Rh7BG437400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000691
Physical Location & Seq
Forward (+)
50340711 .. 50341582
872 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG437400.1

Sequence Viewer

Length: 357 bp
ATGGTGAAGACTTTCTGCCAATTAGGGATGAAAAAGAAGTTAAACAAATGTTGGCATTTGTTCAACGTTCCAGGGTGCTGCAATTATATATTATATGTTCAGCAAGATGGCAATGCAAATGATGAACATAGAATGCAGAATGCTCAGCAATGTGGCAATTCTAATGGACATAGTTCTGAAAATGTTCATGATGAGGAGCATCACTACATTCCATCTCAACAATCACTTGCGAAAGCACCTTTTGTTTCATCGCAACCACTTCCATCACCTCTAAATTTCTCAAGAAATTCCTCCAGTTCAAAGAAGTTCTCAACCTATTGGATCATTCTTAGCTTCCTTCTCCATGATGTACACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.5

Weight (kDa)

8.31

Isoelectric Point (pI)

58.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 66
AclWI GGATC 1 cut(s) 329
AcsI RAATTY 2 cut(s) 274, 286
AfaI GTAC 1 cut(s) 351
AgsI TTSAA 2 cut(s) 64, 300
AjnI CCWGG 1 cut(s) 70
AluBI AGCT 1 cut(s) 333
AluI AGCT 1 cut(s) 333
AlwI GGATC 1 cut(s) 329
ApeKI GCWGC 1 cut(s) 78
ApoI RAATTY 2 cut(s) 274, 286
Asp700I GAANNNNTTC 2 cut(s) 11, 183
AsuHPI GGTGA 2 cut(s) 16, 258
BbsI GAAGAC 1 cut(s) 14
BbvI GCAGC 1 cut(s) 65
BccI CCATC 3 cut(s) 101, 220, 271
BciT130I CCWGG 1 cut(s) 72
BisI GCNGC 1 cut(s) 79
BlpI GCTNAGC 1 cut(s) 144
BlsI GCNGC 1 cut(s) 80
Bme1390I CCNGG 1 cut(s) 72
BmrFI CCNGG 1 cut(s) 72
BmsI GCATC 1 cut(s) 208
BpiI GAAGAC 1 cut(s) 14
BpmI CTGGAG 1 cut(s) 277
Bpu1102I GCTNAGC 1 cut(s) 144
BpuEI CTTGAG 1 cut(s) 265
BsaJI CCNNGG 1 cut(s) 71
Bse1I ACTGG 1 cut(s) 294
Bse3DI GCAATG 2 cut(s) 118, 155
BseBI CCWGG 1 cut(s) 72
BseDI CCNNGG 1 cut(s) 71
BseGI GGATG 1 cut(s) 33
BseMI GCAATG 2 cut(s) 118, 155
BseMII CTCAG 1 cut(s) 158
BseNI ACTGG 1 cut(s) 294
BseRI GAGGAG 1 cut(s) 209
BseXI GCAGC 1 cut(s) 65
BsmI GAATGC 2 cut(s) 138, 145
Bsp1407I TGTACA 1 cut(s) 349
Bsp143I GATC 1 cut(s) 321
Bsp1720I GCTNAGC 1 cut(s) 144
BspCNI CTCAG 1 cut(s) 157
BspHI TCATGA 1 cut(s) 187
BspPI GGATC 1 cut(s) 329
BsrDI GCAATG 2 cut(s) 118, 155
BsrGI TGTACA 1 cut(s) 349
BsrI ACTGG 1 cut(s) 294
BssECI CCNNGG 1 cut(s) 71
BssMI GATC 1 cut(s) 321
Bst2UI CCWGG 1 cut(s) 72
BstAUI TGTACA 1 cut(s) 349
BstDEI CTNAG 2 cut(s) 144, 329
BstF5I GGATG 1 cut(s) 33
BstKTI GATC 1 cut(s) 324
BstMBI GATC 1 cut(s) 321
BstNI CCWGG 1 cut(s) 72
BstSCI CCNGG 1 cut(s) 70
BstV1I GCAGC 1 cut(s) 65
BstV2I GAAGAC 1 cut(s) 14
