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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1184 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1254 |
| Acc36I | ACCTGC | 2 cut(s) | 864, 1232 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 1373, 1493, 1514 |
| AccI | GTMKAC | 2 cut(s) | 505, 1483 |
| AccIII | TCCGGA | 1 cut(s) | 316 |
| AciI | CCGC | 1 cut(s) | 60 |
| AclWI | GGATC | 3 cut(s) | 683, 790, 1906 |
| AcsI | RAATTY | 9 cut(s) | 99, 197, 720, 838, 937, 945, 1146, 1448, 1965 |
| AcuI | CTGAAG | 2 cut(s) | 651, 1313 |
| AfaI | GTAC | 5 cut(s) | 367, 598, 1112, 1222, 1424 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 974, 1373, 1493, 1514, 1626 |
| AflIII | ACRYGT | 1 cut(s) | 1556 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1001 |
| AjnI | CCWGG | 2 cut(s) | 1435, 1492 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1111, 1143 |
| AluBI | AGCT | 6 cut(s) | 187, 452, 578, 933, 1682, 1811 |
| AluI | AGCT | 6 cut(s) | 187, 452, 578, 933, 1682, 1811 |
| Alw21I | GWGCWC | 1 cut(s) | 827 |
| Alw26I | GTCTC | 2 cut(s) | 988, 1168 |
| AlwI | GGATC | 3 cut(s) | 683, 790, 1906 |
| Aor13HI | TCCGGA | 1 cut(s) | 316 |
| AoxI | GGCC | 6 cut(s) | 291, 339, 564, 1288, 1317, 1442 |
| ApaI | GGGCCC | 1 cut(s) | 295 |
| ApeKI | GCWGC | 3 cut(s) | 578, 635, 1822 |
| ApoI | RAATTY | 9 cut(s) | 99, 197, 720, 838, 937, 945, 1146, 1448, 1965 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 149 |
| AspA2I | CCTAGG | 1 cut(s) | 778 |
| AspLEI | GCGC | 2 cut(s) | 1974, 2010 |
| AsuHPI | GGTGA | 5 cut(s) | 26, 47, 707, 1629, 1929 |
| AvaII | GGWCC | 5 cut(s) | 135, 607, 1061, 1352, 1433 |
| AvrII | CCTAGG | 1 cut(s) | 778 |
| BaeGI | GKGCMC | 1 cut(s) | 295 |
| BanII | GRGCYC | 1 cut(s) | 295 |
| BbsI | GAAGAC | 4 cut(s) | 254, 656, 1308, 1869 |
| Bbv12I | GWGCWC | 1 cut(s) | 827 |
| BbvI | GCAGC | 3 cut(s) | 565, 647, 1834 |
| BccI | CCATC | 6 cut(s) | 20, 747, 751, 1038, 1227, 1849 |
| BciT130I | CCWGG | 2 cut(s) | 1437, 1494 |
| BciVI | GTATCC | 1 cut(s) | 452 |
| BclI | TGATCA | 2 cut(s) | 1008, 1675 |
| BcoDI | GTCTC | 2 cut(s) | 988, 1168 |
| BfaI | CTAG | 5 cut(s) | 252, 689, 779, 957, 1428 |
| BfmI | CTRYAG | 3 cut(s) | 579, 1225, 1418 |
| BfuAI | ACCTGC | 2 cut(s) | 864, 1232 |
| BfuI | GTATCC | 1 cut(s) | 452 |
| BglII | AGATCT | 3 cut(s) | 685, 1201, 2000 |
| BisI | GCNGC | 3 cut(s) | 579, 636, 1823 |
| BlnI | CCTAGG | 1 cut(s) | 778 |
| BlsI | GCNGC | 3 cut(s) | 580, 637, 1824 |
| Bme1390I | CCNGG | 2 cut(s) | 1437, 1494 |
| Bme18I | GGWCC | 5 cut(s) | 135, 607, 1061, 1352, 1433 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1001 |
| BmiI | GGNNCC | 3 cut(s) | 293, 1142, 1498 |
| BmrFI | CCNGG | 2 cut(s) | 1437, 1494 |
| BmrI | ACTGGG | 1 cut(s) | 170 |
| BmsI | GCATC | 5 cut(s) | 202, 214, 457, 954, 1556 |
| BmuI | ACTGGG | 1 cut(s) | 170 |
