Rh1DG092000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000691
Physical Location & Seq
Forward (+)
17290166 .. 17290813
648 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG092000.1

Sequence Viewer

Length: 447 bp
ATGGCCATAATAAGAGGACGTGTTCAAGGAGACAGCAACAAGGCAATGATTCCCAAGCTGGGGTTCAACCGTCAGAAACTGATGATCAGAGTGTCCATGTGGAGCAAGCTGAAAATGCTTAAAGTGATGTGCAATTTGAAAGTGATATGCATTATGGATCAGTGCAACAAACTGCAAATGTTAGTACCAACACCCTCAATTGTTGCAAGTGCTTCATCTCAACCGATGATCTCATCACCACCTCTACCTCAGTCTTCTTTGCAGCCCACTGTTATCGGATCATCTCATACGTCCAAGACATTTGTATGTCCTAAGACAGAGATGCCATTCAAGACCAAGTCAATAGCACATAAGCCTAAGCCTAAACTTGTGATAGGAACAAGCACTAAAGCAAGAGCCCAACAAGAACCAAAGGAGGGTTCCAACAAGAAAATTTGGAAGCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

16.39

Weight (kDa)

10.48

Isoelectric Point (pI)

46.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 165, 286
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 432
AfaI GTAC 1 cut(s) 186
AfiI CCNNNNNNNGG 3 cut(s) 59, 60, 416
AflIII ACRYGT 1 cut(s) 19
AgsI TTSAA 4 cut(s) 26, 67, 139, 331
AjiI CACGTC 1 cut(s) 20
AjuI GAANNNNNNNTTGG 4 cut(s) 47, 79, 403, 435
AluBI AGCT 2 cut(s) 58, 109
AluI AGCT 2 cut(s) 58, 109
Alw26I GTCTC 1 cut(s) 24
AlwI GGATC 2 cut(s) 165, 286
AlwNI CAGNNNCTG 1 cut(s) 79
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 262
ApoI RAATTY 1 cut(s) 432
AsuHPI GGTGA 1 cut(s) 228
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 400
BbsI GAAGAC 1 cut(s) 246
BbvI GCAGC 1 cut(s) 274
BceAI ACGGC 1 cut(s) 427
BclI TGATCA 1 cut(s) 84
BcoDI GTCTC 1 cut(s) 24
BisI GCNGC 1 cut(s) 263
BlsI GCNGC 1 cut(s) 264
BmgBI CACGTC 1 cut(s) 20
BmiI GGNNCC 1 cut(s) 421
BmsI GCATC 1 cut(s) 312
BpiI GAAGAC 1 cut(s) 246
Bpu10I CCTNAGC 1 cut(s) 357
Bsc4I CCNNNNNNNGG 3 cut(s) 59, 60, 416
Bse3DI GCAATG 1 cut(s) 51
BseLI CCNNNNNNNGG 3 cut(s) 59, 60, 416
BseMI GCAATG 1 cut(s) 51
BseMII CTCAG 1 cut(s) 263
BseXI GCAGC 1 cut(s) 274
BseYI CCCAGC 1 cut(s) 58
BshFI GGCC 1 cut(s) 5
BslI CCNNNNNNNGG 3 cut(s) 59, 60, 416
BsmAI GTCTC 1 cut(s) 24
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 400
Bsp143I GATC 4 cut(s) 84, 157, 228, 278
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 262
BspLI GGNNCC 1 cut(s) 421
BspPI GGATC 2 cut(s) 165, 286
BsrDI GCAATG 1 cut(s) 51
BssMI GATC 4 cut(s) 84, 157, 228, 278
Bst4CI ACNGT 2 cut(s) 71, 271
BstC8I GCNNGC 1 cut(s) 107
BstDEI CTNAG 3 cut(s) 249, 312, 357
BstKTI GATC 4 cut(s) 87, 160, 231, 281
BstMAI GTCTC 1 cut(s) 24
BstMBI GATC 4 cut(s) 84, 157, 228, 278
BstMWI GCNNNNNNNGC 1 cut(s) 115
BstV1I GCAGC 1 cut(s) 274
BstV2I GAAGAC 1 cut(s) 246
BsuRI GGCC 1 cut(s) 5
BtrI CACGTC 1 cut(s) 20
BtsIMutI CAGTG 2 cut(s) 167, 267
Cac8I GCNNGC 1 cut(s) 107
CaiI CAGNNNCTG 1 cut(s) 79
Csp6I GTAC 1 cut(s) 185
CviAII CATG 1 cut(s) 97
