FvH4_7g25602

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000691
Physical Location & Seq
Forward (+)
19524449 .. 19525894
1446 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g25602.t1

Sequence Viewer

Length: 666 bp
ATGGCTCTCCGACTGAGAACCAACCACCGCACCCTAATCAACCCACCTCTCGCCCACCGCTTCTCCACCTCCTCCAAGTTCGCTGCCGTGGTCGCTGCCGTGGCACAAACCCGCAAGGCCCTTGCGAAATGTCGGATTCGATCCATGAGCCCAGATGAGCACGCTGAGATTGAGAGAATTTTTTTGGATTTACGGGAGGAGTTGAGGAAGGAGGAGGAGGAGAAATTCCAATATGGGTCAAACTCCTCATCATATGTCTCAGAGACGGCCCAATTCCGTGGCCAGACTGCGCACGATATTCTCAGAGCCTCGCAGCTCTCCTCCGCCTCCAAAGGACAAGGCAAGATCAATTCTTTGAGAACTGATAAGATGTCTTCTGCAGAAAAGCTGAAAATGGAGCATGACAAAGGTAGAGATGAATTTGAAATGTCACAGTCAGATTTTGTTTCTTCAAAATTACAAGGTGAAGTTGCTCCACCTCCTGGTACCGAAAAGCTTCCTAAGGTTTATAACCCTCAGATCAGTTGTTCCATTTGTAGAAAGAAGGGCCACAATAAGAGGACTTGCCCACTGAGACATCAGCAAGGTGGCAATGTGCAGCAAGAGTCTGTGAATGTGCAAGAGGAAGGTGACAATGTGAGGCAGCAAGAGCCTTTGAATGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

222

Amino Acids

24.89

Weight (kDa)

9.3

Isoelectric Point (pI)

