Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000691

Physical Location & Seq

Genomic Coordinates Reverse (-)

41816346 .. 41829335

Gene Structure 12990 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG321700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGCTGAAGTTGTGGGTGGAGCTTTTCTCTCTTCTGCTCTTGCTGTTTTGTTTGATAGGATGGATTCCCGTCCGGTTCTTGACTTCATCCGAGGAAAGAAGACCACCGAGGGGCTGATCCGGACGTTGAAGATTAAGTTGTTGTTGGTTAATAACTTTCTCGATGATGCAGAGGAGAAGCAACTCAGAAACTCTAGAGTCAGGGAATGGCTTAATGAGCTTAAAGATGTTCTCTTTCATGCCGATGACCTGTTGGATGACATCAAGACTGAAGCTCTGCGTTGCAAGATGGAACGAGAAGATTGTGGAAGCAGCAGCATAAATCAGGTTCAACCATCAGAAACTGATGTTCAGAGTGTCCATGTGGAGCAAGCTGAAAATGTTCAAAGTGATGTGCAAGTTGAAAGTGATATGCATTATGGATCAGTGCAGCAAACTGCAAATGTACCAACACCCTCAATTGTTGCAAGCGCTTCATCTCAACCGATGATCTCATCACCACCTCTACCTCAGTCTTCTTTGCAGCCCACTGTTATCGGATCATCTCATACGTCCAGGACATTTGTATGTCCTAAGACAGGGAAGCCATTCAAGACCAAGTCAATAGCACATAAGCCTAAGCCTAAACTTGTGATAGGAACAAGCACTAAAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009626 GO:0009987 GO:0012501 GO:0016020 GO:0023052 GO:0033554 GO:0034050 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

218

Amino Acids

23.96

Weight (kDa)

6.52

Isoelectric Point (pI)