CviJI RGCY 8 cut(s) 5, 58, 109, 265, 355, 361, 398, 442
CviKI_1 RGCY 8 cut(s) 5, 58, 109, 265, 355, 361, 398, 442
CviQI GTAC 1 cut(s) 185
DdeI CTNAG 3 cut(s) 249, 312, 357
DpnI GATC 4 cut(s) 86, 159, 230, 280
DpnII GATC 4 cut(s) 84, 157, 228, 278
EaeI YGGCCR 1 cut(s) 3
Eco24I GRGCYC 1 cut(s) 400
EcoT22I ATGCAT 1 cut(s) 152
EcoT38I GRGCYC 1 cut(s) 400
FaeI CATG 1 cut(s) 100
FaiI YATR 7 cut(s) 8, 98, 148, 155, 288, 307, 351
FatI CATG 1 cut(s) 96
FbaI TGATCA 1 cut(s) 84
Fnu4HI GCNGC 1 cut(s) 263
FriOI GRGCYC 1 cut(s) 400
Fsp4HI GCNGC 1 cut(s) 263
GluI GCNGC 1 cut(s) 263
GsaI CCCAGC 1 cut(s) 62
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 1 cut(s) 100
HinfI GANTC 1 cut(s) 49
HphI GGTGA 1 cut(s) 228
Hpy188I TCNGA 3 cut(s) 75, 89, 278
Hpy188III TCNNGA 1 cut(s) 331
HpyCH4III ACNGT 2 cut(s) 71, 271
HpyCH4IV ACGT 2 cut(s) 19, 290
HpyCH4V TGCA 6 cut(s) 132, 150, 165, 175, 206, 262
HpyF10VI GCNNNNNNNGC 1 cut(s) 115
HpyF3I CTNAG 3 cut(s) 249, 312, 357
HpySE526I ACGT 2 cut(s) 19, 290
Hsp92II CATG 1 cut(s) 100
Ksp22I TGATCA 1 cut(s) 84
Kzo9I GATC 4 cut(s) 84, 157, 228, 278
LmnI GCTCC 1 cut(s) 102
LpnPI CCDG 1 cut(s) 44
Lsp1109I GCAGC 1 cut(s) 274
LweI GCATC 1 cut(s) 312
MaeII ACGT 2 cut(s) 19, 290
MalI GATC 4 cut(s) 86, 159, 230, 280
MboI GATC 4 cut(s) 84, 157, 228, 278
MboII GAAGA 1 cut(s) 246
MfeI CAATTG 1 cut(s) 198
MhlI GDGCHC 1 cut(s) 400
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 133, 198, 432
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 447
MnlI CCTC 5 cut(s) 8, 205, 252, 258, 409
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 152
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 120
MslI CAYNNNNRTG 1 cut(s) 304
Msp20I TGGCCA 1 cut(s) 5
MunI CAATTG 1 cut(s) 198
MwoI GCNNNNNNNGC 1 cut(s) 115
NdeII GATC 4 cut(s) 84, 157, 228, 278
NlaIII CATG 1 cut(s) 100
NlaIV GGNNCC 1 cut(s) 421
NsiI ATGCAT 1 cut(s) 152
PfeI GAWTC 1 cut(s) 49
PflFI GACNNNGTC 1 cut(s) 337
PkrI GCNGC 1 cut(s) 264
PspFI CCCAGC 1 cut(s) 58
PspN4I GGNNCC 1 cut(s) 421
PstNI CAGNNNCTG 1 cut(s) 79
PsyI GACNNNGTC 1 cut(s) 337
RsaI GTAC 1 cut(s) 186
RsaNI GTAC 1 cut(s) 185
RseI CAYNNNNRTG 1 cut(s) 304
SaqAI TTAA 1 cut(s) 120
SatI GCNGC 1 cut(s) 263
Sau3AI GATC 4 cut(s) 84, 157, 228, 278
SduI GDGCHC 1 cut(s) 400
SetI ASST 6 cut(s) 22, 60, 111, 244, 250, 293
SfaNI GCATC 1 cut(s) 312
SmiMI CAYNNNNRTG 1 cut(s) 304
Sse9I AATT 3 cut(s) 133, 198, 432
TaaI ACNGT 2 cut(s) 71, 271
TaiI ACGT 2 cut(s) 22, 293
TasI AATT 3 cut(s) 133, 198, 432
TfiI GAWTC 1 cut(s) 49
Tru1I TTAA 1 cut(s) 120
Tru9I TTAA 1 cut(s) 120
TscAI CASTG 2 cut(s) 167, 274
TseI GCWGC 1 cut(s) 262
TspDTI ATGAA 1 cut(s) 204
TspRI CASTG 2 cut(s) 167, 274
Tth111I GACNNNGTC 1 cut(s) 337
XapI RAATTY 1 cut(s) 432
Zsp2I ATGCAT 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.