Rh6BG065700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000691
Physical Location & Seq
Forward (+)
10179681 .. 10181710
2030 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG065700.1

Sequence Viewer

Length: 987 bp
ATGGAGAGCCACCCACCTACAAAGAGTAAAGATGGTGAAGACTTTCTGCCAATTAGGGATGAAAAAGAAGTTAAACAAATGTTGGCATTTGTTCAAAGTTCCAGGGTGCTGCAATTATATATTGTAGGTGGAGGGGTGAGAAAAAAAGAAGAAGCAGAACTTGAAGATGAACCTGGGAATAAAGCTGCACCTATTTGTCATGACAAGTACATTGGGAATGTGATTGAAGACATAGTAGAGGAGGATGGTATGAGTAGTCATGGGGTAAAAGATAAAGGAAAAAGAACCAAGGCTGGTGAGAAAAGAAAGGCAATTAAGAAGGGAAAGAGTAGTGGTTTGAACGACAACTCCAACCATTTTGCAAAGGTGGCTATGAACAATGATGTTGAGGTTACAAGTAGAGGTACCGCAAAGTCACCTAGGTTGAAGCAGAAAGCTAGGAGAATTAAGAAGAATGAGGTATATGACACAAGGTTTAAAGGAGAGTTCAACTATGATATTGATGAGTTTCAAGCTGATGGTGAATCTTCTGATAATGATGATCCCACATATGAAGAAATTATAGATAGTGACTATGAGCTCCAAGATGAGGATGATGAAGTGTTGTTCAGGGCAAATGTTGATGTTAGTGGTGTTAATGTTGGTGAATGGGAAGAAATGGGCTATGAAGGAATTATATCAGATGGTGAGGGTGAGAATTCTGAGAAGTTTGAAAGCGGGGAATCATCATCATCTAGTGAAGATGAAGTAAACTTAGATGTCAAAGCACCTTTTGTTTCATCGCAACCACTTCCATCACCTCTAAATTTCTCACAAGAAATTCCTCCAGTTCAAAGAAGTTCTCAACCTATTGGATCATTCTTAGCTTCTTTCTCCATGATGTACACTGATCCTATAACAGGGAGGCCAAAGAAGCAAGTTGCATTCAAAAATCCTAAGAATTCTATGTCAACTGAGAATGCAAGCAAGCCTATTTGGAGACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

328

Amino Acids

36.57

Weight (kDa)

4.84

Isoelectric Point (pI)

