Rh3DG208200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000691
Physical Location & Seq
Forward (+)
19152908 .. 19153373
466 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG208200.1

Sequence Viewer

Length: 309 bp
ATGTTCAAAGTGATGCATGTGCAAGTTGAAAGTGAAATGCATTCTAGATCAGTGCAGCAAACTTCAAATGTACCAACACCCTCAATTGTTGCAAGTGCTTCATCTCAACCAATGATCTCATCACCACCTCTGACTCAAGTTAACCTTCTACCTCAGTCTTCTTCGCAGCCCAATGTTGTTGGATCATCTCCTCTTGCTTCCAAAACATTTGTATGTCCTAAGATAGGGATGTCAATCAAGACCAAGTCAATAGCACATAAGCCTAAGCCTAAACCTGTGACAAGAACAAGCACTAAAGCAAGAGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

10.88

Weight (kDa)

10.82

Isoelectric Point (pI)

71.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 190
AfaI GTAC 1 cut(s) 72
AfiI CCNNNNNNNGG 1 cut(s) 224
AgsI TTSAA 3 cut(s) 7, 29, 66
AlwI GGATC 1 cut(s) 190
ApeKI GCWGC 2 cut(s) 55, 166
AsuHPI GGTGA 1 cut(s) 114
BbsI GAAGAC 1 cut(s) 150
BbvI GCAGC 2 cut(s) 67, 178
BfaI CTAG 1 cut(s) 45
BisI GCNGC 2 cut(s) 56, 167
BlsI GCNGC 2 cut(s) 57, 168
BmsI GCATC 1 cut(s) 3
BpiI GAAGAC 1 cut(s) 150
Bpu10I CCTNAGC 1 cut(s) 264
BpuEI CTTGAG 1 cut(s) 120
BsaBI GATNNNNATC 1 cut(s) 233
Bsc4I CCNNNNNNNGG 1 cut(s) 224
Bse8I GATNNNNATC 1 cut(s) 233
BseGI GGATG 1 cut(s) 234
BseJI GATNNNNATC 1 cut(s) 233
BseLI CCNNNNNNNGG 1 cut(s) 224
BseMII CTCAG 1 cut(s) 167
BseRI GAGGAG 1 cut(s) 180
BseXI GCAGC 2 cut(s) 67, 178
BsgI GTGCAG 1 cut(s) 74
BslI CCNNNNNNNGG 1 cut(s) 224
BsmI GAATGC 1 cut(s) 40
Bsp143I GATC 3 cut(s) 47, 114, 182
BspCNI CTCAG 1 cut(s) 166
BspPI GGATC 1 cut(s) 190
BssMI GATC 3 cut(s) 47, 114, 182
BstDEI CTNAG 3 cut(s) 153, 219, 264
BstENI CCTNNNNNAGG 1 cut(s) 222
BstF5I GGATG 1 cut(s) 234
BstKTI GATC 3 cut(s) 50, 117, 185
BstMBI GATC 3 cut(s) 47, 114, 182
BstNSI RCATGY 1 cut(s) 20
BstV1I GCAGC 2 cut(s) 67, 178
BstV2I GAAGAC 1 cut(s) 150
BtsCI GGATG 1 cut(s) 234
BtsIMutI CAGTG 1 cut(s) 57
Csp6I GTAC 1 cut(s) 71
CviAII CATG 1 cut(s) 17
CviJI RGCY 4 cut(s) 169, 262, 268, 305
CviKI_1 RGCY 4 cut(s) 169, 262, 268, 305
CviQI GTAC 1 cut(s) 71
DdeI CTNAG 3 cut(s) 153, 219, 264
DpnI GATC 3 cut(s) 49, 116, 184
DpnII GATC 3 cut(s) 47, 114, 182
EcoNI CCTNNNNNAGG 1 cut(s) 222
EcoT22I ATGCAT 2 cut(s) 18, 42
FaeI CATG 1 cut(s) 20
FaiI YATR 3 cut(s) 18, 214, 258
