RLG00000029679

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000691
Physical Location & Seq
Reverse (-)
42913917 .. 42914590
674 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029679

Sequence Viewer

Length: 438 bp
ATGATGGCCATAATAAGAGGACTTGTTCAAGGAGACAACAACAAGGCAATGATTCCCAAGCTGGGTGTCCATGTGGAGCAAGTTGAAAATGTTCAAAGTGATGTGCAAGTTGAAAGTGATATGCATTCTCGATTAGTGCAGCAAACTGCAAATGTACCAACACCCTCAATTGTTGCAAGTGCTTCATCTCAACCAATGATCTCATCACCACCTCTGACTCAAGTTGACCTTCTACCTCAGTCTTCTTCGCAGCCCACTGTTATCAGATCATCTCATACGTCTAAGACATTTGTATGTCCAAAGATAGGGATGTCATTTAAGACCAAGTCAATAGCACAAAAGCCTAAGCCTAAACCAGCTGTGACAGGAACAAGCACTAAAGCAAGAGCCCAACAAGGACCAAAGGTGGGTTCCAACAAGAAAATTTGGAAGTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

15.54

Weight (kDa)

10.25

Isoelectric Point (pI)

48.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 6
AcsI RAATTY 1 cut(s) 423
AfaI GTAC 1 cut(s) 156
AfiI CCNNNNNNNGG 3 cut(s) 62, 305, 407
AgsI TTSAA 4 cut(s) 29, 86, 95, 113
AjuI GAANNNNNNNTTGG 2 cut(s) 394, 426
AluBI AGCT 2 cut(s) 61, 359
AluI AGCT 2 cut(s) 61, 359
Alw26I GTCTC 1 cut(s) 27
AoxI GGCC 1 cut(s) 6
ApeKI GCWGC 2 cut(s) 139, 250
ApoI RAATTY 1 cut(s) 423
Asp700I GAANNNNTTC 1 cut(s) 90
AspS9I GGNCC 1 cut(s) 398
AsuHPI GGTGA 1 cut(s) 198
AvaII GGWCC 1 cut(s) 398
BalI TGGCCA 1 cut(s) 8
BanII GRGCYC 1 cut(s) 391
BbsI GAAGAC 1 cut(s) 234
BbvI GCAGC 2 cut(s) 151, 262
BcoDI GTCTC 1 cut(s) 27
BisI GCNGC 2 cut(s) 140, 251
BlsI GCNGC 2 cut(s) 141, 252
Bme18I GGWCC 1 cut(s) 398
BmgT120I GGNCC 1 cut(s) 398
BmiI GGNNCC 1 cut(s) 412
BpiI GAAGAC 1 cut(s) 234
Bpu10I CCTNAGC 1 cut(s) 345
BpuEI CTTGAG 1 cut(s) 204
Bsc4I CCNNNNNNNGG 3 cut(s) 62, 305, 407
Bse3DI GCAATG 1 cut(s) 54
BseGI GGATG 1 cut(s) 315
BseLI CCNNNNNNNGG 3 cut(s) 62, 305, 407
BseMI GCAATG 1 cut(s) 54
BseMII CTCAG 1 cut(s) 251
BseXI GCAGC 2 cut(s) 151, 262
BseYI CCCAGC 1 cut(s) 61
BsgI GTGCAG 1 cut(s) 158
BshFI GGCC 1 cut(s) 8
BslI CCNNNNNNNGG 3 cut(s) 62, 305, 407
BsmAI GTCTC 1 cut(s) 27
BsmI GAATGC 1 cut(s) 124
BsnI GGCC 1 cut(s) 8
Bsp1286I GDGCHC 1 cut(s) 391
Bsp143I GATC 2 cut(s) 198, 266
BspANI GGCC 1 cut(s) 8
BspCNI CTCAG 1 cut(s) 250
BspLI GGNNCC 1 cut(s) 412
BsrDI GCAATG 1 cut(s) 54
BssMI GATC 2 cut(s) 198, 266
Bst4CI ACNGT 1 cut(s) 259
BstDEI CTNAG 3 cut(s) 237, 282, 345
BstF5I GGATG 1 cut(s) 315
BstKTI GATC 2 cut(s) 201, 269
BstMAI GTCTC 1 cut(s) 27
BstMBI GATC 2 cut(s) 198, 266
BstV1I GCAGC 2 cut(s) 151, 262
BstV2I GAAGAC 1 cut(s) 234
BsuRI GGCC 1 cut(s) 8
BtsCI GGATG 1 cut(s) 315
BtsIMutI CAGTG 1 cut(s) 255
Cfr13I GGNCC 1 cut(s) 398
Csp6I GTAC 1 cut(s) 155
CviAII CATG 1 cut(s) 71
CviJI RGCY 7 cut(s) 8, 61, 253, 343, 349, 359, 389
CviKI_1 RGCY 7 cut(s) 8, 61, 253, 343, 349, 359, 389
CviQI GTAC 1 cut(s) 155
DdeI CTNAG 3 cut(s) 237, 282, 345
DpnI GATC 2 cut(s) 200, 268
DpnII GATC 2 cut(s) 198, 266
EaeI YGGCCR 1 cut(s) 6
Eco24I GRGCYC 1 cut(s) 391
Eco47I GGWCC 1 cut(s) 398
EcoT22I ATGCAT 1 cut(s) 126
