Rh4AG190800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000691
Physical Location & Seq
Reverse (-)
47179148 .. 47183980
4833 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG190800.1

Sequence Viewer

Length: 432 bp
ATGTCAGATGCGCCAAAAATGTGGAGATATTTTAGACTAGATGGGGAGCCACCAACAAGGCATGAAACTGATGATCAGAGTGTCCATGTGGAGCAAGCTGAAAATGTTCAAAGTGATGTGCAAGTTGAAAGTGATATGCATTATGGATCAGTGCAGCAAACTGCAAATGTACCAACACCCTCAATTGTTGCAAGTGCTTCATCTCAACCGATGATCTCATCACCACCTCTACCTCAGTCTTCTTTGCAGCCCACTGTTATCGGATCATCTCATACGTCCAGGACATTTGTATGTCCTAAGACAGGGATGCCATTCAAGACCAAGTCAATAGCACATAAGCCTAAGCCTAAACTTGTGATAGGAACAAGCACTAAAGCAAGAGCCCAACAAGGACCAAAGGAGGGTTCCAACAAGAAAATTTGGAAGCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

15.65

Weight (kDa)

9.48

Isoelectric Point (pI)

65.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 154, 271
AcsI RAATTY 1 cut(s) 417
AfaI GTAC 1 cut(s) 171
AfiI CCNNNNNNNGG 2 cut(s) 302, 401
AgsI TTSAA 3 cut(s) 110, 128, 316
AjnI CCWGG 1 cut(s) 278
AjuI GAANNNNNNNTTGG 2 cut(s) 388, 420
AluBI AGCT 1 cut(s) 98
AluI AGCT 1 cut(s) 98
AlwI GGATC 2 cut(s) 154, 271
ApeKI GCWGC 2 cut(s) 154, 247
ApoI RAATTY 1 cut(s) 417
Asp700I GAANNNNTTC 1 cut(s) 105
AspLEI GCGC 1 cut(s) 13
AspS9I GGNCC 1 cut(s) 392
AsuHPI GGTGA 1 cut(s) 213
AvaII GGWCC 1 cut(s) 392
BanII GRGCYC 1 cut(s) 385
BbsI GAAGAC 1 cut(s) 231
BbvI GCAGC 2 cut(s) 166, 259
BccI CCATC 1 cut(s) 35
BceAI ACGGC 1 cut(s) 412
BciT130I CCWGG 1 cut(s) 280
BclI TGATCA 1 cut(s) 73
BfaI CTAG 1 cut(s) 38
BisI GCNGC 2 cut(s) 155, 248
BlsI GCNGC 2 cut(s) 156, 249
Bme1390I CCNGG 1 cut(s) 280
Bme18I GGWCC 1 cut(s) 392
BmgT120I GGNCC 1 cut(s) 392
BmiI GGNNCC 2 cut(s) 48, 406
BmrFI CCNGG 1 cut(s) 280
BmsI GCATC 1 cut(s) 297
BpiI GAAGAC 1 cut(s) 231
Bpu10I CCTNAGC 1 cut(s) 342
Bsc4I CCNNNNNNNGG 2 cut(s) 302, 401
BseBI CCWGG 1 cut(s) 280
BseGI GGATG 1 cut(s) 312
BseLI CCNNNNNNNGG 2 cut(s) 302, 401
BseMII CTCAG 1 cut(s) 248
BseXI GCAGC 2 cut(s) 166, 259
BsgI GTGCAG 1 cut(s) 173
BslI CCNNNNNNNGG 2 cut(s) 302, 401
Bsp1286I GDGCHC 1 cut(s) 385
Bsp143I GATC 4 cut(s) 73, 146, 213, 263
BspCNI CTCAG 1 cut(s) 247
BspLI GGNNCC 2 cut(s) 48, 406
BspPI GGATC 2 cut(s) 154, 271
BssMI GATC 4 cut(s) 73, 146, 213, 263
Bst2UI CCWGG 1 cut(s) 280
Bst4CI ACNGT 1 cut(s) 256
BstC8I GCNNGC 1 cut(s) 96
BstDEI CTNAG 3 cut(s) 234, 297, 342
BstENI CCTNNNNNAGG 1 cut(s) 300
BstF5I GGATG 1 cut(s) 312
BstHHI GCGC 1 cut(s) 13
BstKTI GATC 4 cut(s) 76, 149, 216, 266
BstMBI GATC 4 cut(s) 73, 146, 213, 263
BstNI CCWGG 1 cut(s) 280
BstSCI CCNGG 1 cut(s) 278
BstV1I GCAGC 2 cut(s) 166, 259
BstV2I GAAGAC 1 cut(s) 231
BstXI CCANNNNNNTGG 1 cut(s) 21
BtsCI GGATG 1 cut(s) 312
BtsIMutI CAGTG 2 cut(s) 156, 252
Cac8I GCNNGC 1 cut(s) 96
CfoI GCGC 1 cut(s) 13
Cfr13I GGNCC 1 cut(s) 392
Csp6I GTAC 1 cut(s) 170
CviAII CATG 2 cut(s) 62, 86
CviJI RGCY 7 cut(s) 49, 98, 250, 340, 346, 383, 427
CviKI_1 RGCY 7 cut(s) 49, 98, 250, 340, 346, 383, 427