FalI AAGNNNNNCTT 2 cut(s) 129, 161
FatI CATG 1 cut(s) 16
Fnu4HI GCNGC 2 cut(s) 56, 167
FokI GGATG 1 cut(s) 241
Fsp4HI GCNGC 2 cut(s) 56, 167
FspBI CTAG 1 cut(s) 45
GluI GCNGC 2 cut(s) 56, 167
Hin1II CATG 1 cut(s) 20
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
HinfI GANTC 1 cut(s) 133
HpaI GTTAAC 1 cut(s) 142
HphI GGTGA 1 cut(s) 114
Hpy166II GTNNAC 1 cut(s) 142
Hpy188I TCNGA 1 cut(s) 132
Hpy188III TCNNGA 2 cut(s) 45, 238
Hpy8I GTNNAC 1 cut(s) 142
HpyAV CCTTC 1 cut(s) 155
HpyCH4V TGCA 5 cut(s) 16, 22, 40, 55, 92
HpyF3I CTNAG 3 cut(s) 153, 219, 264
Hsp92II CATG 1 cut(s) 20
KspAI GTTAAC 1 cut(s) 142
Kzo9I GATC 3 cut(s) 47, 114, 182
LpnPI CCDG 1 cut(s) 288
Lsp1109I GCAGC 2 cut(s) 67, 178
LweI GCATC 1 cut(s) 3
MaeI CTAG 1 cut(s) 45
MaeIII GTNAC 1 cut(s) 277
MalI GATC 3 cut(s) 49, 116, 184
MboI GATC 3 cut(s) 47, 114, 182
MboII GAAGA 2 cut(s) 150, 153
MfeI CAATTG 1 cut(s) 84
MluCI AATT 1 cut(s) 84
MlyI GAGTC 1 cut(s) 127
MmeI TCCRAC 1 cut(s) 160
MnlI CCTC 4 cut(s) 91, 138, 162, 201
Mph1103I ATGCAT 2 cut(s) 18, 42
MseI TTAA 1 cut(s) 141
MslI CAYNNNNRTG 1 cut(s) 211
MunI CAATTG 1 cut(s) 84
Mva1269I GAATGC 1 cut(s) 40
NdeII GATC 3 cut(s) 47, 114, 182
NlaIII CATG 1 cut(s) 20
NmuCI GTSAC 1 cut(s) 277
NsiI ATGCAT 2 cut(s) 18, 42
NspI RCATGY 1 cut(s) 20
PctI GAATGC 1 cut(s) 40
PflFI GACNNNGTC 1 cut(s) 244
PkrI GCNGC 2 cut(s) 57, 168
PleI GAGTC 1 cut(s) 127
PpsI GAGTC 1 cut(s) 127
PsyI GACNNNGTC 1 cut(s) 244
RsaI GTAC 1 cut(s) 72
RsaNI GTAC 1 cut(s) 71
RseI CAYNNNNRTG 1 cut(s) 211
SaqAI TTAA 1 cut(s) 141
SatI GCNGC 2 cut(s) 56, 167
Sau3AI GATC 3 cut(s) 47, 114, 182
SchI GAGTC 1 cut(s) 127
SetI ASST 4 cut(s) 130, 147, 154, 277
SfaNI GCATC 1 cut(s) 3
SmiMI CAYNNNNRTG 1 cut(s) 211
SmlI CTYRAG 1 cut(s) 135
SmoI CTYRAG 1 cut(s) 135
Sse9I AATT 1 cut(s) 84
SspMI CTAG 1 cut(s) 45
TasI AATT 1 cut(s) 84
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TscAI CASTG 1 cut(s) 57
TseFI GTSAC 1 cut(s) 277
TseI GCWGC 2 cut(s) 55, 166
Tsp45I GTSAC 1 cut(s) 277
TspDTI ATGAA 1 cut(s) 90
TspRI CASTG 1 cut(s) 57
Tth111I GACNNNGTC 1 cut(s) 244
XagI CCTNNNNNAGG 1 cut(s) 222
XbaI TCTAGA 1 cut(s) 44
XceI RCATGY 1 cut(s) 20
XspI CTAG 1 cut(s) 45
Zsp2I ATGCAT 2 cut(s) 18, 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.