Rh1CG231700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000691
Physical Location & Seq
Forward (+)
48780866 .. 48783232
2367 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG231700.1

Sequence Viewer

Length: 336 bp
ATGCAGCAAGGCGATGCAAATGAAAAAGGTTCTCAAAATGTTCAGCAAGATGGCAATGCAAATGATGAACATAGAATGCAGAATGCTCAGCAATGTGGCATTTCGAATGGACATAGTTCTGAAAATGTTCATGATGAGGGAGAGTGGCCTTCAGTTATCCCAAATCTCAAAGTGAATAGAAGTCCCTCCCAGCTAATTATTGATGGCAGAATCAACCAAAAGGTTAACAATGCAGGGATATTAGGGGCTATAGTTGATGCTGATGGTCTTAAAGCTGCAATTGCATCTGGTGCTGGACCAGGACAGATTGATTGGAAAAATGAATCTGTTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

11.79

Weight (kDa)

4.79

Isoelectric Point (pI)

21.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 135
AjnI CCWGG 1 cut(s) 298
AluBI AGCT 2 cut(s) 193, 275
AluI AGCT 2 cut(s) 193, 275
AoxI GGCC 1 cut(s) 146
ApeKI GCWGC 2 cut(s) 4, 275
Asp700I GAANNNNTTC 1 cut(s) 126
AspS9I GGNCC 1 cut(s) 296
AsuII TTCGAA 1 cut(s) 104
AvaII GGWCC 1 cut(s) 296
BbvI GCAGC 2 cut(s) 16, 262
BccI CCATC 3 cut(s) 44, 197, 257
BciT130I CCWGG 1 cut(s) 300
BfmI CTRYAG 1 cut(s) 249
BisI GCNGC 2 cut(s) 5, 276
BlpI GCTNAGC 1 cut(s) 87
BlsI GCNGC 2 cut(s) 6, 277
Bme1390I CCNGG 1 cut(s) 300
Bme18I GGWCC 1 cut(s) 296
BmgT120I GGNCC 1 cut(s) 296
BmrFI CCNGG 1 cut(s) 300
BmsI GCATC 3 cut(s) 4, 247, 293
Bpu1102I GCTNAGC 1 cut(s) 87
Bpu14I TTCGAA 1 cut(s) 104
Bse3DI GCAATG 2 cut(s) 61, 98
BseBI CCWGG 1 cut(s) 300
BseMI GCAATG 2 cut(s) 61, 98
BseMII CTCAG 1 cut(s) 101
BseXI GCAGC 2 cut(s) 16, 262
BseYI CCCAGC 1 cut(s) 189
BshFI GGCC 1 cut(s) 148
BslFI GGGAC 1 cut(s) 168
BsmFI GGGAC 1 cut(s) 168
BsmI GAATGC 2 cut(s) 81, 88
BsnI GGCC 1 cut(s) 148
Bsp119I TTCGAA 1 cut(s) 104
Bsp1720I GCTNAGC 1 cut(s) 87
BspANI GGCC 1 cut(s) 148
BspCNI CTCAG 1 cut(s) 100
BspHI TCATGA 1 cut(s) 130
BspT104I TTCGAA 1 cut(s) 104
BsrDI GCAATG 2 cut(s) 61, 98
Bst2UI CCWGG 1 cut(s) 300
BstAPI GCANNNNNTGC 1 cut(s) 290
BstBI TTCGAA 1 cut(s) 104
BstDEI CTNAG 1 cut(s) 87
BstMWI GCNNNNNNNGC 2 cut(s) 281, 290
BstNI CCWGG 1 cut(s) 300
BstSCI CCNGG 1 cut(s) 298
BstSFI CTRYAG 1 cut(s) 249
BstV1I GCAGC 2 cut(s) 16, 262
BsuRI GGCC 1 cut(s) 148
BtgZI GCGATG 1 cut(s) 27
CciI TCATGA 1 cut(s) 130
Cfr13I GGNCC 1 cut(s) 296
CviAII CATG 1 cut(s) 131