| BpiI | GAAGAC | 4 cut(s) | 254, 656, 1308, 1869 |
| Bpu10I | CCTNAGC | 2 cut(s) | 453, 1922 |
| BpuEI | CTTGAG | 2 cut(s) | 1438, 1783 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1200 |
| BsaJI | CCNNGG | 2 cut(s) | 778, 1532 |
| BsaWI | WCCGGW | 2 cut(s) | 264, 316 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 675, 705 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 974, 1373, 1493, 1514, 1626 |
| Bse1I | ACTGG | 1 cut(s) | 176 |
| Bse3DI | GCAATG | 4 cut(s) | 430, 442, 474, 747 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1200 |
| BseAI | TCCGGA | 1 cut(s) | 316 |
| BseBI | CCWGG | 2 cut(s) | 1437, 1494 |
| BseDI | CCNNGG | 2 cut(s) | 778, 1532 |
| BseGI | GGATG | 8 cut(s) | 91, 758, 762, 798, 1318, 1396, 1864, 1901 |
| BseJI | GATNNNNATC | 1 cut(s) | 1200 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 974, 1373, 1493, 1514, 1626 |
| BseMI | GCAATG | 4 cut(s) | 430, 442, 474, 747 |
| BseMII | CTCAG | 3 cut(s) | 1512, 1899, 2018 |
| BseNI | ACTGG | 1 cut(s) | 176 |
| BseRI | GAGGAG | 1 cut(s) | 1173 |
| BseSI | GKGCMC | 1 cut(s) | 295 |
| BseXI | GCAGC | 3 cut(s) | 565, 647, 1834 |
| BsgI | GTGCAG | 1 cut(s) | 1971 |
| BshFI | GGCC | 6 cut(s) | 293, 341, 566, 1290, 1319, 1444 |
| BsiHKAI | GWGCWC | 1 cut(s) | 827 |
| BsiSI | CCGG | 2 cut(s) | 265, 317 |
| BslFI | GGGAC | 2 cut(s) | 76, 1603 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 974, 1373, 1493, 1514, 1626 |
| BsmAI | GTCTC | 2 cut(s) | 988, 1168 |
| BsmFI | GGGAC | 2 cut(s) | 76, 1603 |
| BsmI | GAATGC | 2 cut(s) | 211, 407 |
| BsnI | GGCC | 6 cut(s) | 293, 341, 566, 1290, 1319, 1444 |
| Bsp120I | GGGCCC | 1 cut(s) | 291 |
| Bsp1286I | GDGCHC | 2 cut(s) | 295, 827 |
| Bsp13I | TCCGGA | 1 cut(s) | 316 |
| BspACI | CCGC | 1 cut(s) | 60 |
| BspANI | GGCC | 6 cut(s) | 293, 341, 566, 1290, 1319, 1444 |
| BspCNI | CTCAG | 3 cut(s) | 1513, 1900, 2017 |
| BspEI | TCCGGA | 1 cut(s) | 316 |
| BspHI | TCATGA | 2 cut(s) | 1005, 1192 |
| BspLI | GGNNCC | 3 cut(s) | 293, 1142, 1498 |
| BspMAI | CTGCAG | 2 cut(s) | 583, 1229 |
| BspMI | ACCTGC | 2 cut(s) | 864, 1232 |
| BspPI | GGATC | 3 cut(s) | 683, 790, 1906 |
| BspQI | GCTCTTC | 1 cut(s) | 568 |
| BsrDI | GCAATG | 4 cut(s) | 430, 442, 474, 747 |
| BsrI | ACTGG | 1 cut(s) | 176 |
| BssECI | CCNNGG | 2 cut(s) | 778, 1532 |
| BssNAI | GTATAC | 1 cut(s) | 506 |
| BssT1I | CCWWGG | 2 cut(s) | 778, 1532 |
| Bst1107I | GTATAC | 1 cut(s) | 506 |
| Bst2UI | CCWGG | 2 cut(s) | 1437, 1494 |
| Bst4CI | ACNGT | 6 cut(s) | 150, 323, 867, 1080, 1422, 1617 |
| Bst6I | CTCTTC | 5 cut(s) | 87, 568, 1150, 1600, 1770 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 587, 1271 |
| BstC8I | GCNNGC | 4 cut(s) | 858, 954, 1344, 2012 |
| BstDEI | CTNAG | 9 cut(s) | 453, 819, 1040, 1503, 1521, 1908, 1922, 1932, 2004 |
