RLG00000027687

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000691
Physical Location & Seq
Forward (+)
13943526 .. 13944351
826 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027687

Sequence Viewer

Length: 399 bp
ATGCAGCAAGGCGATGCAAATGAAAAAGGTTCTCAAAATGTTCGGCAAGATGGCAATGCAATTGATGAACATAGAATGCAGAATGCTCAGCAATGTGGCAATTCTAATGGACATAGTTTTGAAAATGTTCATGATAAGGAGCATCATGAGATTCCATCTCAACAATCACTTGTGAAAGCACCTTTTGTTTCATCGCAACCACTTCCATCACCTCTAAATTTCTCACAAGAAATTCCTCCAGTTCAAAGAAGTTCTCAACCCATTGGATCATCCTTAGCTTCCTTCTCCATGATGTACACTGATCCTATAACAGGGAGGCCAAAGAAGCAAGTTGCATTTAGAAATCCTAAGAATTCTATGTCAACTGAGAATGCAAGCATGCCTATTTGGAGACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

14.67

Weight (kDa)

6.97

Isoelectric Point (pI)

61.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 274, 296
AcsI RAATTY 3 cut(s) 217, 231, 352
AfaI GTAC 1 cut(s) 296
AfiI CCNNNNNNNGG 1 cut(s) 311
AgsI TTSAA 2 cut(s) 122, 245
AluBI AGCT 1 cut(s) 278
AluI AGCT 1 cut(s) 278
Alw26I GTCTC 1 cut(s) 385
AlwI GGATC 2 cut(s) 274, 296
AoxI GGCC 1 cut(s) 317
ApeKI GCWGC 1 cut(s) 4
ApoI RAATTY 3 cut(s) 217, 231, 352
Asp700I GAANNNNTTC 1 cut(s) 126
AsuHPI GGTGA 1 cut(s) 201
BbvI GCAGC 1 cut(s) 16
BccI CCATC 3 cut(s) 44, 163, 214
BcoDI GTCTC 1 cut(s) 385
BisI GCNGC 1 cut(s) 5
BlpI GCTNAGC 1 cut(s) 87
BlsI GCNGC 1 cut(s) 6
BmsI GCATC 2 cut(s) 4, 151
BpmI CTGGAG 1 cut(s) 222
Bpu10I CCTNAGC 1 cut(s) 274
Bpu1102I GCTNAGC 1 cut(s) 87
BsaI GGTCTC 1 cut(s) 385
Bsc4I CCNNNNNNNGG 1 cut(s) 311
Bse1I ACTGG 1 cut(s) 239
Bse3DI GCAATG 2 cut(s) 61, 98
BseGI GGATG 1 cut(s) 269
BseLI CCNNNNNNNGG 1 cut(s) 311
BseMI GCAATG 2 cut(s) 61, 98
BseMII CTCAG 2 cut(s) 101, 357
BseNI ACTGG 1 cut(s) 239
BseXI GCAGC 1 cut(s) 16
BshFI GGCC 1 cut(s) 319
BslI CCNNNNNNNGG 1 cut(s) 311
BsmAI GTCTC 1 cut(s) 385
BsmI GAATGC 3 cut(s) 81, 88, 376
BsnI GGCC 1 cut(s) 319
Bso31I GGTCTC 1 cut(s) 385
Bsp1407I TGTACA 1 cut(s) 294
Bsp143I GATC 2 cut(s) 266, 301
Bsp1720I GCTNAGC 1 cut(s) 87
BspANI GGCC 1 cut(s) 319
BspCNI CTCAG 2 cut(s) 100, 358
BspHI TCATGA 2 cut(s) 130, 145
BspPI GGATC 2 cut(s) 274, 296
BspTNI GGTCTC 1 cut(s) 385
BsrDI GCAATG 2 cut(s) 61, 98
BsrGI TGTACA 1 cut(s) 294
BsrI ACTGG 1 cut(s) 239
BssMI GATC 2 cut(s) 266, 301
BstAUI TGTACA 1 cut(s) 294
BstC8I GCNNGC 2 cut(s) 376, 380
BstDEI CTNAG 4 cut(s) 87, 274, 348, 366
BstENI CCTNNNNNAGG 1 cut(s) 309
BstF5I GGATG 1 cut(s) 269
BstKTI GATC 2 cut(s) 269, 304
BstMAI GTCTC 1 cut(s) 385
BstMBI GATC 2 cut(s) 266, 301
BstMWI GCNNNNNNNGC 1 cut(s) 325
BstNSI RCATGY 1 cut(s) 382
BstV1I GCAGC 1 cut(s) 16
BsuRI GGCC 1 cut(s) 319