CviQI GTAC 1 cut(s) 170
DdeI CTNAG 3 cut(s) 234, 297, 342
DpnI GATC 4 cut(s) 75, 148, 215, 265
DpnII GATC 4 cut(s) 73, 146, 213, 263
Eco24I GRGCYC 1 cut(s) 385
Eco47I GGWCC 1 cut(s) 392
EcoNI CCTNNNNNAGG 1 cut(s) 300
EcoRII CCWGG 1 cut(s) 278
EcoT22I ATGCAT 1 cut(s) 141
EcoT38I GRGCYC 1 cut(s) 385
FaeI CATG 2 cut(s) 65, 89
FaiI YATR 7 cut(s) 63, 87, 137, 144, 273, 292, 336
FatI CATG 2 cut(s) 61, 85
FbaI TGATCA 1 cut(s) 73
Fnu4HI GCNGC 2 cut(s) 155, 248
FokI GGATG 1 cut(s) 319
FriOI GRGCYC 1 cut(s) 385
Fsp4HI GCNGC 2 cut(s) 155, 248
FspBI CTAG 1 cut(s) 38
GlaI GCGC 1 cut(s) 12
GluI GCNGC 2 cut(s) 155, 248
HhaI GCGC 1 cut(s) 13
Hin1II CATG 2 cut(s) 65, 89
Hin6I GCGC 1 cut(s) 11
HinP1I GCGC 1 cut(s) 11
HphI GGTGA 1 cut(s) 213
Hpy188I TCNGA 3 cut(s) 7, 78, 263
Hpy188III TCNNGA 1 cut(s) 316
HpyCH4III ACNGT 1 cut(s) 256
HpyCH4IV ACGT 1 cut(s) 275
HpyCH4V TGCA 6 cut(s) 121, 139, 154, 164, 191, 247
HpyF3I CTNAG 3 cut(s) 234, 297, 342
HpySE526I ACGT 1 cut(s) 275
Hsp92II CATG 2 cut(s) 65, 89
HspAI GCGC 1 cut(s) 11
Ksp22I TGATCA 1 cut(s) 73
Kzo9I GATC 4 cut(s) 73, 146, 213, 263
LmnI GCTCC 2 cut(s) 46, 91
LpnPI CCDG 3 cut(s) 265, 288, 292
Lsp1109I GCAGC 2 cut(s) 166, 259
LweI GCATC 1 cut(s) 297
MaeI CTAG 1 cut(s) 38
MaeII ACGT 1 cut(s) 275
MalI GATC 4 cut(s) 75, 148, 215, 265
MboI GATC 4 cut(s) 73, 146, 213, 263
MboII GAAGA 1 cut(s) 231
MfeI CAATTG 1 cut(s) 183
MhlI GDGCHC 1 cut(s) 385
MluCI AATT 2 cut(s) 183, 417
MmeI TCCRAC 1 cut(s) 432
MnlI CCTC 4 cut(s) 190, 237, 243, 394
Mph1103I ATGCAT 1 cut(s) 141
MroXI GAANNNNTTC 1 cut(s) 105
MslI CAYNNNNRTG 1 cut(s) 289
MspR9I CCNGG 1 cut(s) 280
MunI CAATTG 1 cut(s) 183
MvaI CCWGG 1 cut(s) 280
NdeII GATC 4 cut(s) 73, 146, 213, 263
NlaIII CATG 2 cut(s) 65, 89
NlaIV GGNNCC 2 cut(s) 48, 406
NsiI ATGCAT 1 cut(s) 141
PdmI GAANNNNTTC 1 cut(s) 105
PflFI GACNNNGTC 1 cut(s) 322
PfoI TCCNGGA 1 cut(s) 278
PkrI GCNGC 2 cut(s) 156, 249
Psp6I CCWGG 1 cut(s) 278
PspGI CCWGG 1 cut(s) 278
PspN4I GGNNCC 2 cut(s) 48, 406
PspPI GGNCC 1 cut(s) 392
PsyI GACNNNGTC 1 cut(s) 322
RsaI GTAC 1 cut(s) 171
RsaNI GTAC 1 cut(s) 170
RseI CAYNNNNRTG 1 cut(s) 289
SatI GCNGC 2 cut(s) 155, 248
Sau3AI GATC 4 cut(s) 73, 146, 213, 263
Sau96I GGNCC 1 cut(s) 392
ScrFI CCNGG 1 cut(s) 280
SduI GDGCHC 1 cut(s) 385
SetI ASST 4 cut(s) 100, 229, 235, 278
SfaNI GCATC 1 cut(s) 297
SinI GGWCC 1 cut(s) 392
SmiMI CAYNNNNRTG 1 cut(s) 289
Sse9I AATT 2 cut(s) 183, 417
SspMI CTAG 1 cut(s) 38
StyD4I CCNGG 1 cut(s) 278
TaaI ACNGT 1 cut(s) 256
TaiI ACGT 1 cut(s) 278
TasI AATT 2 cut(s) 183, 417
TscAI CASTG 2 cut(s) 156, 259
TseI GCWGC 2 cut(s) 154, 247
TspDTI ATGAA 2 cut(s) 78, 189
TspRI CASTG 2 cut(s) 156, 259
Tth111I GACNNNGTC 1 cut(s) 322
VpaK11BI GGWCC 1 cut(s) 392
XagI CCTNNNNNAGG 1 cut(s) 300
XapI RAATTY 1 cut(s) 417
XmnI GAANNNNTTC 1 cut(s) 105
XspI CTAG 1 cut(s) 38
Zsp2I ATGCAT 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.