RchiOBHm_Chr6g0255251

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000691
Physical Location & Seq
Reverse (-)
10607209 .. 10608401
1193 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22896

Sequence Viewer

Length: 657 bp
ATGCTTGCATATGAACCTGCAATAAACCCAATCCTTGGTGTTGATGAATGGGAGGTTGTTGAGAGGCCCATTTTACCTCCAAGGTACACTAGAGGACCTGGAAGGCCTAAGCTATCAAGAAACAAGGAACCAAGTGAGCAAGCACCACCTCCTGAAACAACAAAGTTGTCAAGAAGTTACCATCAGTCCATTACTTGTTCAGTTTGTAAAAAAGATGGCCATAATAAGAGGACTTGTTCAAGAAGACAGCAACAAGGCAATGATTCCCAAGCTGGGGTTCAACCATCAGAAACTGATGATCAGAGTGTCCACGTGGAGCAAGCTGAAAATGTTCAAAGTGATGTGCAAGTTGAAAGTGATATGCATTATGGATCAGTGCCGCAAACTGCAAATGTACCAACACCCTCAATTGTTGCAAGTGCTTCATCTCAACCGATGATCTCATCACCACCTCTACCTCAGTATTCTTTGCAGCCCACTGTTATCGGATCAACTCATACGTCCAAGACATTTGTATGTCCTAAGACAGGGATGCCATTCAAGACCAAGTCAATAGCACATAAGCCTAAGCCTAAACTTGTGATAGGAACAAGCACTAAAGCAAGAGCCCAACAAGGACCAAATGAGGGTTCCAACAAGAAAATTTGGAAGCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

218

Amino Acids

23.86

Weight (kDa)

9.37

Isoelectric Point (pI)

