RLG00000019737

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000691
Physical Location & Seq
Reverse (-)
56129722 .. 56131535
1814 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019737

Sequence Viewer

Length: 759 bp
ATGAGAGGAAGAGACGACAATCTGAAAAATTTGATCGAGCAACGATGTCAGATGCGCCGAAAATGTGGAAATATTTCAGACTGGATGGAGAGCCACCAACAAGGCATGTGGGAAAGGGAGGCGGTGGAAGAAAGAAAAAGGAAGGAAAGAAGAGGATTTGGGGATGAGGCTAACTCGAGAGAAAACAAGAGTAGGTGGAGAGAAGTGAGGAAAGATGAGAGAGGTCCATCCTCGGTGTTAATGGATGGGAGGTTGTTGAGAAGCCCATTTTACCTCCAAGGTACACTAGAGGACCTGGAAGGCTTAAGTTATCAAGAAACAAGGAACCAGACATTGAGGGTTCAACCATCACAAACTGATGATCAAAGTGTGCATGTGGAGCAAGCTAAAAATGGTGAAACTGAGGTCAAAGCTAAAAATATTCAAAATGATGTGCAAGTTGAAAGTGATATTTATTCTGGATATGTGCAGCAAACTGAAAATGTTCCAACACCCTCAAATATTGCAGGTGCTTTATCTCATCCAGTGATCTCATCATTATCTCTGACTCAAGTTAACATTCAACCTCAGTCTTGTTCACAGCACACTGTTATTAGATTATCTCATAATTCTAAGACATTCGTATGTCCTAACATAAGGATGTTAATGAAGAGCAAGTCAGTAGCACAAAAGCCTAAACCTGTGACAAGAACCAACACAAGTGGAAGAGCCCAGCAAGGACCAATGGAGGTTTCCAACATGAAAATTTGGAAGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

253

Amino Acids

28.91

Weight (kDa)

9.41

Isoelectric Point (pI)

