Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0000691

Physical Location & Seq

Genomic Coordinates Reverse (-)

62640698 .. 62641702

Gene Structure 1005 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G035810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGCTTGCATATGGTCCAGCCATAAACCCAATTCCTGGTGTTGAAGAATGGGATGTTATCGAAAAACCAATTCTGCCACCACAGTACACTAGAGGACCTGGAAGGCCTAAATTCTCAAGAAACAAAGAACCAGATGAGCAACATCTACCACCTCCTGGAACCACTAAGCCACCTTCTGGAACTGAGAAGTTACCAAGGGCTTACTATCAAGGAATTACATGTGGACGATGCCATAAGAAAGGGCATAATAGCAGAACTTGTGCAAGAAGAGAAGCACAGTCCCAAACAAGGATTGAATCACCACCTTCTCAAAACTATGGAAATGATGTGCATGTTGATCAAGCTTCACATGATGACAATCAAATACCTATGAGAATTCAGCGCAACAAAGCCCCTGCACCAAATGAAAGATCTCAGCGCAAGCCAAATTGGAAGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DBD_Tnp_Mut MULE SWIM

Protein Analysis

146

Amino Acids

16.52

Weight (kDa)

9.63

Isoelectric Point (pI)

62.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000691)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g09131 FvH4_5g29241 FvH4_5g38700 FvH4_6g10171 FvH4_6g31671 FvH4_7g25602
rosa_chinensis	RchiOBHm_Chr3g0477061 RchiOBHm_Chr5g0037961 RchiOBHm_Chr5g0045201 RchiOBHm_Chr5g0075681 RchiOBHm_Chr6g0255251 RchiOBHm_Chr6g0276481 RchiOBHm_Chr7g0188661 RchiOBHm_Chr7g0212591
rosa_laevigata	RLG00000014285 RLG00000019737 RLG00000020231 RLG00000027687 RLG00000028530 RLG00000029679
rosa_multiflora	Rmu_sc0008577.1_g000011 Rmu_sc0010616.1_g000005 Rmu_ssc0000255.1_g000048
rosa_roxburghii	Rroxscaffold_1G00039250 Rroxscaffold_2G00087850 Rroxscaffold_3G00231610 Rroxscaffold_3G00276260 Rroxscaffold_3G00276270
rosa_rugosa	Rorug01G0345200.1 Rorug02G0070900 Rorug03G0279300
rosa_samantha	Rh1AG087400 Rh1AG177300 Rh1BG218300 Rh1CG085600 Rh1CG164600 Rh1CG231700 Rh1CG234900 Rh1DG092000 Rh1DG244700 Rh3AG293200 Rh3BG241800 Rh3CG102600 Rh3CG163100 Rh3CG278400 Rh3DG163700 Rh3DG208200 Rh4AG190800 Rh4DG072100 Rh5AG271800 Rh5BG011900 Rh5BG311500 Rh5CG245000 Rh5CG402400 Rh5DG009700 Rh5DG321700 Rh6BG065700 Rh6BG431400 Rh6CG449000 Rh6DG208800 Rh7AG267300 Rh7BG437400 Rh7CG285800 Rh7CG418900 Rh7CG450100 Rh7DG275300
rosa_wichuraiana	Rw0G005630 Rw0G009300 Rw0G023360 Rw1G017030 Rw1G017050 Rw4G035810 Rw6G031650 Rw7G008390 Rw7G022990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	35, 155, 176
AcsI	RAATTY	2 cut(s)	110, 375
AfaI	GTAC	1 cut(s)	86
AfiI	CCNNNNNNNGG	4 cut(s)	35, 155, 176, 288
AflIII	ACRYGT	1 cut(s)	218
AgsI	TTSAA	2 cut(s)	44, 296
AjnI	CCWGG	3 cut(s)	34, 97, 154
