 56
BspCNI CTCAG 2 cut(s) 283, 418
BspLI GGNNCC 1 cut(s) 277
BspMAI CTGCAG 2 cut(s) 187, 310
BspPI GGATC 2 cut(s) 270, 283
BspT104I TTCGAA 1 cut(s) 33
BsrI ACTGG 1 cut(s) 94
BssMI GATC 2 cut(s) 233, 275
BstAPI GCANNNNNTGC 1 cut(s) 197
BstBI TTCGAA 1 cut(s) 33
BstC8I GCNNGC 1 cut(s) 244
BstDEI CTNAG 2 cut(s) 291, 405
BstKTI GATC 2 cut(s) 236, 278
BstMBI GATC 2 cut(s) 233, 275
BstMWI GCNNNNNNNGC 6 cut(s) 188, 197, 296, 305, 311, 314
BstSFI CTRYAG 3 cut(s) 153, 183, 306
BstV1I GCAGC 3 cut(s) 169, 292, 326
BstX2I RGATCY 1 cut(s) 275
BstYI RGATCY 1 cut(s) 275
BsuRI GGCC 1 cut(s) 56
Cac8I GCNNGC 1 cut(s) 244
Csp6I GTAC 1 cut(s) 359
CviAII CATG 1 cut(s) 44
CviJI RGCY 5 cut(s) 56, 152, 182, 305, 317
CviKI_1 RGCY 5 cut(s) 56, 152, 182, 305, 317
CviQI GTAC 1 cut(s) 359
DdeI CTNAG 2 cut(s) 291, 405
DpnI GATC 2 cut(s) 235, 277
DpnII GATC 2 cut(s) 233, 275
DraI TTTAAA 1 cut(s) 178
DriI GACNNNNNGTC 1 cut(s) 408
Eam1105I GACNNNNNGTC 1 cut(s) 408
FaeI CATG 1 cut(s) 47
FaiI YATR 6 cut(s) 45, 155, 240, 281, 356, 380
FaqI GGGAC 1 cut(s) 374
FatI CATG 1 cut(s) 43
Fnu4HI GCNGC 3 cut(s) 183, 306, 315
Fsp4HI GCNGC 3 cut(s) 183, 306, 315
GluI GCNGC 3 cut(s) 183, 306, 315
GsuI CTGGAG 1 cut(s) 339
HaeIII GGCC 1 cut(s) 56
Hin1II CATG 1 cut(s) 47
HincII GTYRAC 1 cut(s) 130
HindII GTYRAC 1 cut(s) 130
HinfI GANTC 3 cut(s) 114, 387, 403
HpaI GTTAAC 1 cut(s) 130
HphI GGTGA 1 cut(s) 265
Hpy166II GTNNAC 2 cut(s) 130, 256
Hpy188I TCNGA 1 cut(s) 373
Hpy8I GTNNAC 2 cut(s) 130, 256
Hpy99I CGWCG 1 cut(s) 377
HpyAV CCTTC 1 cut(s) 29
HpyCH4V TGCA 9 cut(s) 137, 185, 191, 200, 246, 263, 308, 314, 395
HpyF10VI GCNNNNNNNGC 6 cut(s) 188, 197, 296, 305, 311, 314
HpyF3I CTNAG 2 cut(s) 291, 405
Hsp92II CATG 1 cut(s) 47
KspAI GTTAAC 1 cut(s) 130
Kzo9I GATC 2 cut(s) 233, 275
LmnI GCTCC 2 cut(s) 149, 374
LpnPI CCDG 7 cut(s) 107, 123, 189, 249, 303, 392, 405
Lsp1109I GCAGC 3 cut(s) 169, 292, 326
LweI GCATC 2 cut(s) 209, 277
MalI GATC 2 cut(s) 235, 277
MboI GATC 2 cut(s) 233, 275
MboII GAAGA 1 cut(s) 4
MflI RGATCY 1 cut(s) 275
MluCI AATT 2 cut(s) 282, 327
MlyI GAGTC 2 cut(s) 396, 397
MmeI TCCRAC 1 cut(s) 396
MnlI CCTC 6 cut(s) 43, 46, 100, 118, 286, 314
MseI TTAA 2 cut(s) 129, 177
MspA1I CMGCKG 1 cut(s) 317
MwoI GCNNNNNNNGC 6 cut(s) 188, 197, 296, 305, 311, 314
NdeII GATC 2 cut(s) 233, 275
NlaIII CATG 1 cut(s) 47
NlaIV GGNNCC 1 cut(s) 277
NspV TTCGAA 1 cut(s) 33
PfeI GAWTC 1 cut(s) 114
PkrI GCNGC 3 cut(s) 184, 307, 316
PleI GAGTC 2 cut(s) 395, 397
PpsI GAGTC 2 cut(s) 395, 397
PspN4I GGNNCC 1 cut(s) 277
PstI CTGCAG 2 cut(s) 187, 310
PsuI RGATCY 1 cut(s) 275
PvuII CAGCTG 1 cut(s) 317
RsaI GTAC 1 cut(s) 360
RsaNI GTAC 1 cut(s) 359
SaqAI TTAA 2 cut(s) 129, 177
SatI GCNGC 3 cut(s) 183, 306, 315
Sau3AI GATC 2 cut(s) 233, 275
ScaI AGTACT 1 cut(s) 360
SchI GAGTC 2 cut(s) 396, 397
SetI ASST 6 cut(s) 129, 154, 184, 255, 307, 319
SfaNI GCATC 2 cut(s) 209, 277
SfcI CTRYAG 3 cut(s) 153, 183, 306
SfuI TTCGAA 1 cut(s) 33
Sse9I AATT 2 cut(s) 282, 327
TaqI TCGA 1 cut(s) 33
TasI AATT 2 cut(s) 282, 327
TatI WGTACW 1 cut(s) 358
TfiI GAWTC 1 cut(s) 114
Tru1I TTAA 2 cut(s) 129, 177
Tru9I TTAA 2 cut(s) 129, 177
TseI GCWGC 3 cut(s) 182, 305, 314
TspDTI ATGAA 1 cut(s) 17
ZrmI AGTACT 1 cut(s) 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.