BtgZI GCGATG 2 cut(s) 27, 177
BtsCI GGATG 1 cut(s) 269
BtsIMutI CAGTG 1 cut(s) 297
Cac8I GCNNGC 2 cut(s) 376, 380
CciI TCATGA 2 cut(s) 130, 145
Csp6I GTAC 1 cut(s) 295
CviAII CATG 4 cut(s) 131, 146, 289, 379
CviJI RGCY 2 cut(s) 278, 319
CviKI_1 RGCY 2 cut(s) 278, 319
CviQI GTAC 1 cut(s) 295
DdeI CTNAG 4 cut(s) 87, 274, 348, 366
DpnI GATC 2 cut(s) 268, 303
DpnII GATC 2 cut(s) 266, 301
Eco31I GGTCTC 1 cut(s) 385
EcoNI CCTNNNNNAGG 1 cut(s) 309
EcoRI GAATTC 1 cut(s) 352
FaeI CATG 4 cut(s) 134, 149, 292, 382
FaiI YATR 8 cut(s) 72, 114, 132, 147, 290, 308, 359, 380
FatI CATG 4 cut(s) 130, 145, 288, 378
Fnu4HI GCNGC 1 cut(s) 5
FokI GGATG 1 cut(s) 256
Fsp4HI GCNGC 1 cut(s) 5
GluI GCNGC 1 cut(s) 5
GsuI CTGGAG 1 cut(s) 222
HaeIII GGCC 1 cut(s) 319
Hin1II CATG 4 cut(s) 134, 149, 292, 382
HincII GTYRAC 1 cut(s) 363
HindII GTYRAC 1 cut(s) 363
HinfI GANTC 1 cut(s) 151
HphI GGTGA 1 cut(s) 201
Hpy166II GTNNAC 2 cut(s) 297, 363
Hpy188III TCNNGA 2 cut(s) 131, 146
Hpy8I GTNNAC 2 cut(s) 297, 363
HpyAV CCTTC 1 cut(s) 292
HpyCH4V TGCA 6 cut(s) 4, 17, 59, 79, 335, 374
HpyF10VI GCNNNNNNNGC 1 cut(s) 325
HpyF3I CTNAG 4 cut(s) 87, 274, 348, 366
Hsp92II CATG 4 cut(s) 134, 149, 292, 382
Kzo9I GATC 2 cut(s) 266, 301
LmnI GCTCC 1 cut(s) 139
LpnPI CCDG 2 cut(s) 252, 297
Lsp1109I GCAGC 1 cut(s) 16
LweI GCATC 2 cut(s) 4, 151
MalI GATC 2 cut(s) 268, 303
MboI GATC 2 cut(s) 266, 301
MfeI CAATTG 1 cut(s) 60
MluCI AATT 5 cut(s) 60, 100, 217, 231, 352
MnlI CCTC 3 cut(s) 222, 246, 309
MroXI GAANNNNTTC 1 cut(s) 126
MseI TTAA 1 cut(s) 397
MunI CAATTG 1 cut(s) 60
Mva1269I GAATGC 3 cut(s) 81, 88, 376
MwoI GCNNNNNNNGC 1 cut(s) 325
NdeII GATC 2 cut(s) 266, 301
NlaIII CATG 4 cut(s) 134, 149, 292, 382
NspI RCATGY 1 cut(s) 382
PaeI GCATGC 1 cut(s) 382
PagI TCATGA 2 cut(s) 130, 145
PctI GAATGC 3 cut(s) 81, 88, 376
PdmI GAANNNNTTC 1 cut(s) 126
PfeI GAWTC 1 cut(s) 151
PkrI GCNGC 1 cut(s) 6
RsaI GTAC 1 cut(s) 296
RsaNI GTAC 1 cut(s) 295
SaqAI TTAA 1 cut(s) 397
SatI GCNGC 1 cut(s) 5
Sau3AI GATC 2 cut(s) 266, 301
SetI ASST 5 cut(s) 31, 184, 214, 280, 397
SfaNI GCATC 2 cut(s) 4, 151
SphI GCATGC 1 cut(s) 382
Sse9I AATT 5 cut(s) 60, 100, 217, 231, 352
TasI AATT 5 cut(s) 60, 100, 217, 231, 352
TatI WGTACW 1 cut(s) 294
TfiI GAWTC 1 cut(s) 151
Tru1I TTAA 1 cut(s) 397
Tru9I TTAA 1 cut(s) 397
TscAI CASTG 1 cut(s) 304
TseI GCWGC 1 cut(s) 4
TspDTI ATGAA 4 cut(s) 36, 81, 119, 180
TspRI CASTG 1 cut(s) 304
XagI CCTNNNNNAGG 1 cut(s) 309
XapI RAATTY 3 cut(s) 217, 231, 352
XceI RCATGY 1 cut(s) 382
XmnI GAANNNNTTC 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.