EcoT38I GRGCYC 1 cut(s) 391
FaeI CATG 1 cut(s) 74
FaiI YATR 5 cut(s) 11, 72, 122, 276, 295
FalI AAGNNNNNCTT 2 cut(s) 213, 245
FatI CATG 1 cut(s) 70
Fnu4HI GCNGC 2 cut(s) 140, 251
FokI GGATG 1 cut(s) 322
FriOI GRGCYC 1 cut(s) 391
Fsp4HI GCNGC 2 cut(s) 140, 251
GluI GCNGC 2 cut(s) 140, 251
GsaI CCCAGC 1 cut(s) 65
HaeIII GGCC 1 cut(s) 8
Hin1II CATG 1 cut(s) 74
HincII GTYRAC 1 cut(s) 226
HindII GTYRAC 1 cut(s) 226
HinfI GANTC 2 cut(s) 52, 217
HphI GGTGA 1 cut(s) 198
Hpy166II GTNNAC 1 cut(s) 226
Hpy188I TCNGA 2 cut(s) 216, 266
Hpy188III TCNNGA 2 cut(s) 129, 435
Hpy8I GTNNAC 1 cut(s) 226
HpyAV CCTTC 1 cut(s) 239
HpyCH4III ACNGT 1 cut(s) 259
HpyCH4IV ACGT 1 cut(s) 278
HpyCH4V TGCA 5 cut(s) 106, 124, 139, 149, 176
HpyF3I CTNAG 3 cut(s) 237, 282, 345
HpySE526I ACGT 1 cut(s) 278
Hsp92II CATG 1 cut(s) 74
Kzo9I GATC 2 cut(s) 198, 266
LmnI GCTCC 1 cut(s) 76
LpnPI CCDG 3 cut(s) 47, 351, 369
Lsp1109I GCAGC 2 cut(s) 151, 262
MaeII ACGT 1 cut(s) 278
MaeIII GTNAC 1 cut(s) 361
MalI GATC 2 cut(s) 200, 268
MboI GATC 2 cut(s) 198, 266
MboII GAAGA 2 cut(s) 234, 237
MfeI CAATTG 1 cut(s) 168
MhlI GDGCHC 1 cut(s) 391
MlsI TGGCCA 1 cut(s) 8
MluCI AATT 2 cut(s) 168, 423
MluNI TGGCCA 1 cut(s) 8
MlyI GAGTC 1 cut(s) 211
MmeI TCCRAC 1 cut(s) 438
MnlI CCTC 4 cut(s) 11, 175, 222, 246
Mox20I TGGCCA 1 cut(s) 8
Mph1103I ATGCAT 1 cut(s) 126
MroXI GAANNNNTTC 1 cut(s) 90
MscI TGGCCA 1 cut(s) 8
MseI TTAA 1 cut(s) 318
MslI CAYNNNNRTG 1 cut(s) 292
Msp20I TGGCCA 1 cut(s) 8
MspA1I CMGCKG 1 cut(s) 359
MunI CAATTG 1 cut(s) 168
Mva1269I GAATGC 1 cut(s) 124
NdeII GATC 2 cut(s) 198, 266
NlaIII CATG 1 cut(s) 74
NlaIV GGNNCC 1 cut(s) 412
NmuCI GTSAC 1 cut(s) 361
NsiI ATGCAT 1 cut(s) 126
PctI GAATGC 1 cut(s) 124
PdmI GAANNNNTTC 1 cut(s) 90
PfeI GAWTC 1 cut(s) 52
PflFI GACNNNGTC 1 cut(s) 325
PkrI GCNGC 2 cut(s) 141, 252
PleI GAGTC 1 cut(s) 211
PpsI GAGTC 1 cut(s) 211
PspFI CCCAGC 1 cut(s) 61
PspN4I GGNNCC 1 cut(s) 412
PspPI GGNCC 1 cut(s) 398
PsyI GACNNNGTC 1 cut(s) 325
PvuII CAGCTG 1 cut(s) 359
RsaI GTAC 1 cut(s) 156
RsaNI GTAC 1 cut(s) 155
RseI CAYNNNNRTG 1 cut(s) 292
SaqAI TTAA 1 cut(s) 318
SatI GCNGC 2 cut(s) 140, 251
Sau3AI GATC 2 cut(s) 198, 266
Sau96I GGNCC 1 cut(s) 398
SchI GAGTC 1 cut(s) 211
SduI GDGCHC 1 cut(s) 391
SetI ASST 7 cut(s) 63, 214, 231, 238, 281, 361, 408
SinI GGWCC 1 cut(s) 398
SmiMI CAYNNNNRTG 1 cut(s) 292
SmlI CTYRAG 1 cut(s) 219
SmoI CTYRAG 1 cut(s) 219
Sse9I AATT 2 cut(s) 168, 423
TaaI ACNGT 1 cut(s) 259
TaiI ACGT 1 cut(s) 281
TaqI TCGA 1 cut(s) 130
TasI AATT 2 cut(s) 168, 423
TfiI GAWTC 1 cut(s) 52
Tru1I TTAA 1 cut(s) 318
Tru9I TTAA 1 cut(s) 318
TscAI CASTG 1 cut(s) 262
TseFI GTSAC 1 cut(s) 361
TseI GCWGC 2 cut(s) 139, 250
Tsp45I GTSAC 1 cut(s) 361
TspDTI ATGAA 1 cut(s) 174
TspRI CASTG 1 cut(s) 262
Tth111I GACNNNGTC 1 cut(s) 325
VpaK11BI GGWCC 1 cut(s) 398
XapI RAATTY 1 cut(s) 423
XmnI GAANNNNTTC 1 cut(s) 90
Zsp2I ATGCAT 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.