AluBI	AGCT	1 cut(s)	344
AluI	AGCT	1 cut(s)	344
AoxI	GGCC	1 cut(s)	104
ApoI	RAATTY	2 cut(s)	110, 375
AspLEI	GCGC	2 cut(s)	384, 420
AspS9I	GGNCC	2 cut(s)	14, 95
AsuHPI	GGTGA	1 cut(s)	291
AvaII	GGWCC	2 cut(s)	14, 95
BciT130I	CCWGG	3 cut(s)	36, 99, 156
BclI	TGATCA	1 cut(s)	337
BfaI	CTAG	1 cut(s)	90
BglII	AGATCT	1 cut(s)	410
Bme1390I	CCNGG	3 cut(s)	36, 99, 156
Bme18I	GGWCC	2 cut(s)	14, 95
BmgT120I	GGNCC	2 cut(s)	14, 95
BmiI	GGNNCC	1 cut(s)	160
BmrFI	CCNGG	3 cut(s)	36, 99, 156
BmsI	GCATC	1 cut(s)	218
BpuEI	CTTGAG	1 cut(s)	100
BsaBI	GATNNNNATC	1 cut(s)	357
BsaJI	CCNNGG	1 cut(s)	194
Bsc4I	CCNNNNNNNGG	4 cut(s)	35, 155, 176, 288
Bse8I	GATNNNNATC	1 cut(s)	357
BseBI	CCWGG	3 cut(s)	36, 99, 156
BseDI	CCNNGG	1 cut(s)	194
BseGI	GGATG	1 cut(s)	58
BseJI	GATNNNNATC	1 cut(s)	357
BseLI	CCNNNNNNNGG	4 cut(s)	35, 155, 176, 288
BseMII	CTCAG	2 cut(s)	174, 428
BsgI	GTGCAG	1 cut(s)	381
BshFI	GGCC	1 cut(s)	106
BslFI	GGGAC	1 cut(s)	265
BslI	CCNNNNNNNGG	4 cut(s)	35, 155, 176, 288
BsmFI	GGGAC	1 cut(s)	265
BsnI	GGCC	1 cut(s)	106
Bsp143I	GATC	2 cut(s)	337, 410
BspANI	GGCC	1 cut(s)	106
BspCNI	CTCAG	2 cut(s)	175, 427
BspLI	GGNNCC	1 cut(s)	160
BssECI	CCNNGG	1 cut(s)	194
BssMI	GATC	2 cut(s)	337, 410
BssT1I	CCWWGG	1 cut(s)	194
Bst2UI	CCWGG	3 cut(s)	36, 99, 156
Bst4CI	ACNGT	2 cut(s)	84, 279
Bst6I	CTCTTC	1 cut(s)	262
BstC8I	GCNNGC	2 cut(s)	6, 422
BstDEI	CTNAG	3 cut(s)	165, 183, 414
BstF5I	GGATG	1 cut(s)	58
BstHHI	GCGC	2 cut(s)	384, 420
BstKTI	GATC	2 cut(s)	340, 413
BstMBI	GATC	2 cut(s)	337, 410
BstNI	CCWGG	3 cut(s)	36, 99, 156
BstNSI	RCATGY	2 cut(s)	222, 335
BstSCI	CCNGG	3 cut(s)	34, 97, 154
BstX2I	RGATCY	1 cut(s)	410
BstYI	RGATCY	1 cut(s)	410
BsuRI	GGCC	1 cut(s)	106
BtsCI	GGATG	1 cut(s)	58
Cac8I	GCNNGC	2 cut(s)	6, 422
CfoI	GCGC	2 cut(s)	384, 420
Cfr13I	GGNCC	2 cut(s)	14, 95
Csp6I	GTAC	1 cut(s)	85
CviAII	CATG	4 cut(s)	219, 332, 350, 438
CviJI	RGCY	8 cut(s)	20, 106, 169, 200, 344, 392, 424, 436
CviKI_1	RGCY	8 cut(s)	20, 106, 169, 200, 344, 392, 424, 436
CviQI	GTAC	1 cut(s)	85
DdeI	CTNAG	3 cut(s)	165, 183, 414
DpnI	GATC	2 cut(s)	339, 412
DpnII	GATC	2 cut(s)	337, 410
Eam1104I	CTCTTC	1 cut(s)	262
EarI	CTCTTC	1 cut(s)	262
Eco130I	CCWWGG	1 cut(s)	194
Eco147I	AGGCCT	1 cut(s)	106
Eco47I	GGWCC	2 cut(s)	14, 95
EcoO109I	RGGNCCY	1 cut(s)	95
EcoRI	GAATTC	1 cut(s)	375
EcoRII	CCWGG	3 cut(s)	34, 97, 154
EcoT14I	CCWWGG	1 cut(s)	194
ErhI	CCWWGG	1 cut(s)	194
FaeI	CATG	4 cut(s)	222, 335, 353, 441
FaqI	GGGAC	1 cut(s)	265
FatI	CATG	4 cut(s)	218, 331, 349, 437
