Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000691

Physical Location & Seq

Genomic Coordinates Reverse (-)

23953652 .. 23954584

Gene Structure 933 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028530

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGGGACTGAAGGTCCTTTTGATGGCTTTATATGGAGGGAGTATGACCAGACGGACATAGCAGGAGCTAAATACCCAAGAGTTTATTACGTATGCACTCCTCAAAAATATGGAGGTTGCATGGCCATAAAGGAAATGCAACGTTCAAATGATCAGAAAATCCTTAAAATTACTTATAGAGGAAGGCACACATGTACACTACCTTCCACCGGCATTGGAGGAAGGATCGATGGCAGTACCTCTGTGGCCAGTGGTGCATCAAGTGTCCATGACCAAGTTGTCGAATTGCCAAGCTCACCAGGAACCAATGGTGATGGAGGAAATGTAAGCTCACTAGATATGGATGTCAATGATATGGAAGATAGAGACATGGCTAGCTGTTTATGCCCATTACGGTGGTGTTGGAGGCTTTGGGCTTCAATTACCTCAAGAAAAGGACCCGAGAAAGAAACGATGGGGCTCTGTCACTCTGATGATGATCAACCAAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001067 GO:0001101 GO:0002376 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009636 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009816 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010035 GO:0010150 GO:0010193 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042542 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045893 GO:0045935 GO:0046677 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048583 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0090693 GO:0097159 GO:0098542 GO:0099402 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

165

Amino Acids

18.08

Weight (kDa)

5.59

Isoelectric Point (pI)

