Rh5BG011900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000691
Physical Location & Seq
Forward (+)
902252 .. 904267
2016 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG011900.1

Sequence Viewer

Length: 183 bp
ATGCATAATGAGATGGTGCTTTTGATAGGCCGACGACCTGGAGACATTGCAGACTTGATGGAGATCCAACAACAAGGCATGGTACCGACACCCTCAAATGTTACAAGTGGTTCATCTCAACCAGTGATCTCATCATCACCATTTATGACACAAGTTAACATTCAGCCTCAGTCTTGTTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

60

Amino Acids

6.47

Weight (kDa)

4.75

Isoelectric Point (pI)

102.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 82
AccB1I GGYRCC 1 cut(s) 82
AclWI GGATC 1 cut(s) 58
AfaI GTAC 1 cut(s) 84
AjnI CCWGG 1 cut(s) 37
Alw26I GTCTC 1 cut(s) 36
AlwI GGATC 1 cut(s) 58
AoxI GGCC 1 cut(s) 28
Asp718I GGTACC 1 cut(s) 82
AsuHPI GGTGA 1 cut(s) 129
BanI GGYRCC 1 cut(s) 82
BccI CCATC 2 cut(s) 7, 52
BciT130I CCWGG 1 cut(s) 39
BcoDI GTCTC 1 cut(s) 36
Bme1390I CCNGG 1 cut(s) 39
BmiI GGNNCC 1 cut(s) 84
BmrFI CCNGG 1 cut(s) 39
BpmI CTGGAG 1 cut(s) 60
BsaBI GATNNNNATC 1 cut(s) 62
Bse1I ACTGG 1 cut(s) 122
Bse3DI GCAATG 1 cut(s) 45
Bse8I GATNNNNATC 1 cut(s) 62
BseBI CCWGG 1 cut(s) 39
BseJI GATNNNNATC 1 cut(s) 62
BseMI GCAATG 1 cut(s) 45
BseMII CTCAG 1 cut(s) 182
BseNI ACTGG 1 cut(s) 122
BshFI GGCC 1 cut(s) 30
BshNI GGYRCC 1 cut(s) 82
BsmAI GTCTC 1 cut(s) 36
BsnI GGCC 1 cut(s) 30
Bsp143I GATC 2 cut(s) 63, 126
BspANI GGCC 1 cut(s) 30
BspCNI CTCAG 1 cut(s) 181
BspLI GGNNCC 1 cut(s) 84
BspPI GGATC 1 cut(s) 58
BspT107I GGYRCC 1 cut(s) 82
BsrDI GCAATG 1 cut(s) 45
BsrI ACTGG 1 cut(s) 122
BssMI GATC 2 cut(s) 63, 126
Bst2UI CCWGG 1 cut(s) 39
BstDEI CTNAG 1 cut(s) 168
BstKTI GATC 2 cut(s) 66, 129
BstMAI GTCTC 1 cut(s) 36
BstMBI GATC 2 cut(s) 63, 126
BstNI CCWGG 1 cut(s) 39
BstSCI CCNGG 1 cut(s) 37
BstX2I RGATCY 1 cut(s) 63
BstYI RGATCY 1 cut(s) 63
BsuRI GGCC 1 cut(s) 30
BtsIMutI CAGTG 1 cut(s) 129
Csp6I GTAC 1 cut(s) 83
CviAII CATG 1 cut(s) 79
CviJI RGCY 2 cut(s) 30, 166
CviKI_1 RGCY 2 cut(s) 30, 166
CviQI GTAC 1 cut(s) 83
DdeI CTNAG 1 cut(s) 168
DpnI GATC 2 cut(s) 65, 128
DpnII GATC 2 cut(s) 63, 126
EcoRII CCWGG 1 cut(s) 37
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 1 cut(s) 82
FaiI YATR 3 cut(s) 6, 80, 146
FatI CATG 1 cut(s) 78
GsuI CTGGAG 1 cut(s) 60
HaeIII GGCC 1 cut(s) 30
Hin1II CATG 1 cut(s) 82
HincII GTYRAC 1 cut(s) 157
HindII GTYRAC 1 cut(s) 157
HpaI GTTAAC 1 cut(s) 157
HphI GGTGA 1 cut(s) 129
Hpy166II GTNNAC 1 cut(s) 157
Hpy8I GTNNAC 1 cut(s) 157
Hpy99I CGWCG 1 cut(s) 36
HpyCH4V TGCA 2 cut(s) 4, 50
HpyF3I CTNAG 1 cut(s) 168
Hsp92II CATG 1 cut(s) 82
KpnI GGTACC 1 cut(s) 86
KspAI GTTAAC 1 cut(s) 157
Kzo9I GATC 2 cut(s) 63, 126
LpnPI CCDG 3 cut(s) 24, 51, 135
MaeIII GTNAC 1 cut(s) 100
MalI GATC 2 cut(s) 65, 128
MboI GATC 2 cut(s) 63, 126
MflI RGATCY 1 cut(s) 63
MmeI TCCRAC 1 cut(s) 91
MnlI CCTC 2 cut(s) 103, 177
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 156
MspR9I CCNGG 1 cut(s) 39
MvaI CCWGG 1 cut(s) 39
NdeII GATC 2 cut(s) 63, 126
NlaIII CATG 1 cut(s) 82
NlaIV GGNNCC 1 cut(s) 84
NsiI ATGCAT 1 cut(s) 6
Psp6I CCWGG 1 cut(s) 37
PspGI CCWGG 1 cut(s) 37
PspN4I GGNNCC 1 cut(s) 84
PsuI RGATCY 1 cut(s) 63
RsaI GTAC 1 cut(s) 84
RsaNI GTAC 1 cut(s) 83
SaqAI TTAA 1 cut(s) 156
Sau3AI GATC 2 cut(s) 63, 126
ScrFI CCNGG 1 cut(s) 39
SetI ASST 1 cut(s) 40
SgeI CNNG 8 cut(s) 50, 51, 67, 86, 91, 117, 134, 164
StyD4I CCNGG 1 cut(s) 37
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TscAI CASTG 1 cut(s) 129
TspDTI ATGAA 1 cut(s) 102
TspRI CASTG 1 cut(s) 129
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.