50.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	9 - 101	3e-18	Rx N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000691)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g09131 FvH4_5g29241 FvH4_5g38700 FvH4_6g10171 FvH4_6g31671 FvH4_7g25602
rosa_chinensis	RchiOBHm_Chr3g0477061 RchiOBHm_Chr5g0037961 RchiOBHm_Chr5g0045201 RchiOBHm_Chr5g0075681 RchiOBHm_Chr6g0255251 RchiOBHm_Chr6g0276481 RchiOBHm_Chr7g0188661 RchiOBHm_Chr7g0212591
rosa_laevigata	RLG00000014285 RLG00000019737 RLG00000020231 RLG00000027687 RLG00000028530 RLG00000029679
rosa_multiflora	Rmu_sc0008577.1_g000011 Rmu_sc0010616.1_g000005 Rmu_ssc0000255.1_g000048
rosa_roxburghii	Rroxscaffold_1G00039250 Rroxscaffold_2G00087850 Rroxscaffold_3G00231610 Rroxscaffold_3G00276260 Rroxscaffold_3G00276270
rosa_rugosa	Rorug01G0345200.1 Rorug02G0070900 Rorug03G0279300
rosa_samantha	Rh1AG087400 Rh1AG177300 Rh1BG218300 Rh1CG085600 Rh1CG164600 Rh1CG231700 Rh1CG234900 Rh1DG092000 Rh1DG244700 Rh3AG293200 Rh3BG241800 Rh3CG102600 Rh3CG163100 Rh3CG278400 Rh3DG163700 Rh3DG208200 Rh4AG190800 Rh4DG072100 Rh5AG271800 Rh5BG011900 Rh5BG311500 Rh5CG245000 Rh5CG402400 Rh5DG009700 Rh5DG321700 Rh6BG065700 Rh6BG431400 Rh6CG449000 Rh6DG208800 Rh7AG267300 Rh7BG437400 Rh7CG285800 Rh7CG418900 Rh7CG450100 Rh7DG275300
rosa_wichuraiana	Rw0G005630 Rw0G009300 Rw0G023360 Rw1G017030 Rw1G017050 Rw4G035810 Rw6G031650 Rw7G008390 Rw7G022990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	120
AclWI	GGATC	3 cut(s)	112, 430, 547
AcuI	CTGAAG	2 cut(s)	27, 291
AfaI	GTAC	1 cut(s)	447
AfeI	AGCGCT	1 cut(s)	472
AfiI	CCNNNNNNNGG	2 cut(s)	111, 578
AgsI	TTSAA	5 cut(s)	130, 332, 386, 404, 592
AjnI	CCWGG	1 cut(s)	554
AluBI	AGCT	4 cut(s)	23, 220, 275, 374
AluI	AGCT	4 cut(s)	23, 220, 275, 374
AlwI	GGATC	3 cut(s)	112, 430, 547
AlwNI	CAGNNNCTG	1 cut(s)	344
Aor13HI	TCCGGA	1 cut(s)	120
Aor51HI	AGCGCT	1 cut(s)	472
ApeKI	GCWGC	4 cut(s)	312, 315, 430, 523
Asp700I	GAANNNNTTC	2 cut(s)	381, 587
AspLEI	GCGC	1 cut(s)	473
AsuHPI	GGTGA	1 cut(s)	489
BbsI	GAAGAC	2 cut(s)	107, 507
BbvI	GCAGC	4 cut(s)	324, 327, 442, 535
BccI	CCATC	3 cut(s)	55, 283, 343
BciT130I	CCWGG	1 cut(s)	556
BfaI	CTAG	1 cut(s)	195
BfoI	RGCGCY	1 cut(s)	474
BisI	GCNGC	4 cut(s)	313, 316, 431, 524
BlsI	GCNGC	4 cut(s)	314, 317, 432, 525
Bme1390I	CCNGG	1 cut(s)	556
BmrFI	CCNGG	1 cut(s)	556
BmsI	GCATC	1 cut(s)	157
BpiI	GAAGAC	2 cut(s)	107, 507
BplI	GAGNNNNNCTC	2 cut(s)	12, 44
Bpu10I	CCTNAGC	1 cut(s)	618