47.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	8 - 65	3.7e-18	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000691)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g09131 FvH4_5g29241 FvH4_5g38700 FvH4_6g10171 FvH4_6g31671 FvH4_7g25602
rosa_chinensis	RchiOBHm_Chr3g0477061 RchiOBHm_Chr5g0037961 RchiOBHm_Chr5g0045201 RchiOBHm_Chr5g0075681 RchiOBHm_Chr6g0255251 RchiOBHm_Chr6g0276481 RchiOBHm_Chr7g0188661 RchiOBHm_Chr7g0212591
rosa_laevigata	RLG00000014285 RLG00000019737 RLG00000020231 RLG00000027687 RLG00000028530 RLG00000029679
rosa_multiflora	Rmu_sc0008577.1_g000011 Rmu_sc0010616.1_g000005 Rmu_ssc0000255.1_g000048
rosa_roxburghii	Rroxscaffold_1G00039250 Rroxscaffold_2G00087850 Rroxscaffold_3G00231610 Rroxscaffold_3G00276260 Rroxscaffold_3G00276270
rosa_rugosa	Rorug01G0345200.1 Rorug02G0070900 Rorug03G0279300
rosa_samantha	Rh1AG087400 Rh1AG177300 Rh1BG218300 Rh1CG085600 Rh1CG164600 Rh1CG231700 Rh1CG234900 Rh1DG092000 Rh1DG244700 Rh3AG293200 Rh3BG241800 Rh3CG102600 Rh3CG163100 Rh3CG278400 Rh3DG163700 Rh3DG208200 Rh4AG190800 Rh4DG072100 Rh5AG271800 Rh5BG011900 Rh5BG311500 Rh5CG245000 Rh5CG402400 Rh5DG009700 Rh5DG321700 Rh6BG065700 Rh6BG431400 Rh6CG449000 Rh6DG208800 Rh7AG267300 Rh7BG437400 Rh7CG285800 Rh7CG418900 Rh7CG450100 Rh7DG275300
rosa_wichuraiana	Rw0G005630 Rw0G009300 Rw0G023360 Rw1G017030 Rw1G017050 Rw4G035810 Rw6G031650 Rw7G008390 Rw7G022990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	278
AclI	AACGTT	1 cut(s)	142
AclWI	GGATC	1 cut(s)	233
AcoI	YGGCCR	2 cut(s)	123, 246
AcuI	CTGAAG	1 cut(s)	30
AfaI	GTAC	2 cut(s)	196, 238
AfiI	CCNNNNNNNGG	2 cut(s)	23, 209
AflIII	ACRYGT	1 cut(s)	191
AgsI	TTSAA	2 cut(s)	147, 420
AhdI	GACNNNNNGTC	1 cut(s)	12
AjnI	CCWGG	1 cut(s)	298
AluBI	AGCT	4 cut(s)	68, 294, 330, 378
AluI	AGCT	4 cut(s)	68, 294, 330, 378
Alw26I	GTCTC	1 cut(s)	360
AlwI	GGATC	1 cut(s)	233
Ama87I	CYCGRG	1 cut(s)	440
AoxI	GGCC	2 cut(s)	123, 246
AspS9I	GGNCC	2 cut(s)	14, 437
AsuHPI	GGTGA	2 cut(s)	288, 323
AsuNHI	GCTAGC	1 cut(s)	374
AvaI	CYCGRG	1 cut(s)	440
AvaII	GGWCC	2 cut(s)	14, 437
BalI	TGGCCA	2 cut(s)	125, 248
BanII	GRGCYC	1 cut(s)	462
BarI	GAAGNNNNNNTAC	2 cut(s)	187, 219
BccI	CCATC	4 cut(s)	17, 224, 308, 448
BciT130I	CCWGG	1 cut(s)	300
BclI	TGATCA	2 cut(s)	151, 478
BcoDI	GTCTC	1 cut(s)	360
BfaI	CTAG	2 cut(s)	335, 375
Bme1390I	CCNGG	1 cut(s)	300
Bme18I	GGWCC	2 cut(s)	14, 437
BmeRI	GACNNNNNGTC	1 cut(s)	12
BmeT110I	CYCGRG	1 cut(s)	440
BmgT120I	GGNCC	2 cut(s)	14, 437
BmiI	GGNNCC	2 cut(s)	304, 439
BmrFI	CCNGG	1 cut(s)	300
BmsI	GCATC	1 cut(s)	266
BmtI	GCTAGC	1 cut(s)	378
BpuEI	CTTGAG	1 cut(s)	412
Bsa29I	ATCGAT	1 cut(s)	228
BsaAI	YACGTR	1 cut(s)	91