| BstF5I | GGATG | 8 cut(s) | 91, 758, 762, 798, 1318, 1396, 1864, 1901 |
| BstHHI | GCGC | 2 cut(s) | 1974, 2010 |
| BstMAI | GTCTC | 2 cut(s) | 988, 1168 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 476, 587, 1271 |
| BstNI | CCWGG | 2 cut(s) | 1437, 1494 |
| BstNSI | RCATGY | 5 cut(s) | 542, 1265, 1342, 1560, 1673 |
| BstSCI | CCNGG | 2 cut(s) | 1435, 1492 |
| BstSFI | CTRYAG | 3 cut(s) | 579, 1225, 1418 |
| BstSLI | GKGCMC | 1 cut(s) | 295 |
| BstV1I | GCAGC | 3 cut(s) | 565, 647, 1834 |
| BstV2I | GAAGAC | 4 cut(s) | 254, 656, 1308, 1869 |
| BstX2I | RGATCY | 4 cut(s) | 685, 782, 1201, 2000 |
| BstYI | RGATCY | 4 cut(s) | 685, 782, 1201, 2000 |
| BstZ17I | GTATAC | 1 cut(s) | 506 |
| BsuI | GTATCC | 1 cut(s) | 452 |
| BsuRI | GGCC | 6 cut(s) | 293, 341, 566, 1290, 1319, 1444 |
| BtgZI | GCGATG | 1 cut(s) | 1803 |
| BtsCI | GGATG | 8 cut(s) | 91, 758, 762, 798, 1318, 1396, 1864, 1901 |
| BtsI | GCAGTG | 1 cut(s) | 412 |
| BtsIMutI | CAGTG | 5 cut(s) | 249, 412, 872, 1249, 1766 |
| BveI | ACCTGC | 2 cut(s) | 864, 1232 |
| Cac8I | GCNNGC | 4 cut(s) | 858, 954, 1344, 2012 |
| CciI | TCATGA | 2 cut(s) | 1005, 1192 |
| CfoI | GCGC | 2 cut(s) | 1974, 2010 |
| Csp6I | GTAC | 5 cut(s) | 366, 597, 1111, 1221, 1423 |
| CviQI | GTAC | 5 cut(s) | 366, 597, 1111, 1221, 1423 |
| DdeI | CTNAG | 9 cut(s) | 453, 819, 1040, 1503, 1521, 1908, 1922, 1932, 2004 |
| DraI | TTTAAA | 1 cut(s) | 846 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1254 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1001 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1254 |
| Eam1104I | CTCTTC | 5 cut(s) | 87, 568, 1150, 1600, 1770 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1001 |
| EarI | CTCTTC | 5 cut(s) | 87, 568, 1150, 1600, 1770 |
| Eco130I | CCWWGG | 2 cut(s) | 778, 1532 |
| Eco147I | AGGCCT | 1 cut(s) | 1444 |
| Eco24I | GRGCYC | 1 cut(s) | 295 |
| Eco47I | GGWCC | 5 cut(s) | 135, 607, 1061, 1352, 1433 |
| Eco57I | CTGAAG | 2 cut(s) | 651, 1313 |
| EcoO109I | RGGNCCY | 3 cut(s) | 291, 1288, 1433 |
| EcoRI | GAATTC | 3 cut(s) | 99, 937, 1965 |
| EcoRII | CCWGG | 2 cut(s) | 1435, 1492 |
| EcoT14I | CCWWGG | 2 cut(s) | 778, 1532 |
| EcoT38I | GRGCYC | 1 cut(s) | 295 |
| ErhI | CCWWGG | 2 cut(s) | 778, 1532 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1111, 1143 |
| FaqI | GGGAC | 2 cut(s) | 76, 1603 |
| FauI | CCCGC | 1 cut(s) | 53 |
| FauNDI | CATATG | 1 cut(s) | 1348 |
| FbaI | TGATCA | 2 cut(s) | 1008, 1675 |
| FblI | GTMKAC | 2 cut(s) | 505, 1483 |
| Fnu4HI | GCNGC | 3 cut(s) | 579, 636, 1823 |
| FokI | GGATG | 8 cut(s) | 98, 765, 769, 805, 1325, 1403, 1851, 1888 |
| FriOI | GRGCYC | 1 cut(s) | 295 |
| Fsp4HI | GCNGC | 3 cut(s) | 579, 636, 1823 |
| FspBI | CTAG | 5 cut(s) | 252, 689, 779, 957, 1428 |
| GlaI | GCGC | 2 cut(s) | 1973, 2009 |
| GluI | GCNGC | 3 cut(s) | 579, 636, 1823 |