67.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 25
AccB7I CCANNNNNTGG 1 cut(s) 35
AciI CCGC 1 cut(s) 380
AclWI GGATC 2 cut(s) 379, 496
AcoI YGGCCR 1 cut(s) 217
AcsI RAATTY 1 cut(s) 642
AcvI CACGTG 1 cut(s) 313
AfaI GTAC 2 cut(s) 86, 396
AfiI CCNNNNNNNGG 5 cut(s) 35, 273, 274, 527, 626
AgsI TTSAA 5 cut(s) 240, 281, 335, 353, 541
AjnI CCWGG 1 cut(s) 97
AjuI GAANNNNNNNTTGG 4 cut(s) 261, 293, 613, 645
AluBI AGCT 3 cut(s) 112, 272, 323
AluI AGCT 3 cut(s) 112, 272, 323
AlwI GGATC 2 cut(s) 379, 496
AlwNI CAGNNNCTG 1 cut(s) 293
AoxI GGCC 3 cut(s) 65, 104, 217
ApeKI GCWGC 1 cut(s) 472
ApoI RAATTY 1 cut(s) 642
Asp700I GAANNNNTTC 1 cut(s) 330
AspS9I GGNCC 3 cut(s) 66, 95, 617
AsuHPI GGTGA 1 cut(s) 438
AvaII GGWCC 2 cut(s) 95, 617
BalI TGGCCA 1 cut(s) 219
BanII GRGCYC 1 cut(s) 610
BbrPI CACGTG 1 cut(s) 313
BbsI GAAGAC 1 cut(s) 250
BbvI GCAGC 1 cut(s) 484
BccI CCATC 3 cut(s) 189, 209, 292
BceAI ACGGC 1 cut(s) 637
BciT130I CCWGG 1 cut(s) 99
BclI TGATCA 1 cut(s) 298
BfaI CTAG 1 cut(s) 90
BfuAI ACCTGC 1 cut(s) 25
BisI GCNGC 2 cut(s) 380, 473
BlsI GCNGC 2 cut(s) 381, 474
Bme1390I CCNGG 1 cut(s) 99
Bme18I GGWCC 2 cut(s) 95, 617
BmgT120I GGNCC 3 cut(s) 66, 95, 617
BmiI GGNNCC 2 cut(s) 129, 631
BmrFI CCNGG 1 cut(s) 99
BmsI GCATC 1 cut(s) 522
BpiI GAAGAC 1 cut(s) 250
Bpu10I CCTNAGC 2 cut(s) 108, 567
BsaAI YACGTR 1 cut(s) 313
BsaJI CCNNGG 2 cut(s) 34, 80
Bsc4I CCNNNNNNNGG 5 cut(s) 35, 273, 274, 527, 626
Bse3DI GCAATG 1 cut(s) 265
BseBI CCWGG 1 cut(s) 99
BseDI CCNNGG 2 cut(s) 34, 80
BseGI GGATG 1 cut(s) 537
BseLI CCNNNNNNNGG 5 cut(s) 35, 273, 274, 527, 626
BseMI GCAATG 1 cut(s) 265
BseMII CTCAG 1 cut(s) 473
BseXI GCAGC 1 cut(s) 484
BseYI CCCAGC 1 cut(s) 272
BshFI GGCC 3 cut(s) 67, 106, 219
BslI CCNNNNNNNGG 5 cut(s) 35, 273, 274, 527, 626
BsnI GGCC 3 cut(s) 67, 106, 219
Bsp1286I GDGCHC 1 cut(s) 610
Bsp143I GATC 4 cut(s) 298, 371, 438, 488
BspACI CCGC 1 cut(s) 380
BspANI GGCC 3 cut(s) 67, 106, 219
BspCNI CTCAG 1 cut(s) 472
BspLI GGNNCC 2 cut(s) 129, 631
BspMI ACCTGC 1 cut(s) 25
BspPI GGATC 2 cut(s) 379, 496
BsrDI GCAATG 1 cut(s) 265
BssECI CCNNGG 2 cut(s) 34, 80
BssMI GATC 4 cut(s) 298, 371, 438, 488
BssT1I CCWWGG 2 cut(s) 34, 80
Bst2UI CCWGG 1 cut(s) 99
Bst4CI ACNGT 1 cut(s) 481
BstBAI YACGTR 1 cut(s) 313
BstC8I GCNNGC 3 cut(s) 6, 141, 321
BstDEI CTNAG 4 cut(s) 108, 459, 522, 567
BstENI CCTNNNNNAGG 1 cut(s) 525
BstF5I GGATG 1 cut(s) 537
BstKTI GATC 4 cut(s) 301, 374, 441, 491
BstMBI GATC 4 cut(s) 298, 371, 438, 488
BstNI CCWGG 1 cut(s) 99
BstSCI CCNGG 1 cut(s) 97
BstV1I GCAGC 1 cut(s) 484
BstV2I GAAGAC 1 cut(s) 250
BsuRI GGCC 3 cut(s) 67, 106, 219
BtsCI GGATG 1 cut(s) 537
BtsIMutI CAGTG 2 cut(s) 381, 477
BveI ACCTGC 1 cut(s) 25
Cac8I GCNNGC 3 cut(s) 6, 141, 321
CaiI CAGNNNCTG 1 cut(s) 293
Cfr13I GGNCC 3 cut(s) 66, 95, 617
Csp6I GTAC 2 cut(s) 85, 395
CviQI GTAC 2 cut(s) 85, 395
DdeI CTNAG 4 cut(s) 108, 459, 522, 567
DpnI GATC 4 cut(s) 300, 373, 440, 490
DpnII GATC 4 cut(s) 298, 371, 438, 488
EaeI YGGCCR 1 cut(s) 217
Eco130I CCWWGG 2 cut(s) 34, 80
Eco147I AGGCCT 1 cut(s) 106
Eco24I GRGCYC 1 cut(s) 610
Eco47I GGWCC 2 cut(s) 95, 617
Eco72I CACGTG 1 cut(s) 313
EcoNI CCTNNNNNAGG 1 cut(s) 525
EcoO109I RGGNCCY 1 cut(s) 95
EcoRII CCWGG 1 cut(s) 97
EcoT14I CCWWGG 2 cut(s) 34, 80
EcoT22I ATGCAT 1 cut(s) 366