BsaBI	GATNNNNATC	1 cut(s)	477
BsaXI	ACNNNNNCTCC	2 cut(s)	309, 339
Bsc4I	CCNNNNNNNGG	2 cut(s)	23, 209
Bse118I	RCCGGY	1 cut(s)	209
Bse1I	ACTGG	1 cut(s)	249
Bse8I	GATNNNNATC	1 cut(s)	477
BseBI	CCWGG	1 cut(s)	300
BseCI	ATCGAT	1 cut(s)	228
BseGI	GGATG	1 cut(s)	349
BseJI	GATNNNNATC	1 cut(s)	477
BseLI	CCNNNNNNNGG	2 cut(s)	23, 209
BseNI	ACTGG	1 cut(s)	249
BseRI	GAGGAG	1 cut(s)	90
BshFI	GGCC	2 cut(s)	125, 248
BshVI	ATCGAT	1 cut(s)	228
BsiHKCI	CYCGRG	1 cut(s)	440
BsiSI	CCGG	1 cut(s)	210
BslFI	GGGAC	1 cut(s)	19
BslI	CCNNNNNNNGG	2 cut(s)	23, 209
BsmAI	GTCTC	1 cut(s)	360
BsmFI	GGGAC	1 cut(s)	19
BsnI	GGCC	2 cut(s)	125, 248
BsoBI	CYCGRG	1 cut(s)	440
Bsp1286I	GDGCHC	1 cut(s)	462
Bsp1407I	TGTACA	1 cut(s)	194
Bsp143I	GATC	3 cut(s)	151, 225, 478
BspANI	GGCC	2 cut(s)	125, 248
BspDI	ATCGAT	1 cut(s)	228
BspLI	GGNNCC	2 cut(s)	304, 439
BspOI	GCTAGC	1 cut(s)	378
BspPI	GGATC	1 cut(s)	233
BsrFI	RCCGGY	1 cut(s)	209
BsrGI	TGTACA	1 cut(s)	194
BsrI	ACTGG	1 cut(s)	249
BssAI	RCCGGY	1 cut(s)	209
BssMI	GATC	3 cut(s)	151, 225, 478
Bst2UI	CCWGG	1 cut(s)	300
Bst4CI	ACNGT	1 cut(s)	396
BstAUI	TGTACA	1 cut(s)	194
BstBAI	YACGTR	1 cut(s)	91
BstC8I	GCNNGC	1 cut(s)	376
BstF5I	GGATG	1 cut(s)	349
BstKTI	GATC	3 cut(s)	154, 228, 481
BstMAI	GTCTC	1 cut(s)	360
BstMBI	GATC	3 cut(s)	151, 225, 478
BstMWI	GCNNNNNNNGC	2 cut(s)	254, 384
BstNI	CCWGG	1 cut(s)	300
BstNSI	RCATGY	1 cut(s)	195
BstSCI	CCNGG	1 cut(s)	298
BstSNI	TACGTA	1 cut(s)	91
BstXI	CCANNNNNNTGG	1 cut(s)	396
Bsu15I	ATCGAT	1 cut(s)	228
BsuRI	GGCC	2 cut(s)	125, 248
BsuTUI	ATCGAT	1 cut(s)	228
BtsCI	GGATG	1 cut(s)	349
BtsIMutI	CAGTG	1 cut(s)	256
Cac8I	GCNNGC	1 cut(s)	376
Cfr10I	RCCGGY	1 cut(s)	209
Cfr13I	GGNCC	2 cut(s)	14, 437
ClaI	ATCGAT	1 cut(s)	228
Csp6I	GTAC	2 cut(s)	195, 237
CspCI	CAANNNNNGTGG	2 cut(s)	196, 231
CviAII	CATG	4 cut(s)	121, 192, 269, 370
CviQI	GTAC	2 cut(s)	195, 237
DpnI	GATC	3 cut(s)	153, 227, 480
DpnII	GATC	3 cut(s)	151, 225, 478
DrdI	GACNNNNNNGTC	1 cut(s)	278
DriI	GACNNNNNGTC	1 cut(s)	12
DseDI	GACNNNNNNGTC	1 cut(s)	278
EaeI	YGGCCR	2 cut(s)	123, 246
Eam1105I	GACNNNNNGTC	1 cut(s)	12
Eco105I	TACGTA	1 cut(s)	91
Eco24I	GRGCYC	1 cut(s)	462
Eco47I	GGWCC	2 cut(s)	14, 437
Eco57I	CTGAAG	1 cut(s)	30
Eco88I	CYCGRG	1 cut(s)	440
EcoO109I	RGGNCCY	2 cut(s)	14, 437
EcoRII	CCWGG	1 cut(s)	298
EcoT38I	GRGCYC	1 cut(s)	462
FaeI	CATG	4 cut(s)	124, 195, 272, 373
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	4 cut(s)	120, 191, 268, 369
FbaI	TGATCA	2 cut(s)	151, 478
FokI	GGATG	1 cut(s)	356
FriOI	GRGCYC	1 cut(s)	462
FspBI	CTAG	2 cut(s)	335, 375
HaeIII	GGCC	2 cut(s)	125, 248
HapII	CCGG	1 cut(s)	210
Hin1II	CATG	4 cut(s)	124, 195, 272, 373
HpaII	CCGG	1 cut(s)	210