| HaeIII | GGCC | 6 cut(s) | 293, 341, 566, 1290, 1319, 1444 |
| HapII | CCGG | 2 cut(s) | 265, 317 |
| HhaI | GCGC | 2 cut(s) | 1974, 2010 |
| Hin6I | GCGC | 2 cut(s) | 1972, 2008 |
| HinP1I | GCGC | 2 cut(s) | 1972, 2008 |
| HindIII | AAGCTT | 1 cut(s) | 1680 |
| HinfI | GANTC | 7 cut(s) | 41, 68, 281, 626, 1124, 1161, 1634 |
| HpaII | CCGG | 2 cut(s) | 265, 317 |
| HphI | GGTGA | 5 cut(s) | 26, 47, 707, 1629, 1929 |
| Hpy166II | GTNNAC | 8 cut(s) | 153, 506, 1247, 1259, 1425, 1484, 1562, 1858 |
| Hpy188I | TCNGA | 8 cut(s) | 25, 46, 168, 204, 333, 1013, 1898, 1909 |
| Hpy188III | TCNNGA | 5 cut(s) | 317, 1006, 1193, 1455, 1515 |
| Hpy8I | GTNNAC | 8 cut(s) | 153, 506, 1247, 1259, 1425, 1484, 1562, 1858 |
| HpyAV | CCTTC | 9 cut(s) | 26, 410, 494, 674, 702, 755, 1434, 1521, 1653 |
| HpyCH4III | ACNGT | 6 cut(s) | 150, 323, 867, 1080, 1422, 1617 |
| HpyCH4IV | ACGT | 2 cut(s) | 74, 1480 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 476, 587, 1271 |
| HpyF3I | CTNAG | 9 cut(s) | 453, 819, 1040, 1503, 1521, 1908, 1922, 1932, 2004 |
| HpySE526I | ACGT | 2 cut(s) | 74, 1480 |
| HspAI | GCGC | 2 cut(s) | 1972, 2008 |
| Kpn2I | TCCGGA | 1 cut(s) | 316 |
| Ksp22I | TGATCA | 2 cut(s) | 1008, 1675 |
| LguI | GCTCTTC | 1 cut(s) | 568 |
| LmnI | GCTCC | 4 cut(s) | 445, 737, 870, 1808 |
| Lsp1109I | GCAGC | 3 cut(s) | 565, 647, 1834 |
| LweI | GCATC | 5 cut(s) | 202, 214, 457, 954, 1556 |
| MaeI | CTAG | 5 cut(s) | 252, 689, 779, 957, 1428 |
| MaeII | ACGT | 2 cut(s) | 74, 1480 |
| MaeIII | GTNAC | 6 cut(s) | 557, 876, 1413, 1527, 1848, 1935 |
| MfeI | CAATTG | 1 cut(s) | 600 |
| MflI | RGATCY | 4 cut(s) | 685, 782, 1201, 2000 |
| MhlI | GDGCHC | 2 cut(s) | 295, 827 |
| MlyI | GAGTC | 2 cut(s) | 635, 1170 |
| MroI | TCCGGA | 1 cut(s) | 316 |
| MroXI | GAANNNNTTC | 1 cut(s) | 149 |
| MseI | TTAA | 3 cut(s) | 378, 644, 845 |
| MslI | CAYNNNNRTG | 2 cut(s) | 435, 1721 |
| MspA1I | CMGCKG | 1 cut(s) | 60 |
| MspI | CCGG | 2 cut(s) | 265, 317 |
| MspR9I | CCNGG | 2 cut(s) | 1437, 1494 |
| MunI | CAATTG | 1 cut(s) | 600 |
| Mva1269I | GAATGC | 2 cut(s) | 211, 407 |
| MvaI | CCWGG | 2 cut(s) | 1437, 1494 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 476, 587, 1271 |
| NdeI | CATATG | 1 cut(s) | 1348 |
| NlaIV | GGNNCC | 3 cut(s) | 293, 1142, 1498 |
| NmuCI | GTSAC | 4 cut(s) | 876, 1413, 1848, 1935 |
| NspI | RCATGY | 5 cut(s) | 542, 1265, 1342, 1560, 1673 |
| PagI | TCATGA | 2 cut(s) | 1005, 1192 |
| PceI | AGGCCT | 1 cut(s) | 1444 |
| PciI | ACATGT | 1 cut(s) | 1556 |
| PciSI | GCTCTTC | 1 cut(s) | 568 |
| PctI | GAATGC | 2 cut(s) | 211, 407 |
| PdmI | GAANNNNTTC | 1 cut(s) | 149 |
| PfeI | GAWTC | 5 cut(s) | 41, 68, 281, 1124, 1634 |
| PflFI | GACNNNGTC | 1 cut(s) | 1933 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 1373, 1493, 1514 |
| PfoI | TCCNGGA | 1 cut(s) | 1492 |
| PkrI | GCNGC | 3 cut(s) | 580, 637, 1824 |