62.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 510
Acc16I TGCGCA 1 cut(s) 291
Acc65I GGTACC 1 cut(s) 485
AccB1I GGYRCC 1 cut(s) 485
AccB7I CCANNNNNTGG 1 cut(s) 482
AciI CCGC 4 cut(s) 28, 58, 112, 324
AclWI GGATC 1 cut(s) 135
AcoI YGGCCR 1 cut(s) 280
AcsI RAATTY 3 cut(s) 177, 224, 419
AfaI GTAC 1 cut(s) 487
AfiI CCNNNNNNNGG 1 cut(s) 482
AgsI TTSAA 3 cut(s) 425, 453, 658
AjnI CCWGG 1 cut(s) 481
AluBI AGCT 3 cut(s) 316, 388, 496
AluI AGCT 3 cut(s) 316, 388, 496
Alw21I GWGCWC 1 cut(s) 162
Alw26I GTCTC 3 cut(s) 257, 262, 568
AlwI GGATC 1 cut(s) 135
AoxI GGCC 4 cut(s) 117, 267, 280, 547
ApeKI GCWGC 5 cut(s) 83, 95, 313, 598, 643
ApoI RAATTY 3 cut(s) 177, 224, 419
Asp700I GAANNNNTTC 1 cut(s) 495
Asp718I GGTACC 1 cut(s) 485
AspLEI GCGC 1 cut(s) 292
AspS9I GGNCC 3 cut(s) 118, 268, 547
AsuHPI GGTGA 2 cut(s) 476, 641
AxyI CCTNAGG 1 cut(s) 501
BalI TGGCCA 1 cut(s) 282
BanI GGYRCC 1 cut(s) 485
BanII GRGCYC 1 cut(s) 152
BbsI GAAGAC 1 cut(s) 366
Bbv12I GWGCWC 1 cut(s) 162
BbvI GCAGC 5 cut(s) 70, 82, 325, 610, 655
BceAI ACGGC 3 cut(s) 71, 83, 282
BciT130I CCWGG 1 cut(s) 483
BcoDI GTCTC 3 cut(s) 257, 262, 568
BfmI CTRYAG 1 cut(s) 378
BisI GCNGC 5 cut(s) 84, 96, 314, 599, 644
BlsI GCNGC 5 cut(s) 85, 97, 315, 600, 645
Bme1390I CCNGG 1 cut(s) 483
BmgT120I GGNCC 3 cut(s) 118, 268, 547
BmiI GGNNCC 1 cut(s) 487
BmrFI CCNGG 1 cut(s) 483
BpiI GAAGAC 1 cut(s) 366
BsaJI CCNNGG 3 cut(s) 87, 99, 277
BsaXI ACNNNNNCTCC 2 cut(s) 47, 77
Bsc4I CCNNNNNNNGG 1 cut(s) 482
Bse21I CCTNAGG 1 cut(s) 501
Bse3DI GCAATG 1 cut(s) 598
BseBI CCWGG 1 cut(s) 483
BseDI CCNNGG 3 cut(s) 87, 99, 277
BseLI CCNNNNNNNGG 1 cut(s) 482
BseMI GCAATG 1 cut(s) 598
BseMII CTCAG 6 cut(s) 5, 156, 273, 316, 530, 563
BseRI GAGGAG 7 cut(s) 61, 212, 227, 230, 233, 235, 310
BseXI GCAGC 5 cut(s) 70, 82, 325, 610, 655
BsgI GTGCAG 1 cut(s) 617
BshFI GGCC 4 cut(s) 119, 269, 282, 549
BshNI GGYRCC 1 cut(s) 485
BsiHKAI GWGCWC 1 cut(s) 162
BslI CCNNNNNNNGG 1 cut(s) 482
BsmAI GTCTC 3 cut(s) 257, 262, 568
BsmBI CGTCTC 1 cut(s) 257
BsnI GGCC 4 cut(s) 119, 269, 282, 549
Bsp1286I GDGCHC 2 cut(s) 152, 162
Bsp143I GATC 3 cut(s) 140, 345, 519
BspACI CCGC 4 cut(s) 28, 58, 112, 324
BspANI GGCC 4 cut(s) 119, 269, 282, 549
BspCNI CTCAG 6 cut(s) 6, 157, 272, 315, 529, 564
BspLI GGNNCC 1 cut(s) 487
BspMAI CTGCAG 1 cut(s) 382
BspPI GGATC 1 cut(s) 135
BspT107I GGYRCC 1 cut(s) 485
BsrDI GCAATG 1 cut(s) 598
BssECI CCNNGG 3 cut(s) 87, 99, 277
BssMI GATC 3 cut(s) 140, 345, 519
Bst2UI CCWGG 1 cut(s) 483
Bst4CI ACNGT 1 cut(s) 435
BstC8I GCNNGC 1 cut(s) 162
BstDEI CTNAG 7 cut(s) 14, 165, 259, 302, 501, 516, 572
BstDSI CCRYGG 3 cut(s) 87, 99, 277
BstHHI GCGC 1 cut(s) 292
BstKTI GATC 3 cut(s) 143, 348, 522
BstMAI GTCTC 3 cut(s) 257, 262, 568
BstMBI GATC 3 cut(s) 140, 345, 519
BstMWI GCNNNNNNNGC 3 cut(s) 92, 101, 649
BstNI CCWGG 1 cut(s) 483
BstSCI CCNGG 1 cut(s) 481
BstSFI CTRYAG 1 cut(s) 378
BstV1I GCAGC 5 cut(s) 70, 82, 325, 610, 655
BstV2I GAAGAC 1 cut(s) 366
BstXI CCANNNNNNTGG 1 cut(s) 278
Bsu36I CCTNAGG 1 cut(s) 501
BsuRI GGCC 4 cut(s) 119, 269, 282, 549
BtgI CCRYGG 3 cut(s) 87, 99, 277
BtsIMutI CAGTG 1 cut(s) 569
Cac8I GCNNGC 1 cut(s) 162
CfoI GCGC 1 cut(s) 292
Cfr13I GGNCC 3 cut(s) 118, 268, 547
Csp6I GTAC 1 cut(s) 486
CviAII CATG 2 cut(s) 145, 401
CviQI GTAC 1 cut(s) 486