CviJI RGCY 4 cut(s) 148, 193, 248, 275
CviKI_1 RGCY 4 cut(s) 148, 193, 248, 275
DdeI CTNAG 1 cut(s) 87
Eco47I GGWCC 1 cut(s) 296
Eco57I CTGAAG 1 cut(s) 135
EcoRII CCWGG 1 cut(s) 298
FaeI CATG 1 cut(s) 134
FaiI YATR 5 cut(s) 72, 114, 132, 251, 332
FaqI GGGAC 1 cut(s) 168
FatI CATG 1 cut(s) 130
Fnu4HI GCNGC 2 cut(s) 5, 276
Fsp4HI GCNGC 2 cut(s) 5, 276
GluI GCNGC 2 cut(s) 5, 276
GsaI CCCAGC 1 cut(s) 193
HaeIII GGCC 1 cut(s) 148
Hin1II CATG 1 cut(s) 134
HincII GTYRAC 1 cut(s) 226
HindII GTYRAC 1 cut(s) 226
HinfI GANTC 2 cut(s) 210, 323
HpaI GTTAAC 1 cut(s) 226
Hpy166II GTNNAC 1 cut(s) 226
Hpy188I TCNGA 1 cut(s) 121
Hpy188III TCNNGA 1 cut(s) 131
Hpy8I GTNNAC 1 cut(s) 226
HpyAV CCTTC 1 cut(s) 159
HpyCH4V TGCA 7 cut(s) 4, 17, 59, 79, 233, 278, 284
HpyF10VI GCNNNNNNNGC 2 cut(s) 281, 290
HpyF3I CTNAG 1 cut(s) 87
Hsp92II CATG 1 cut(s) 134
KspAI GTTAAC 1 cut(s) 226
LpnPI CCDG 6 cut(s) 203, 219, 273, 279, 285, 312
Lsp1109I GCAGC 2 cut(s) 16, 262
LweI GCATC 3 cut(s) 4, 247, 293
MfeI CAATTG 1 cut(s) 279
MluCI AATT 2 cut(s) 195, 279
MnlI CCTC 2 cut(s) 130, 196
MroXI GAANNNNTTC 1 cut(s) 126
MseI TTAA 2 cut(s) 225, 270
MspR9I CCNGG 1 cut(s) 300
MunI CAATTG 1 cut(s) 279
Mva1269I GAATGC 2 cut(s) 81, 88
MvaI CCWGG 1 cut(s) 300
MwoI GCNNNNNNNGC 2 cut(s) 281, 290
NlaIII CATG 1 cut(s) 134
NspV TTCGAA 1 cut(s) 104
PagI TCATGA 1 cut(s) 130
PctI GAATGC 2 cut(s) 81, 88
PdmI GAANNNNTTC 1 cut(s) 126
PfeI GAWTC 2 cut(s) 210, 323
PkrI GCNGC 2 cut(s) 6, 277
Psp6I CCWGG 1 cut(s) 298
PspFI CCCAGC 1 cut(s) 189
PspGI CCWGG 1 cut(s) 298
PspPI GGNCC 1 cut(s) 296
SaqAI TTAA 2 cut(s) 225, 270
SatI GCNGC 2 cut(s) 5, 276
Sau96I GGNCC 1 cut(s) 296
ScrFI CCNGG 1 cut(s) 300
SetI ASST 4 cut(s) 31, 195, 225, 277
SfaNI GCATC 3 cut(s) 4, 247, 293
SfcI CTRYAG 1 cut(s) 249
SfuI TTCGAA 1 cut(s) 104
SgeI CNNG 9 cut(s) 20, 59, 143, 202, 246, 300, 306, 311, 312
SinI GGWCC 1 cut(s) 296
Sse9I AATT 2 cut(s) 195, 279
StyD4I CCNGG 1 cut(s) 298
TaqI TCGA 1 cut(s) 104
TasI AATT 2 cut(s) 195, 279
TfiI GAWTC 2 cut(s) 210, 323
Tru1I TTAA 2 cut(s) 225, 270
Tru9I TTAA 2 cut(s) 225, 270
TseI GCWGC 2 cut(s) 4, 275
TspDTI ATGAA 4 cut(s) 36, 81, 119, 336
VpaK11BI GGWCC 1 cut(s) 296
XmnI GAANNNNTTC 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.