FauNDI	CATATG	1 cut(s)	10
FbaI	TGATCA	1 cut(s)	337
FokI	GGATG	1 cut(s)	65
FspBI	CTAG	1 cut(s)	90
GlaI	GCGC	2 cut(s)	383, 419
HaeIII	GGCC	1 cut(s)	106
HhaI	GCGC	2 cut(s)	384, 420
Hin1II	CATG	4 cut(s)	222, 335, 353, 441
Hin6I	GCGC	2 cut(s)	382, 418
HinP1I	GCGC	2 cut(s)	382, 418
HindIII	AAGCTT	1 cut(s)	342
HinfI	GANTC	1 cut(s)	296
HphI	GGTGA	1 cut(s)	291
Hpy166II	GTNNAC	2 cut(s)	87, 224
Hpy188III	TCNNGA	2 cut(s)	117, 177
Hpy8I	GTNNAC	2 cut(s)	87, 224
HpyAV	CCTTC	3 cut(s)	96, 183, 315
HpyCH4III	ACNGT	2 cut(s)	84, 279
HpyCH4V	TGCA	4 cut(s)	8, 263, 331, 398
HpyF3I	CTNAG	3 cut(s)	165, 183, 414
Hsp92II	CATG	4 cut(s)	222, 335, 353, 441
HspAI	GCGC	2 cut(s)	382, 418
Ksp22I	TGATCA	1 cut(s)	337
Kzo9I	GATC	2 cut(s)	337, 410
LweI	GCATC	1 cut(s)	218
MaeI	CTAG	1 cut(s)	90
MaeIII	GTNAC	1 cut(s)	189
MalI	GATC	2 cut(s)	339, 412
MboI	GATC	2 cut(s)	337, 410
MboII	GAAGA	2 cut(s)	56, 279
MflI	RGATCY	1 cut(s)	410
MluCI	AATT	6 cut(s)	30, 69, 110, 213, 375, 427
MnlI	CCTC	2 cut(s)	86, 162
MspR9I	CCNGG	3 cut(s)	36, 99, 156
MvaI	CCWGG	3 cut(s)	36, 99, 156
NdeI	CATATG	1 cut(s)	10
NdeII	GATC	2 cut(s)	337, 410
NlaIII	CATG	4 cut(s)	222, 335, 353, 441
NlaIV	GGNNCC	1 cut(s)	160
NspI	RCATGY	2 cut(s)	222, 335
PceI	AGGCCT	1 cut(s)	106
PciI	ACATGT	1 cut(s)	218
PfeI	GAWTC	1 cut(s)	296
PflMI	CCANNNNNTGG	3 cut(s)	35, 155, 176
PfoI	TCCNGGA	1 cut(s)	154
PpuMI	RGGWCCY	1 cut(s)	95
PscI	ACATGT	1 cut(s)	218
Psp5II	RGGWCCY	1 cut(s)	95
Psp6I	CCWGG	3 cut(s)	34, 97, 154
PspGI	CCWGG	3 cut(s)	34, 97, 154
PspN4I	GGNNCC	1 cut(s)	160
PspPI	GGNCC	2 cut(s)	14, 95
PspPPI	RGGWCCY	1 cut(s)	95
PsuI	RGATCY	1 cut(s)	410
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
Sau3AI	GATC	2 cut(s)	337, 410
Sau96I	GGNCC	2 cut(s)	14, 95
ScrFI	CCNGG	3 cut(s)	36, 99, 156
SetI	ASST	6 cut(s)	100, 154, 175, 307, 346, 370
SfaNI	GCATC	1 cut(s)	218
SinI	GGWCC	2 cut(s)	14, 95
SmlI	CTYRAG	1 cut(s)	115
SmoI	CTYRAG	1 cut(s)	115
Sse9I	AATT	6 cut(s)	30, 69, 110, 213, 375, 427
SseBI	AGGCCT	1 cut(s)	106
SspMI	CTAG	1 cut(s)	90
StuI	AGGCCT	1 cut(s)	106
StyD4I	CCNGG	3 cut(s)	34, 97, 154
StyI	CCWWGG	1 cut(s)	194
TaaI	ACNGT	2 cut(s)	84, 279
TaqI	TCGA	1 cut(s)	60
TasI	AATT	6 cut(s)	30, 69, 110, 213, 375, 427
TatI	WGTACW	1 cut(s)	84
TfiI	GAWTC	1 cut(s)	296
TspDTI	ATGAA	1 cut(s)	420
Van91I	CCANNNNNTGG	3 cut(s)	35, 155, 176
VpaK11BI	GGWCC	2 cut(s)	14, 95
XapI	RAATTY	2 cut(s)	110, 375
XceI	RCATGY	2 cut(s)	222, 335
XspI	CTAG	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.