HphI	GGTGA	2 cut(s)	288, 323
Hpy166II	GTNNAC	1 cut(s)	197
Hpy188I	TCNGA	2 cut(s)	156, 472
Hpy188III	TCNNGA	1 cut(s)	429
Hpy8I	GTNNAC	1 cut(s)	197
HpyAV	CCTTC	4 cut(s)	5, 177, 213, 216
HpyCH4III	ACNGT	1 cut(s)	396
HpyCH4IV	ACGT	2 cut(s)	90, 142
HpyCH4V	TGCA	4 cut(s)	96, 120, 139, 257
HpyF10VI	GCNNNNNNNGC	2 cut(s)	254, 384
HpySE526I	ACGT	2 cut(s)	90, 142
Hsp92II	CATG	4 cut(s)	124, 195, 272, 373
Ksp22I	TGATCA	2 cut(s)	151, 478
Kzo9I	GATC	3 cut(s)	151, 225, 478
LmnI	GCTCC	1 cut(s)	65
LpnPI	CCDG	6 cut(s)	48, 62, 223, 262, 285, 312
LweI	GCATC	1 cut(s)	266
MaeI	CTAG	2 cut(s)	335, 375
MaeII	ACGT	2 cut(s)	90, 142
MaeIII	GTNAC	1 cut(s)	464
MalI	GATC	3 cut(s)	153, 227, 480
MboI	GATC	3 cut(s)	151, 225, 478
MboII	GAAGA	1 cut(s)	371
MhlI	GDGCHC	1 cut(s)	462
MlsI	TGGCCA	2 cut(s)	125, 248
MluCI	AATT	3 cut(s)	168, 284, 420
MluNI	TGGCCA	2 cut(s)	125, 248
MmeI	TCCRAC	1 cut(s)	383
MnlI	CCTC	9 cut(s)	30, 107, 111, 173, 212, 250, 311, 399, 436
Mox20I	TGGCCA	2 cut(s)	125, 248
MscI	TGGCCA	2 cut(s)	125, 248
MseI	TTAA	1 cut(s)	165
MslI	CAYNNNNRTG	2 cut(s)	394, 471
Msp20I	TGGCCA	2 cut(s)	125, 248
MspI	CCGG	1 cut(s)	210
MspR9I	CCNGG	1 cut(s)	300
MvaI	CCWGG	1 cut(s)	300
MwoI	GCNNNNNNNGC	2 cut(s)	254, 384
NdeII	GATC	3 cut(s)	151, 225, 478
NheI	GCTAGC	1 cut(s)	374
NlaIII	CATG	4 cut(s)	124, 195, 272, 373
NlaIV	GGNNCC	2 cut(s)	304, 439
NmuCI	GTSAC	1 cut(s)	464
NspI	RCATGY	1 cut(s)	195
PciI	ACATGT	1 cut(s)	191
Ppu21I	YACGTR	1 cut(s)	91
PpuMI	RGGWCCY	2 cut(s)	14, 437
PscI	ACATGT	1 cut(s)	191
Psp1406I	AACGTT	1 cut(s)	142
Psp5II	RGGWCCY	2 cut(s)	14, 437
Psp6I	CCWGG	1 cut(s)	298
PspGI	CCWGG	1 cut(s)	298
PspN4I	GGNNCC	2 cut(s)	304, 439
PspPI	GGNCC	2 cut(s)	14, 437
PspPPI	RGGWCCY	2 cut(s)	14, 437
RsaI	GTAC	2 cut(s)	196, 238
RsaNI	GTAC	2 cut(s)	195, 237
RseI	CAYNNNNRTG	2 cut(s)	394, 471
SaqAI	TTAA	1 cut(s)	165
Sau3AI	GATC	3 cut(s)	151, 225, 478
Sau96I	GGNCC	2 cut(s)	14, 437
ScrFI	CCNGG	1 cut(s)	300
SduI	GDGCHC	1 cut(s)	462
SfaNI	GCATC	1 cut(s)	266
SinI	GGWCC	2 cut(s)	14, 437
SmiMI	CAYNNNNRTG	2 cut(s)	394, 471
SmlI	CTYRAG	1 cut(s)	427
SmoI	CTYRAG	1 cut(s)	427
SnaBI	TACGTA	1 cut(s)	91
Sse9I	AATT	3 cut(s)	168, 284, 420
SspMI	CTAG	2 cut(s)	335, 375
StyD4I	CCNGG	1 cut(s)	298
TaaI	ACNGT	1 cut(s)	396
TaiI	ACGT	2 cut(s)	93, 145
TaqI	TCGA	2 cut(s)	228, 282
TasI	AATT	3 cut(s)	168, 284, 420
TatI	WGTACW	1 cut(s)	194
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TscAI	CASTG	1 cut(s)	256
TseFI	GTSAC	1 cut(s)	464
Tsp45I	GTSAC	1 cut(s)	464
TspGWI	ACGGA	1 cut(s)	68
TspRI	CASTG	1 cut(s)	256
VpaK11BI	GGWCC	2 cut(s)	14, 437
XceI	RCATGY	1 cut(s)	195
XspI	CTAG	2 cut(s)	335, 375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.