49.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 404
AccB1I GGYRCC 1 cut(s) 404
AciI CCGC 2 cut(s) 408, 717
AclWI GGATC 3 cut(s) 536, 862, 884
AcsI RAATTY 4 cut(s) 697, 805, 819, 940
AfaI GTAC 3 cut(s) 209, 406, 884
AfiI CCNNNNNNNGG 2 cut(s) 589, 899
AjnI CCWGG 2 cut(s) 101, 172
AloI GAACNNNNNNTCC 2 cut(s) 332, 364
AluBI AGCT 5 cut(s) 185, 437, 515, 580, 866
AluI AGCT 5 cut(s) 185, 437, 515, 580, 866
Alw21I GWGCWC 1 cut(s) 582
Alw26I GTCTC 1 cut(s) 973
AlwI GGATC 3 cut(s) 536, 862, 884
AoxI GGCC 1 cut(s) 905
ApeKI GCWGC 2 cut(s) 109, 185
ApoI RAATTY 4 cut(s) 697, 805, 819, 940
Asp700I GAANNNNTTC 1 cut(s) 42
Asp718I GGTACC 1 cut(s) 404
AspA2I CCTAGG 1 cut(s) 419
AsuHPI GGTGA 9 cut(s) 47, 148, 308, 408, 533, 656, 698, 704, 789
AvrII CCTAGG 1 cut(s) 419
BanI GGYRCC 1 cut(s) 404
BanII GRGCYC 1 cut(s) 582
BbsI GAAGAC 2 cut(s) 45, 234
Bbv12I GWGCWC 1 cut(s) 582
BbvI GCAGC 2 cut(s) 96, 172
BccI CCATC 5 cut(s) 26, 239, 512, 677, 802
BciT130I CCWGG 2 cut(s) 103, 174
BcoDI GTCTC 1 cut(s) 973
BfaI CTAG 3 cut(s) 420, 438, 735
BisI GCNGC 2 cut(s) 110, 186
BlnI CCTAGG 1 cut(s) 419
BlsI GCNGC 2 cut(s) 111, 187
Bme1390I CCNGG 2 cut(s) 103, 174
BmiI GGNNCC 1 cut(s) 406
BmrFI CCNGG 2 cut(s) 103, 174
BpiI GAAGAC 2 cut(s) 45, 234
BpmI CTGGAG 1 cut(s) 810
BsaI GGTCTC 1 cut(s) 973
BsaJI CCNNGG 4 cut(s) 102, 173, 288, 419
BsaXI ACNNNNNCTCC 2 cut(s) 332, 362
Bsc4I CCNNNNNNNGG 2 cut(s) 589, 899
Bse1I ACTGG 1 cut(s) 827
BseBI CCWGG 2 cut(s) 103, 174
BseDI CCNNGG 4 cut(s) 102, 173, 288, 419
BseGI GGATG 3 cut(s) 64, 250, 598
BseLI CCNNNNNNNGG 2 cut(s) 589, 899
BseMII CTCAG 2 cut(s) 693, 945
BseNI ACTGG 1 cut(s) 827
BseRI GAGGAG 1 cut(s) 254
BseXI GCAGC 2 cut(s) 96, 172
BsgI GTGCAG 1 cut(s) 171
BshFI GGCC 1 cut(s) 907
BshNI GGYRCC 1 cut(s) 404
BsiHKAI GWGCWC 1 cut(s) 582
BslI CCNNNNNNNGG 2 cut(s) 589, 899
BsmAI GTCTC 1 cut(s) 973
BsmI GAATGC 2 cut(s) 923, 964
BsnI GGCC 1 cut(s) 907
Bso31I GGTCTC 1 cut(s) 973
Bsp1286I GDGCHC 1 cut(s) 582
Bsp1407I TGTACA 1 cut(s) 882
Bsp143I GATC 3 cut(s) 541, 854, 889
BspACI CCGC 2 cut(s) 408, 717
BspANI GGCC 1 cut(s) 907
BspCNI CTCAG 2 cut(s) 694, 946
BspHI TCATGA 1 cut(s) 199
BspLI GGNNCC 1 cut(s) 406
BspPI GGATC 3 cut(s) 536, 862, 884
BspT107I GGYRCC 1 cut(s) 404
BspTNI GGTCTC 1 cut(s) 973
BsrGI TGTACA 1 cut(s) 882
BsrI ACTGG 1 cut(s) 827
BssECI CCNNGG 4 cut(s) 102, 173, 288, 419
BssMI GATC 3 cut(s) 541, 854, 889
BssT1I CCWWGG 2 cut(s) 288, 419
Bst2UI CCWGG 2 cut(s) 103, 174
BstAUI TGTACA 1 cut(s) 882
BstC8I GCNNGC 2 cut(s) 964, 968
BstDEI CTNAG 5 cut(s) 702, 754, 862, 936, 954
BstENI CCTNNNNNAGG 1 cut(s) 897
BstF5I GGATG 3 cut(s) 64, 250, 598
BstKTI GATC 3 cut(s) 544, 857, 892
BstMAI GTCTC 1 cut(s) 973
BstMBI GATC 3 cut(s) 541, 854, 889
BstMWI GCNNNNNNNGC 2 cut(s) 368, 913
BstNI CCWGG 2 cut(s) 103, 174
BstSCI CCNGG 2 cut(s) 101, 172
BstV1I GCAGC 2 cut(s) 96, 172
BstV2I GAAGAC 2 cut(s) 45, 234
BsuRI GGCC 1 cut(s) 907
BtgZI GCGATG 1 cut(s) 765
BtsCI GGATG 3 cut(s) 64, 250, 598
BtsIMutI CAGTG 1 cut(s) 885
Cac8I GCNNGC 2 cut(s) 964, 968
CciI TCATGA 1 cut(s) 199
Csp6I GTAC 3 cut(s) 208, 405, 883
CviAII CATG 3 cut(s) 200, 260, 877
CviQI GTAC 3 cut(s) 208, 405, 883
DdeI CTNAG 5 cut(s) 702, 754, 862, 936, 954
DpnI GATC 3 cut(s) 543, 856, 891
DpnII GATC 3 cut(s) 541, 854, 889
DraI TTTAAA 1 cut(s) 478