| PleI | GAGTC | 2 cut(s) | 634, 1169 |
| PpsI | GAGTC | 2 cut(s) | 634, 1169 |
| PpuMI | RGGWCCY | 1 cut(s) | 1433 |
| PscI | ACATGT | 1 cut(s) | 1556 |
| PsiI | TTATAA | 1 cut(s) | 1184 |
| Psp5II | RGGWCCY | 1 cut(s) | 1433 |
| Psp6I | CCWGG | 2 cut(s) | 1435, 1492 |
| PspGI | CCWGG | 2 cut(s) | 1435, 1492 |
| PspN4I | GGNNCC | 3 cut(s) | 293, 1142, 1498 |
| PspOMI | GGGCCC | 1 cut(s) | 291 |
| PspPPI | RGGWCCY | 1 cut(s) | 1433 |
| PstI | CTGCAG | 2 cut(s) | 583, 1229 |
| PsuI | RGATCY | 4 cut(s) | 685, 782, 1201, 2000 |
| PsyI | GACNNNGTC | 1 cut(s) | 1933 |
| RsaI | GTAC | 5 cut(s) | 367, 598, 1112, 1222, 1424 |
| RsaNI | GTAC | 5 cut(s) | 366, 597, 1111, 1221, 1423 |
| RseI | CAYNNNNRTG | 2 cut(s) | 435, 1721 |
| SapI | GCTCTTC | 1 cut(s) | 568 |
| SaqAI | TTAA | 3 cut(s) | 378, 644, 845 |
| SatI | GCNGC | 3 cut(s) | 579, 636, 1823 |
| SchI | GAGTC | 2 cut(s) | 635, 1170 |
| ScrFI | CCNGG | 2 cut(s) | 1437, 1494 |
| SduI | GDGCHC | 2 cut(s) | 295, 827 |
| SfaNI | GCATC | 5 cut(s) | 202, 214, 457, 954, 1556 |
| SfcI | CTRYAG | 3 cut(s) | 579, 1225, 1418 |
| SinI | GGWCC | 5 cut(s) | 135, 607, 1061, 1352, 1433 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 435, 1721 |
| SmlI | CTYRAG | 2 cut(s) | 1453, 1798 |
| SmoI | CTYRAG | 2 cut(s) | 1453, 1798 |
| SseBI | AGGCCT | 1 cut(s) | 1444 |
| SsiI | CCGC | 1 cut(s) | 60 |
| SspI | AATATT | 1 cut(s) | 642 |
| SspMI | CTAG | 5 cut(s) | 252, 689, 779, 957, 1428 |
| StuI | AGGCCT | 1 cut(s) | 1444 |
| StyD4I | CCNGG | 2 cut(s) | 1435, 1492 |
| StyI | CCWWGG | 2 cut(s) | 778, 1532 |
| TaaI | ACNGT | 6 cut(s) | 150, 323, 867, 1080, 1422, 1617 |
| TaiI | ACGT | 2 cut(s) | 77, 1483 |
| TaqI | TCGA | 2 cut(s) | 678, 1398 |
| TaqII | GACCGA | 1 cut(s) | 1049 |
| TatI | WGTACW | 1 cut(s) | 1422 |
| TfiI | GAWTC | 5 cut(s) | 41, 68, 281, 1124, 1634 |
| Tru1I | TTAA | 3 cut(s) | 378, 644, 845 |
| Tru9I | TTAA | 3 cut(s) | 378, 644, 845 |
| TscAI | CASTG | 5 cut(s) | 249, 412, 872, 1249, 1773 |
| TseFI | GTSAC | 4 cut(s) | 876, 1413, 1848, 1935 |
| TseI | GCWGC | 3 cut(s) | 578, 635, 1822 |
| Tsp45I | GTSAC | 4 cut(s) | 876, 1413, 1848, 1935 |
| TspDTI | ATGAA | 9 cut(s) | 102, 414, 436, 463, 758, 803, 809, 1806, 2010 |
| TspRI | CASTG | 5 cut(s) | 249, 412, 872, 1249, 1773 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1933 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 1373, 1493, 1514 |
| VpaK11BI | GGWCC | 5 cut(s) | 135, 607, 1061, 1352, 1433 |
| XapI | RAATTY | 9 cut(s) | 99, 197, 720, 838, 937, 945, 1146, 1448, 1965 |
| XceI | RCATGY | 5 cut(s) | 542, 1265, 1342, 1560, 1673 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 333 |
| XmaJI | CCTAGG | 1 cut(s) | 778 |
| XmiI | GTMKAC | 2 cut(s) | 505, 1483 |
| XmnI | GAANNNNTTC | 1 cut(s) | 149 |
| XspI | CTAG | 5 cut(s) | 252, 689, 779, 957, 1428 |