58.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 497
Acc36I ACCTGC 1 cut(s) 497
AciI CCGC 1 cut(s) 122
AcsI RAATTY 2 cut(s) 28, 744
AfaI GTAC 1 cut(s) 283
AflII CTTAAG 1 cut(s) 304
AgsI TTSAA 4 cut(s) 344, 425, 443, 563
AjnI CCWGG 1 cut(s) 294
AjuI GAANNNNNNNTTGG 2 cut(s) 715, 747
AluBI AGCT 2 cut(s) 386, 413
AluI AGCT 2 cut(s) 386, 413
Alw26I GTCTC 1 cut(s) 6
Ama87I CYCGRG 1 cut(s) 175
ApeKI GCWGC 1 cut(s) 469
ApoI RAATTY 2 cut(s) 28, 744
Asp700I GAANNNNTTC 2 cut(s) 73, 483
AspLEI GCGC 1 cut(s) 57
AspS9I GGNCC 3 cut(s) 224, 292, 719
AsuHPI GGTGA 1 cut(s) 407
AvaI CYCGRG 1 cut(s) 175
AvaII GGWCC 3 cut(s) 224, 292, 719
BanII GRGCYC 1 cut(s) 712
BbvI GCAGC 1 cut(s) 481
BccI CCATC 4 cut(s) 79, 235, 239, 355
BciT130I CCWGG 1 cut(s) 296
BclI TGATCA 1 cut(s) 361
BcoDI GTCTC 1 cut(s) 6
BfaI CTAG 1 cut(s) 287
BfrI CTTAAG 1 cut(s) 304
BfuAI ACCTGC 1 cut(s) 497
BisI GCNGC 1 cut(s) 470
BlsI GCNGC 1 cut(s) 471
Bme1390I CCNGG 1 cut(s) 296
Bme18I GGWCC 3 cut(s) 224, 292, 719
BmeT110I CYCGRG 1 cut(s) 175
BmgT120I GGNCC 3 cut(s) 224, 292, 719
BmiI GGNNCC 1 cut(s) 326
BmrFI CCNGG 1 cut(s) 296
BmsI GCATC 1 cut(s) 42
BplI GAGNNNNNCTC 2 cut(s) 158, 190
BpuEI CTTGAG 1 cut(s) 534
BsaJI CCNNGG 2 cut(s) 231, 277
Bse1I ACTGG 2 cut(s) 86, 524
BseBI CCWGG 1 cut(s) 296
BseDI CCNNGG 2 cut(s) 231, 277
BseGI GGATG 6 cut(s) 90, 169, 227, 250, 520, 645
BseMII CTCAG 2 cut(s) 393, 581
BseNI ACTGG 2 cut(s) 86, 524
BseXI GCAGC 1 cut(s) 481
BseYI CCCAGC 1 cut(s) 711
BsgI GTGCAG 1 cut(s) 488
BsiHKCI CYCGRG 1 cut(s) 175
BsmAI GTCTC 1 cut(s) 6
BsmBI CGTCTC 1 cut(s) 6
BsoBI CYCGRG 1 cut(s) 175
Bsp1286I GDGCHC 1 cut(s) 712
Bsp143I GATC 3 cut(s) 33, 361, 528
BspACI CCGC 1 cut(s) 122
BspCNI CTCAG 2 cut(s) 394, 580
BspLI GGNNCC 1 cut(s) 326
BspMI ACCTGC 1 cut(s) 497
BspQI GCTCTTC 2 cut(s) 644, 700
BspTI CTTAAG 1 cut(s) 304
BsrI ACTGG 2 cut(s) 86, 524
BssECI CCNNGG 2 cut(s) 231, 277
BssMI GATC 3 cut(s) 33, 361, 528
BssT1I CCWWGG 1 cut(s) 277
Bst2UI CCWGG 1 cut(s) 296
Bst4CI ACNGT 1 cut(s) 589
Bst6I CTCTTC 4 cut(s) 4, 145, 644, 700
BstAFI CTTAAG 1 cut(s) 304
BstC8I GCNNGC 1 cut(s) 384
BstDEI CTNAG 3 cut(s) 402, 567, 612
BstF5I GGATG 6 cut(s) 90, 169, 227, 250, 520, 645
BstHHI GCGC 1 cut(s) 57
BstKTI GATC 3 cut(s) 36, 364, 531
BstMAI GTCTC 1 cut(s) 6
BstMBI GATC 3 cut(s) 33, 361, 528
BstMWI GCNNNNNNNGC 1 cut(s) 379
BstNI CCWGG 1 cut(s) 296
BstNSI RCATGY 2 cut(s) 109, 377
BstSCI CCNGG 1 cut(s) 294
BstV1I GCAGC 1 cut(s) 481
BtsCI GGATG 6 cut(s) 90, 169, 227, 250, 520, 645
BtsIMutI CAGTG 2 cut(s) 531, 585
BveI ACCTGC 1 cut(s) 497
Cac8I GCNNGC 1 cut(s) 384
CfoI GCGC 1 cut(s) 57
Cfr13I GGNCC 3 cut(s) 224, 292, 719
Csp6I GTAC 1 cut(s) 282
CspCI CAANNNNNGTGG 4 cut(s) 89, 124, 682, 717
CviAII CATG 4 cut(s) 106, 374, 739, 756
CviJI RGCY 9 cut(s) 93, 170, 264, 303, 386, 413, 673, 710, 754
CviKI_1 RGCY 9 cut(s) 93, 170, 264, 303, 386, 413, 673, 710, 754
CviQI GTAC 1 cut(s) 282
DdeI CTNAG 3 cut(s) 402, 567, 612
DpnI GATC 3 cut(s) 35, 363, 530
DpnII GATC 3 cut(s) 33, 361, 528
Eam1104I CTCTTC 4 cut(s) 4, 145, 644, 700
EarI CTCTTC 4 cut(s) 4, 145, 644, 700
Eco130I CCWWGG 1 cut(s) 277
Eco24I GRGCYC 1 cut(s) 712
Eco47I GGWCC 3 cut(s) 224, 292, 719
Eco88I CYCGRG 1 cut(s) 175
EcoO109I RGGNCCY 1 cut(s) 292
EcoRII CCWGG 1 cut(s) 294
EcoT14I CCWWGG 1 cut(s) 277
EcoT38I GRGCYC 1 cut(s) 712
ErhI CCWWGG 1 cut(s) 277
Esp3I CGTCTC 1 cut(s) 6
FaeI CATG 4 cut(s) 109, 377, 742, 759
FaiI YATR 8 cut(s) 107, 375, 465, 606, 625, 635, 740, 757
FatI CATG 4 cut(s) 105, 373, 738, 755