BtgZI GCGATG 1 cut(s) 234
BtsCI GGATG 1 cut(s) 33
BtsIMutI CAGTG 1 cut(s) 352
CciI TCATGA 1 cut(s) 187
Csp6I GTAC 1 cut(s) 350
CviAII CATG 2 cut(s) 188, 344
CviJI RGCY 1 cut(s) 333
CviKI_1 RGCY 1 cut(s) 333
CviQI GTAC 1 cut(s) 350
DdeI CTNAG 2 cut(s) 144, 329
DpnI GATC 1 cut(s) 323
DpnII GATC 1 cut(s) 321
EcoRII CCWGG 1 cut(s) 70
FaeI CATG 2 cut(s) 191, 347
FaiI YATR 8 cut(s) 87, 89, 94, 96, 129, 171, 189, 345
FatI CATG 2 cut(s) 187, 343
Fnu4HI GCNGC 1 cut(s) 79
FokI GGATG 1 cut(s) 40
Fsp4HI GCNGC 1 cut(s) 79
GluI GCNGC 1 cut(s) 79
GsuI CTGGAG 1 cut(s) 277
Hin1II CATG 2 cut(s) 191, 347
HphI GGTGA 2 cut(s) 16, 258
Hpy166II GTNNAC 1 cut(s) 352
Hpy188I TCNGA 1 cut(s) 178
Hpy188III TCNNGA 2 cut(s) 188, 282
Hpy8I GTNNAC 1 cut(s) 352
HpyAV CCTTC 1 cut(s) 347
HpyCH4IV ACGT 1 cut(s) 66
HpyCH4V TGCA 3 cut(s) 81, 116, 136
HpyF3I CTNAG 2 cut(s) 144, 329
HpySE526I ACGT 1 cut(s) 66
Hsp92II CATG 2 cut(s) 191, 347
Kzo9I GATC 1 cut(s) 321
LmnI GCTCC 1 cut(s) 196
LpnPI CCDG 3 cut(s) 57, 84, 307
Lsp1109I GCAGC 1 cut(s) 65
LweI GCATC 1 cut(s) 208
MaeII ACGT 1 cut(s) 66
MalI GATC 1 cut(s) 323
MboI GATC 1 cut(s) 321
MboII GAAGA 1 cut(s) 19
MluCI AATT 5 cut(s) 20, 82, 157, 274, 286
MnlI CCTC 3 cut(s) 187, 279, 301
MroXI GAANNNNTTC 2 cut(s) 11, 183
MseI TTAA 1 cut(s) 41
MspR9I CCNGG 1 cut(s) 72
Mva1269I GAATGC 2 cut(s) 138, 145
MvaI CCWGG 1 cut(s) 72
NdeII GATC 1 cut(s) 321
NlaIII CATG 2 cut(s) 191, 347
PagI TCATGA 1 cut(s) 187
PctI GAATGC 2 cut(s) 138, 145
PdmI GAANNNNTTC 2 cut(s) 11, 183
PkrI GCNGC 1 cut(s) 80
Psp1406I AACGTT 1 cut(s) 66
Psp6I CCWGG 1 cut(s) 70
PspGI CCWGG 1 cut(s) 70
RsaI GTAC 1 cut(s) 351
RsaNI GTAC 1 cut(s) 350
SaqAI TTAA 1 cut(s) 41
SatI GCNGC 1 cut(s) 79
Sau3AI GATC 1 cut(s) 321
ScrFI CCNGG 1 cut(s) 72
SetI ASST 5 cut(s) 69, 241, 271, 317, 335
SfaNI GCATC 1 cut(s) 208
SgeI CNNG 7 cut(s) 83, 84, 116, 200, 239, 294, 306
SmlI CTYRAG 1 cut(s) 280
SmoI CTYRAG 1 cut(s) 280
Sse9I AATT 5 cut(s) 20, 82, 157, 274, 286
StyD4I CCNGG 1 cut(s) 70
TaiI ACGT 1 cut(s) 69
TasI AATT 5 cut(s) 20, 82, 157, 274, 286
TatI WGTACW 1 cut(s) 349
Tru1I TTAA 1 cut(s) 41
Tru9I TTAA 1 cut(s) 41
TseI GCWGC 1 cut(s) 78
TspDTI ATGAA 4 cut(s) 44, 138, 176, 237
XapI RAATTY 2 cut(s) 274, 286
XmnI GAANNNNTTC 2 cut(s) 11, 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.