DdeI CTNAG 7 cut(s) 14, 165, 259, 302, 501, 516, 572
DpnI GATC 3 cut(s) 142, 347, 521
DpnII GATC 3 cut(s) 140, 345, 519
EaeI YGGCCR 1 cut(s) 280
EciI GGCGGA 1 cut(s) 313
Eco24I GRGCYC 1 cut(s) 152
Eco81I CCTNAGG 1 cut(s) 501
EcoO109I RGGNCCY 1 cut(s) 118
EcoRII CCWGG 1 cut(s) 481
EcoT38I GRGCYC 1 cut(s) 152
Esp3I CGTCTC 1 cut(s) 257
FaeI CATG 2 cut(s) 148, 404
FaiI YATR 6 cut(s) 146, 234, 253, 255, 402, 510
FatI CATG 2 cut(s) 144, 400
FauI CCCGC 1 cut(s) 119
FauNDI CATATG 1 cut(s) 253
Fnu4HI GCNGC 5 cut(s) 84, 96, 314, 599, 644
FriOI GRGCYC 1 cut(s) 152
Fsp4HI GCNGC 5 cut(s) 84, 96, 314, 599, 644
FspI TGCGCA 1 cut(s) 291
GlaI GCGC 1 cut(s) 291
GluI GCNGC 5 cut(s) 84, 96, 314, 599, 644
HaeIII GGCC 4 cut(s) 119, 269, 282, 549
HhaI GCGC 1 cut(s) 292
Hin1II CATG 2 cut(s) 148, 404
Hin6I GCGC 1 cut(s) 290
HinP1I GCGC 1 cut(s) 290
HindIII AAGCTT 1 cut(s) 494
HinfI GANTC 2 cut(s) 136, 605
HphI GGTGA 2 cut(s) 476, 641
Hpy188I TCNGA 6 cut(s) 11, 135, 262, 305, 439, 519
HpyAV CCTTC 3 cut(s) 202, 538, 620
HpyCH4III ACNGT 1 cut(s) 435
HpyCH4V TGCA 3 cut(s) 380, 598, 619
HpyF10VI GCNNNNNNNGC 3 cut(s) 92, 101, 649
HpyF3I CTNAG 7 cut(s) 14, 165, 259, 302, 501, 516, 572
Hsp92II CATG 2 cut(s) 148, 404
HspAI GCGC 1 cut(s) 290
KpnI GGTACC 1 cut(s) 489
Kzo9I GATC 3 cut(s) 140, 345, 519
LmnI GCTCC 2 cut(s) 397, 478
LpnPI CCDG 4 cut(s) 165, 296, 468, 495
Lsp1109I GCAGC 5 cut(s) 70, 82, 325, 610, 655
MaeIII GTNAC 2 cut(s) 429, 629
MalI GATC 3 cut(s) 142, 347, 521
MboI GATC 3 cut(s) 140, 345, 519
MboII GAAGA 2 cut(s) 366, 441
MhlI GDGCHC 2 cut(s) 152, 162
MlsI TGGCCA 1 cut(s) 282
MluCI AATT 6 cut(s) 177, 224, 272, 349, 419, 455
MluNI TGGCCA 1 cut(s) 282
MlyI GAGTC 1 cut(s) 614
MmeI TCCRAC 2 cut(s) 34, 113
Mox20I TGGCCA 1 cut(s) 282
MroXI GAANNNNTTC 1 cut(s) 495
MscI TGGCCA 1 cut(s) 282
Msp20I TGGCCA 1 cut(s) 282
MspR9I CCNGG 1 cut(s) 483
MvaI CCWGG 1 cut(s) 483
MwoI GCNNNNNNNGC 3 cut(s) 92, 101, 649
NdeI CATATG 1 cut(s) 253
NdeII GATC 3 cut(s) 140, 345, 519
NlaIII CATG 2 cut(s) 148, 404
NlaIV GGNNCC 1 cut(s) 487
NmuCI GTSAC 2 cut(s) 429, 629
NsbI TGCGCA 1 cut(s) 291
PdmI GAANNNNTTC 1 cut(s) 495
PfeI GAWTC 1 cut(s) 136
PflMI CCANNNNNTGG 1 cut(s) 482
PkrI GCNGC 5 cut(s) 85, 97, 315, 600, 645
PleI GAGTC 1 cut(s) 613
PpsI GAGTC 1 cut(s) 613
PsiI TTATAA 1 cut(s) 510
Psp6I CCWGG 1 cut(s) 481
PspGI CCWGG 1 cut(s) 481
PspN4I GGNNCC 1 cut(s) 487
PspPI GGNCC 3 cut(s) 118, 268, 547
PstI CTGCAG 1 cut(s) 382
RsaI GTAC 1 cut(s) 487
RsaNI GTAC 1 cut(s) 486
SatI GCNGC 5 cut(s) 84, 96, 314, 599, 644
Sau3AI GATC 3 cut(s) 140, 345, 519
Sau96I GGNCC 3 cut(s) 118, 268, 547
SchI GAGTC 1 cut(s) 614
ScrFI CCNGG 1 cut(s) 483
SduI GDGCHC 2 cut(s) 152, 162
SfcI CTRYAG 1 cut(s) 378
Sse9I AATT 6 cut(s) 177, 224, 272, 349, 419, 455
SsiI CCGC 4 cut(s) 28, 58, 112, 324
StyD4I CCNGG 1 cut(s) 481
TaaI ACNGT 1 cut(s) 435
TaqI TCGA 1 cut(s) 139
TasI AATT 6 cut(s) 177, 224, 272, 349, 419, 455
TfiI GAWTC 1 cut(s) 136
TscAI CASTG 1 cut(s) 576
TseFI GTSAC 2 cut(s) 429, 629
TseI GCWGC 5 cut(s) 83, 95, 313, 598, 643
Tsp45I GTSAC 2 cut(s) 429, 629
TspDTI ATGAA 1 cut(s) 432
TspGWI ACGGA 1 cut(s) 266
TspRI CASTG 1 cut(s) 576
Van91I CCANNNNNTGG 1 cut(s) 482
XapI RAATTY 3 cut(s) 177, 224, 419
XmnI GAANNNNTTC 1 cut(s) 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.