BsaJI	CCNNGG	2 cut(s)	91, 108
BsaWI	WCCGGW	2 cut(s)	73, 120
Bsc4I	CCNNNNNNNGG	2 cut(s)	111, 578
BseAI	TCCGGA	1 cut(s)	120
BseBI	CCWGG	1 cut(s)	556
BseDI	CCNNGG	2 cut(s)	91, 108
BseGI	GGATG	3 cut(s)	66, 87, 262
BseLI	CCNNNNNNNGG	2 cut(s)	111, 578
BseMII	CTCAG	2 cut(s)	199, 524
BseRI	GAGGAG	1 cut(s)	188
BseXI	GCAGC	4 cut(s)	324, 327, 442, 535
BsgI	GTGCAG	1 cut(s)	449
BsiSI	CCGG	2 cut(s)	74, 121
BslI	CCNNNNNNNGG	2 cut(s)	111, 578
Bsp13I	TCCGGA	1 cut(s)	120
Bsp143I	GATC	4 cut(s)	117, 422, 489, 539
BspCNI	CTCAG	2 cut(s)	198, 523
BspEI	TCCGGA	1 cut(s)	120
BspPI	GGATC	3 cut(s)	112, 430, 547
BssECI	CCNNGG	2 cut(s)	91, 108
BssMI	GATC	4 cut(s)	117, 422, 489, 539
Bst2UI	CCWGG	1 cut(s)	556
Bst4CI	ACNGT	1 cut(s)	532
Bst6I	CTCTTC	1 cut(s)	37
BstC8I	GCNNGC	2 cut(s)	372, 469
BstDEI	CTNAG	4 cut(s)	185, 510, 573, 618
BstENI	CCTNNNNNAGG	1 cut(s)	576
BstF5I	GGATG	3 cut(s)	66, 87, 262
BstH2I	RGCGCY	1 cut(s)	474
BstHHI	GCGC	1 cut(s)	473
BstKTI	GATC	4 cut(s)	120, 425, 492, 542
BstMBI	GATC	4 cut(s)	117, 422, 489, 539
BstMWI	GCNNNNNNNGC	1 cut(s)	217
BstNI	CCWGG	1 cut(s)	556
BstSCI	CCNGG	1 cut(s)	554
BstV1I	GCAGC	4 cut(s)	324, 327, 442, 535
BstV2I	GAAGAC	2 cut(s)	107, 507
BtsCI	GGATG	3 cut(s)	66, 87, 262
BtsIMutI	CAGTG	2 cut(s)	432, 528
Cac8I	GCNNGC	2 cut(s)	372, 469
CaiI	CAGNNNCTG	1 cut(s)	344
CfoI	GCGC	1 cut(s)	473
Csp6I	GTAC	1 cut(s)	446
CviAII	CATG	3 cut(s)	239, 362, 654
CviQI	GTAC	1 cut(s)	446
DdeI	CTNAG	4 cut(s)	185, 510, 573, 618
DpnI	GATC	4 cut(s)	119, 424, 491, 541
DpnII	GATC	4 cut(s)	117, 422, 489, 539
Eam1104I	CTCTTC	1 cut(s)	37
EarI	CTCTTC	1 cut(s)	37
Eco47III	AGCGCT	1 cut(s)	472
Eco57I	CTGAAG	2 cut(s)	27, 291
EcoNI	CCTNNNNNAGG	1 cut(s)	576
EcoRII	CCWGG	1 cut(s)	554
EcoT22I	ATGCAT	1 cut(s)	417
FaeI	CATG	3 cut(s)	242, 365, 657
FaiI	YATR	9 cut(s)	240, 320, 363, 413, 420, 549, 568, 612, 655
FatI	CATG	3 cut(s)	238, 361, 653
Fnu4HI	GCNGC	4 cut(s)	313, 316, 431, 524
FokI	GGATG	3 cut(s)	73, 74, 269
Fsp4HI	GCNGC	4 cut(s)	313, 316, 431, 524
FspBI	CTAG	1 cut(s)	195
GlaI	GCGC	1 cut(s)	472
GluI	GCNGC	4 cut(s)	313, 316, 431, 524
HaeII	RGCGCY	1 cut(s)	474
HapII	CCGG	2 cut(s)	74, 121
HhaI	GCGC	1 cut(s)	473
Hin1II	CATG	3 cut(s)	242, 365, 657
Hin6I	GCGC	1 cut(s)	471
HinP1I	GCGC	1 cut(s)	471
HinfI	GANTC	2 cut(s)	65, 198
HpaII	CCGG	2 cut(s)	74, 121
HphI	GGTGA	1 cut(s)	489
Hpy188I	TCNGA	5 cut(s)	92, 188, 340, 354, 539
Hpy188III	TCNNGA	6 cut(s)	80, 121, 161, 195, 265, 592
HpyCH4III	ACNGT	1 cut(s)	532