Ecl136II GAGCTC 1 cut(s) 580
Eco130I CCWWGG 2 cut(s) 288, 419
Eco24I GRGCYC 1 cut(s) 582
Eco31I GGTCTC 1 cut(s) 973
Eco53kI GAGCTC 1 cut(s) 580
EcoICRI GAGCTC 1 cut(s) 580
EcoNI CCTNNNNNAGG 1 cut(s) 897
EcoRI GAATTC 2 cut(s) 697, 940
EcoRII CCWGG 2 cut(s) 101, 172
EcoT14I CCWWGG 2 cut(s) 288, 419
EcoT38I GRGCYC 1 cut(s) 582
ErhI CCWWGG 2 cut(s) 288, 419
FaeI CATG 3 cut(s) 203, 263, 880
FalI AAGNNNNNCTT 2 cut(s) 144, 176
FatI CATG 3 cut(s) 199, 259, 876
FauI CCCGC 1 cut(s) 710
FauNDI CATATG 1 cut(s) 550
Fnu4HI GCNGC 2 cut(s) 110, 186
FokI GGATG 3 cut(s) 71, 257, 605
FriOI GRGCYC 1 cut(s) 582
Fsp4HI GCNGC 2 cut(s) 110, 186
FspBI CTAG 3 cut(s) 420, 438, 735
GluI GCNGC 2 cut(s) 110, 186
GsuI CTGGAG 1 cut(s) 810
HaeIII GGCC 1 cut(s) 907
Hin1II CATG 3 cut(s) 203, 263, 880
HincII GTYRAC 1 cut(s) 951
HindII GTYRAC 1 cut(s) 951
HinfI GANTC 2 cut(s) 524, 722
HphI GGTGA 9 cut(s) 47, 148, 308, 408, 533, 656, 698, 704, 789
Hpy166II GTNNAC 3 cut(s) 751, 885, 951
Hpy188I TCNGA 3 cut(s) 532, 682, 703
Hpy188III TCNNGA 1 cut(s) 200
Hpy8I GTNNAC 3 cut(s) 751, 885, 951
HpyAV CCTTC 2 cut(s) 313, 662
HpyCH4V TGCA 5 cut(s) 112, 188, 362, 923, 962
HpyF10VI GCNNNNNNNGC 2 cut(s) 368, 913
HpyF3I CTNAG 5 cut(s) 702, 754, 862, 936, 954
Hsp92II CATG 3 cut(s) 203, 263, 880
KpnI GGTACC 1 cut(s) 408
Kzo9I GATC 3 cut(s) 541, 854, 889
LmnI GCTCC 1 cut(s) 585
LpnPI CCDG 8 cut(s) 88, 115, 159, 186, 279, 595, 840, 885
Lsp1109I GCAGC 2 cut(s) 96, 172
MaeI CTAG 3 cut(s) 420, 438, 735
MaeIII GTNAC 3 cut(s) 391, 414, 569
MalI GATC 3 cut(s) 543, 856, 891
MboI GATC 3 cut(s) 541, 854, 889
MboII GAAGA 9 cut(s) 50, 161, 176, 239, 463, 519, 566, 665, 752
MhlI GDGCHC 1 cut(s) 582
MmeI TCCRAC 1 cut(s) 375
MroXI GAANNNNTTC 1 cut(s) 42
MseI TTAA 6 cut(s) 72, 315, 447, 477, 636, 985
MspR9I CCNGG 2 cut(s) 103, 174
Mva1269I GAATGC 2 cut(s) 923, 964
MvaI CCWGG 2 cut(s) 103, 174
MwoI GCNNNNNNNGC 2 cut(s) 368, 913
NdeI CATATG 1 cut(s) 550
NdeII GATC 3 cut(s) 541, 854, 889
NlaIII CATG 3 cut(s) 203, 263, 880
NlaIV GGNNCC 1 cut(s) 406
NmuCI GTSAC 2 cut(s) 414, 569
PagI TCATGA 1 cut(s) 199
PctI GAATGC 2 cut(s) 923, 964
PdmI GAANNNNTTC 1 cut(s) 42
PfeI GAWTC 2 cut(s) 524, 722
PkrI GCNGC 2 cut(s) 111, 187
Psp124BI GAGCTC 1 cut(s) 582
Psp6I CCWGG 2 cut(s) 101, 172
PspGI CCWGG 2 cut(s) 101, 172
PspN4I GGNNCC 1 cut(s) 406
RsaI GTAC 3 cut(s) 209, 406, 884
RsaNI GTAC 3 cut(s) 208, 405, 883
SacI GAGCTC 1 cut(s) 582
SaqAI TTAA 6 cut(s) 72, 315, 447, 477, 636, 985
SatI GCNGC 2 cut(s) 110, 186
Sau3AI GATC 3 cut(s) 541, 854, 889
ScrFI CCNGG 2 cut(s) 103, 174
SduI GDGCHC 1 cut(s) 582
SsiI CCGC 2 cut(s) 408, 717
SspMI CTAG 3 cut(s) 420, 438, 735
SstI GAGCTC 1 cut(s) 582
StyD4I CCNGG 2 cut(s) 101, 172
StyI CCWWGG 2 cut(s) 288, 419
TatI WGTACW 2 cut(s) 207, 882
TfiI GAWTC 2 cut(s) 524, 722
Tru1I TTAA 6 cut(s) 72, 315, 447, 477, 636, 985
Tru9I TTAA 6 cut(s) 72, 315, 447, 477, 636, 985
TscAI CASTG 1 cut(s) 892
TseFI GTSAC 2 cut(s) 414, 569
TseI GCWGC 2 cut(s) 109, 185
Tsp45I GTSAC 2 cut(s) 414, 569
TspDTI ATGAA 8 cut(s) 75, 183, 389, 567, 612, 681, 759, 768
TspRI CASTG 1 cut(s) 892
XagI CCTNNNNNAGG 1 cut(s) 897
XapI RAATTY 4 cut(s) 697, 805, 819, 940
XmaJI CCTAGG 1 cut(s) 419
XmnI GAANNNNTTC 1 cut(s) 42
XspI CTAG 3 cut(s) 420, 438, 735
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.