FbaI TGATCA 1 cut(s) 361
Fnu4HI GCNGC 1 cut(s) 470
FokI GGATG 6 cut(s) 97, 176, 214, 257, 507, 652
FriOI GRGCYC 1 cut(s) 712
Fsp4HI GCNGC 1 cut(s) 470
FspBI CTAG 1 cut(s) 287
GlaI GCGC 1 cut(s) 56
GluI GCNGC 1 cut(s) 470
GsaI CCCAGC 1 cut(s) 715
HhaI GCGC 1 cut(s) 57
Hin1II CATG 4 cut(s) 109, 377, 742, 759
Hin6I GCGC 1 cut(s) 55
HinP1I GCGC 1 cut(s) 55
HincII GTYRAC 1 cut(s) 556
HindII GTYRAC 1 cut(s) 556
HinfI GANTC 1 cut(s) 547
HpaI GTTAAC 1 cut(s) 556
HphI GGTGA 1 cut(s) 407
Hpy166II GTNNAC 3 cut(s) 284, 556, 578
Hpy188I TCNGA 4 cut(s) 24, 51, 79, 546
Hpy188III TCNNGA 3 cut(s) 177, 314, 459
Hpy8I GTNNAC 3 cut(s) 284, 556, 578
HpyAV CCTTC 2 cut(s) 136, 293
HpyCH4III ACNGT 1 cut(s) 589
HpyCH4V TGCA 4 cut(s) 373, 436, 469, 506
HpyF10VI GCNNNNNNNGC 1 cut(s) 379
HpyF3I CTNAG 3 cut(s) 402, 567, 612
Hsp92II CATG 4 cut(s) 109, 377, 742, 759
HspAI GCGC 1 cut(s) 55
Ksp22I TGATCA 1 cut(s) 361
KspAI GTTAAC 1 cut(s) 556
Kzo9I GATC 3 cut(s) 33, 361, 528
LguI GCTCTTC 2 cut(s) 644, 700
LmnI GCTCC 1 cut(s) 379
LpnPI CCDG 9 cut(s) 67, 281, 308, 341, 444, 492, 537, 693, 725
Lsp1109I GCAGC 1 cut(s) 481
LweI GCATC 1 cut(s) 42
MaeI CTAG 1 cut(s) 287
MaeIII GTNAC 1 cut(s) 682
MalI GATC 3 cut(s) 35, 363, 530
MboI GATC 3 cut(s) 33, 361, 528
MboII GAAGA 5 cut(s) 21, 140, 162, 661, 717
MhlI GDGCHC 1 cut(s) 712
MluCI AATT 3 cut(s) 28, 607, 744
MlyI GAGTC 1 cut(s) 541
MmeI TCCRAC 2 cut(s) 512, 759
MroXI GAANNNNTTC 2 cut(s) 73, 483
MseI TTAA 4 cut(s) 239, 305, 555, 644
MslI CAYNNNNRTG 2 cut(s) 622, 638
MspCI CTTAAG 1 cut(s) 304
MspR9I CCNGG 1 cut(s) 296
MvaI CCWGG 1 cut(s) 296
MwoI GCNNNNNNNGC 1 cut(s) 379
NdeII GATC 3 cut(s) 33, 361, 528
NlaIII CATG 4 cut(s) 109, 377, 742, 759
NlaIV GGNNCC 1 cut(s) 326
NmuCI GTSAC 1 cut(s) 682
NspI RCATGY 2 cut(s) 109, 377
PaeR7I CTCGAG 1 cut(s) 175
PaqCI CACCTGC 1 cut(s) 497
PciSI GCTCTTC 2 cut(s) 644, 700
PdmI GAANNNNTTC 2 cut(s) 73, 483
PkrI GCNGC 1 cut(s) 471
PleI GAGTC 1 cut(s) 541
PpsI GAGTC 1 cut(s) 541
PpuMI RGGWCCY 1 cut(s) 292
Psp5II RGGWCCY 1 cut(s) 292
Psp6I CCWGG 1 cut(s) 294
PspFI CCCAGC 1 cut(s) 711
PspGI CCWGG 1 cut(s) 294
PspN4I GGNNCC 1 cut(s) 326
PspPI GGNCC 3 cut(s) 224, 292, 719
PspPPI RGGWCCY 1 cut(s) 292
RsaI GTAC 1 cut(s) 283
RsaNI GTAC 1 cut(s) 282
RseI CAYNNNNRTG 2 cut(s) 622, 638
SapI GCTCTTC 2 cut(s) 644, 700
SaqAI TTAA 4 cut(s) 239, 305, 555, 644
SatI GCNGC 1 cut(s) 470
Sau3AI GATC 3 cut(s) 33, 361, 528
Sau96I GGNCC 3 cut(s) 224, 292, 719
SchI GAGTC 1 cut(s) 541
ScrFI CCNGG 1 cut(s) 296
SduI GDGCHC 1 cut(s) 712
SfaNI GCATC 1 cut(s) 42
Sfr274I CTCGAG 1 cut(s) 175
SinI GGWCC 3 cut(s) 224, 292, 719
SlaI CTCGAG 1 cut(s) 175
SmiMI CAYNNNNRTG 2 cut(s) 622, 638
SmlI CTYRAG 3 cut(s) 175, 304, 549
SmoI CTYRAG 3 cut(s) 175, 304, 549
Sse9I AATT 3 cut(s) 28, 607, 744
SsiI CCGC 1 cut(s) 122
SspI AATATT 3 cut(s) 73, 421, 502
SspMI CTAG 1 cut(s) 287
StyD4I CCNGG 1 cut(s) 294
StyI CCWWGG 1 cut(s) 277
TaaI ACNGT 1 cut(s) 589
TaqI TCGA 2 cut(s) 36, 176
TasI AATT 3 cut(s) 28, 607, 744
Tru1I TTAA 4 cut(s) 239, 305, 555, 644
Tru9I TTAA 4 cut(s) 239, 305, 555, 644
TscAI CASTG 2 cut(s) 531, 592
TseFI GTSAC 1 cut(s) 682
TseI GCWGC 1 cut(s) 469
Tsp45I GTSAC 1 cut(s) 682
TspDTI ATGAA 2 cut(s) 662, 755
TspRI CASTG 2 cut(s) 531, 592
Vha464I CTTAAG 1 cut(s) 304
VpaK11BI GGWCC 3 cut(s) 224, 292, 719
XapI RAATTY 2 cut(s) 28, 744
XceI RCATGY 2 cut(s) 109, 377
XhoI CTCGAG 1 cut(s) 175
XmnI GAANNNNTTC 2 cut(s) 73, 483
XspI CTAG 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.