HpyCH4IV	ACGT	2 cut(s)	125, 551
HpyCH4V	TGCA	8 cut(s)	170, 285, 397, 415, 430, 440, 467, 523
HpyF10VI	GCNNNNNNNGC	1 cut(s)	217
HpyF3I	CTNAG	4 cut(s)	185, 510, 573, 618
HpySE526I	ACGT	2 cut(s)	125, 551
Hsp92II	CATG	3 cut(s)	242, 365, 657
HspAI	GCGC	1 cut(s)	471
Kpn2I	TCCGGA	1 cut(s)	120
Kzo9I	GATC	4 cut(s)	117, 422, 489, 539
LmnI	GCTCC	2 cut(s)	20, 367
LpnPI	CCDG	8 cut(s)	87, 134, 187, 263, 311, 541, 564, 568
Lsp1109I	GCAGC	4 cut(s)	324, 327, 442, 535
LweI	GCATC	1 cut(s)	157
MaeI	CTAG	1 cut(s)	195
MaeII	ACGT	2 cut(s)	125, 551
MalI	GATC	4 cut(s)	119, 424, 491, 541
MboI	GATC	4 cut(s)	117, 422, 489, 539
MboII	GAAGA	5 cut(s)	24, 112, 142, 311, 507
MfeI	CAATTG	1 cut(s)	459
MluCI	AATT	1 cut(s)	459
MlyI	GAGTC	1 cut(s)	207
MmeI	TCCRAC	1 cut(s)	234
MnlI	CCTC	6 cut(s)	86, 103, 166, 466, 513, 519
Mph1103I	ATGCAT	1 cut(s)	417
MroI	TCCGGA	1 cut(s)	120
MroXI	GAANNNNTTC	2 cut(s)	381, 587
MseI	TTAA	4 cut(s)	135, 150, 213, 222
MslI	CAYNNNNRTG	2 cut(s)	243, 565
MspI	CCGG	2 cut(s)	74, 121
MspR9I	CCNGG	1 cut(s)	556
MunI	CAATTG	1 cut(s)	459
MvaI	CCWGG	1 cut(s)	556
MwoI	GCNNNNNNNGC	1 cut(s)	217
NdeII	GATC	4 cut(s)	117, 422, 489, 539
NlaIII	CATG	3 cut(s)	242, 365, 657
NsiI	ATGCAT	1 cut(s)	417
PdmI	GAANNNNTTC	2 cut(s)	381, 587
PfeI	GAWTC	1 cut(s)	65
PflFI	GACNNNGTC	1 cut(s)	598
PfoI	TCCNGGA	1 cut(s)	554
PkrI	GCNGC	4 cut(s)	314, 317, 432, 525
PleI	GAGTC	1 cut(s)	206
PpsI	GAGTC	1 cut(s)	206
Psp6I	CCWGG	1 cut(s)	554
PspGI	CCWGG	1 cut(s)	554
PstNI	CAGNNNCTG	1 cut(s)	344
PsyI	GACNNNGTC	1 cut(s)	598
RsaI	GTAC	1 cut(s)	447
RsaNI	GTAC	1 cut(s)	446
RseI	CAYNNNNRTG	2 cut(s)	243, 565
SaqAI	TTAA	4 cut(s)	135, 150, 213, 222
SatI	GCNGC	4 cut(s)	313, 316, 431, 524
Sau3AI	GATC	4 cut(s)	117, 422, 489, 539
SchI	GAGTC	1 cut(s)	207
ScrFI	CCNGG	1 cut(s)	556
SfaNI	GCATC	1 cut(s)	157
SmiMI	CAYNNNNRTG	2 cut(s)	243, 565
Sse9I	AATT	1 cut(s)	459
SspMI	CTAG	1 cut(s)	195
StyD4I	CCNGG	1 cut(s)	554
TaaI	ACNGT	1 cut(s)	532
TaiI	ACGT	2 cut(s)	128, 554
TaqI	TCGA	1 cut(s)	162
TasI	AATT	1 cut(s)	459
TfiI	GAWTC	1 cut(s)	65
Tru1I	TTAA	4 cut(s)	135, 150, 213, 222
Tru9I	TTAA	4 cut(s)	135, 150, 213, 222
TscAI	CASTG	2 cut(s)	432, 535
TseI	GCWGC	4 cut(s)	312, 315, 430, 523
TspDTI	ATGAA	3 cut(s)	76, 227, 465
TspRI	CASTG	2 cut(s)	432, 535
Tth111I	GACNNNGTC	1 cut(s)	598
XagI	CCTNNNNNAGG	1 cut(s)	576
XbaI	TCTAGA	1 cut(s)	194
XmnI	GAANNNNTTC	2 cut(s)	381, 587
XspI	CTAG	1 cut(s)	195
Zsp2I	ATGCAT	1 cut(s)	417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.