EcoT38I GRGCYC 1 cut(s) 610
ErhI CCWWGG 2 cut(s) 34, 80
FaiI YATR 8 cut(s) 10, 12, 222, 362, 369, 498, 517, 561
FauNDI CATATG 1 cut(s) 10
FbaI TGATCA 1 cut(s) 298
Fnu4HI GCNGC 2 cut(s) 380, 473
FokI GGATG 1 cut(s) 544
FriOI GRGCYC 1 cut(s) 610
Fsp4HI GCNGC 2 cut(s) 380, 473
FspBI CTAG 1 cut(s) 90
GluI GCNGC 2 cut(s) 380, 473
GsaI CCCAGC 1 cut(s) 276
HaeIII GGCC 3 cut(s) 67, 106, 219
HinfI GANTC 1 cut(s) 263
HphI GGTGA 1 cut(s) 438
Hpy166II GTNNAC 2 cut(s) 87, 310
Hpy188I TCNGA 3 cut(s) 289, 303, 488
Hpy188III TCNNGA 5 cut(s) 117, 152, 171, 240, 541
Hpy8I GTNNAC 2 cut(s) 87, 310
HpyAV CCTTC 1 cut(s) 96
HpyCH4III ACNGT 1 cut(s) 481
HpyCH4IV ACGT 2 cut(s) 312, 500
HpyCH4V TGCA 7 cut(s) 8, 20, 346, 364, 389, 416, 472
HpyF3I CTNAG 4 cut(s) 108, 459, 522, 567
HpySE526I ACGT 2 cut(s) 312, 500
Ksp22I TGATCA 1 cut(s) 298
Kzo9I GATC 4 cut(s) 298, 371, 438, 488
LmnI GCTCC 1 cut(s) 316
LpnPI CCDG 6 cut(s) 30, 84, 111, 165, 258, 513
Lsp1109I GCAGC 1 cut(s) 484
LweI GCATC 1 cut(s) 522
MaeI CTAG 1 cut(s) 90
MaeII ACGT 2 cut(s) 312, 500
MaeIII GTNAC 1 cut(s) 176
MalI GATC 4 cut(s) 300, 373, 440, 490
MboI GATC 4 cut(s) 298, 371, 438, 488
MboII GAAGA 1 cut(s) 255
MfeI CAATTG 1 cut(s) 408
MhlI GDGCHC 1 cut(s) 610
MlsI TGGCCA 1 cut(s) 219
MluCI AATT 2 cut(s) 408, 642
MluNI TGGCCA 1 cut(s) 219
MmeI TCCRAC 1 cut(s) 657
Mox20I TGGCCA 1 cut(s) 219
Mph1103I ATGCAT 1 cut(s) 366
MroXI GAANNNNTTC 1 cut(s) 330
MscI TGGCCA 1 cut(s) 219
MslI CAYNNNNRTG 1 cut(s) 514
Msp20I TGGCCA 1 cut(s) 219
MspR9I CCNGG 1 cut(s) 99
MunI CAATTG 1 cut(s) 408
MvaI CCWGG 1 cut(s) 99
NdeI CATATG 1 cut(s) 10
NdeII GATC 4 cut(s) 298, 371, 438, 488
NlaIV GGNNCC 2 cut(s) 129, 631
NsiI ATGCAT 1 cut(s) 366
PceI AGGCCT 1 cut(s) 106
PdmI GAANNNNTTC 1 cut(s) 330
PfeI GAWTC 1 cut(s) 263
PflFI GACNNNGTC 1 cut(s) 547
PflMI CCANNNNNTGG 1 cut(s) 35
PkrI GCNGC 2 cut(s) 381, 474
PmaCI CACGTG 1 cut(s) 313
PmlI CACGTG 1 cut(s) 313
Ppu21I YACGTR 1 cut(s) 313
PpuMI RGGWCCY 1 cut(s) 95
Psp5II RGGWCCY 1 cut(s) 95
Psp6I CCWGG 1 cut(s) 97
PspCI CACGTG 1 cut(s) 313
PspFI CCCAGC 1 cut(s) 272
PspGI CCWGG 1 cut(s) 97
PspN4I GGNNCC 2 cut(s) 129, 631
PspPI GGNCC 3 cut(s) 66, 95, 617
PspPPI RGGWCCY 1 cut(s) 95
PstNI CAGNNNCTG 1 cut(s) 293
PsyI GACNNNGTC 1 cut(s) 547
RsaI GTAC 2 cut(s) 86, 396
RsaNI GTAC 2 cut(s) 85, 395
RseI CAYNNNNRTG 1 cut(s) 514
SatI GCNGC 2 cut(s) 380, 473
Sau3AI GATC 4 cut(s) 298, 371, 438, 488
Sau96I GGNCC 3 cut(s) 66, 95, 617
ScrFI CCNGG 1 cut(s) 99
SduI GDGCHC 1 cut(s) 610
SfaNI GCATC 1 cut(s) 522
SinI GGWCC 2 cut(s) 95, 617
SmiMI CAYNNNNRTG 1 cut(s) 514
Sse9I AATT 2 cut(s) 408, 642
SseBI AGGCCT 1 cut(s) 106
SsiI CCGC 1 cut(s) 380
SspMI CTAG 1 cut(s) 90
StuI AGGCCT 1 cut(s) 106
StyD4I CCNGG 1 cut(s) 97
StyI CCWWGG 2 cut(s) 34, 80
TaaI ACNGT 1 cut(s) 481
TaiI ACGT 2 cut(s) 315, 503
TasI AATT 2 cut(s) 408, 642
TauI GCSGC 1 cut(s) 382
TfiI GAWTC 1 cut(s) 263
TscAI CASTG 2 cut(s) 381, 484
TseI GCWGC 1 cut(s) 472
TspDTI ATGAA 3 cut(s) 27, 60, 414
TspRI CASTG 2 cut(s) 381, 484
Tth111I GACNNNGTC 1 cut(s) 547
Van91I CCANNNNNTGG 1 cut(s) 35
VpaK11BI GGWCC 2 cut(s) 95, 617
XagI CCTNNNNNAGG 1 cut(s) 525
XapI RAATTY 1 cut(s) 642
XmnI GAANNNNTTC 1 cut(s) 330
XspI CTAG 1 cut(s) 90
Zsp2I ATGCAT 1 cut(s) 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.