RchiOBHm_Chr6g0276481

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000691
Physical Location & Seq
Reverse (-)
38543775 .. 38545252
1478 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24803

Sequence Viewer

Length: 681 bp
ATGGAAGCTTATGAACCGGCTATCAACCCAATTCCAAGAGTTGCTGAATGGGAAGTGATTAACAAGCCCATCATGCCTCCGAGATATACTAGGGGACCTGGCAGACCAAAAATGTCAAGAAATAAAGAACCAGGTGAGATGCCACCAGCTGCTGGAACAACTAAATTACCCAAGATATATTACAGTAAGATTAGTTGTGGAAAATGTCACAAGCAAGGGCATAACACGAGGACTTGTGATAGGCGCAATCAACAAGGAAGTACCTCTCAAGCTAGTTCTACTATGCAACAAGGCGATGCAAATGAAAAAGGTTCTCAAAATGTTCAGCAAGATGGCGATGCAAATGATGAACATAGAATGCAGAATGCTCAGCAATGTGGCAATTCTAATGGACATAGTTCTCAAAATGTTCATGATGAGGAGCATCATGAGATTCCATCTCAACAATCACTTGCGAAAGCACCTTTTATTTCATCGCAACCACTTCCATCACCTCTAAATTTCTCACAAGAAATTCCTCCAGTTCAAAGAAGTTCTCAACCTATTGGATCATTCTTAGCTTCCTTCTCTATGATGTACACTGATCCTGTAACAAGGAGGCCAAAGAAGCAAGTTGCATTCAGAAATCCTAAGAATTCTATGTCAACTGAGAATGCAAGCAAGCCTATTTGGAGACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

226

Amino Acids

25.21

Weight (kDa)

9.43

Isoelectric Point (pI)

68.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 152
AclWI GGATC 2 cut(s) 556, 578
AcsI RAATTY 3 cut(s) 499, 513, 634
AfaI GTAC 2 cut(s) 262, 578
AfiI CCNNNNNNNGG 1 cut(s) 152
AgsI TTSAA 1 cut(s) 527
AjnI CCWGG 2 cut(s) 97, 130
AluBI AGCT 4 cut(s) 8, 149, 272, 560
AluI AGCT 4 cut(s) 8, 149, 272, 560
Alw26I GTCTC 1 cut(s) 667
AlwI GGATC 2 cut(s) 556, 578
AlwNI CAGNNNCTG 1 cut(s) 152
AoxI GGCC 1 cut(s) 599
ApeKI GCWGC 1 cut(s) 149
ApoI RAATTY 3 cut(s) 499, 513, 634
AspLEI GCGC 1 cut(s) 246
AspS9I GGNCC 1 cut(s) 95
AsuHPI GGTGA 2 cut(s) 146, 483
AvaII GGWCC 1 cut(s) 95
BauI CACGAG 1 cut(s) 226
BbvI GCAGC 1 cut(s) 136
BccI CCATC 4 cut(s) 77, 326, 445, 496
BciT130I CCWGG 2 cut(s) 99, 132
BcoDI GTCTC 1 cut(s) 667
BfaI CTAG 2 cut(s) 90, 273
BisI GCNGC 1 cut(s) 150
BlpI GCTNAGC 1 cut(s) 369
BlsI GCNGC 1 cut(s) 151
Bme1390I CCNGG 2 cut(s) 99, 132
Bme18I GGWCC 1 cut(s) 95
BmgT120I GGNCC 1 cut(s) 95
BmiI GGNNCC 1 cut(s) 96
BmrFI CCNGG 2 cut(s) 99, 132
BmsI GCATC 4 cut(s) 129, 286, 328, 433
BpmI CTGGAG 1 cut(s) 504
Bpu1102I GCTNAGC 1 cut(s) 369
BpuEI CTTGAG 1 cut(s) 252
BsaI GGTCTC 1 cut(s) 667
Bsc4I CCNNNNNNNGG 1 cut(s) 152
Bse118I RCCGGY 1 cut(s) 16
Bse1I ACTGG 1 cut(s) 521
Bse3DI GCAATG 1 cut(s) 380
BseBI CCWGG 2 cut(s) 99, 132
BseLI CCNNNNNNNGG 1 cut(s) 152
BseMI GCAATG 1 cut(s) 380
BseMII CTCAG 2 cut(s) 383, 639
BseNI ACTGG 1 cut(s) 521
BseRI GAGGAG 1 cut(s) 434
BseXI GCAGC 1 cut(s) 136
BshFI GGCC 1 cut(s) 601
BsiSI CCGG 1 cut(s) 17
BslFI GGGAC 1 cut(s) 108
BslI CCNNNNNNNGG 1 cut(s) 152
BsmAI GTCTC 1 cut(s) 667
BsmFI GGGAC 1 cut(s) 108
BsmI GAATGC 4 cut(s) 363, 370, 617, 658
BsnI GGCC 1 cut(s) 601
Bso31I GGTCTC 1 cut(s) 667
Bsp1407I TGTACA 1 cut(s) 576
Bsp143I GATC 2 cut(s) 548, 583
Bsp1720I GCTNAGC 1 cut(s) 369
BspANI GGCC 1 cut(s) 601
BspCNI CTCAG 2 cut(s) 382, 640
BspHI TCATGA 2 cut(s) 412, 427
BspLI GGNNCC 1 cut(s) 96
BspPI GGATC 2 cut(s) 556, 578
BspTNI GGTCTC 1 cut(s) 667
BsrDI GCAATG 1 cut(s) 380
BsrFI RCCGGY 1 cut(s) 16
BsrGI TGTACA 1 cut(s) 576
BsrI ACTGG 1 cut(s) 521
BssAI RCCGGY 1 cut(s) 16
BssMI GATC 2 cut(s) 548, 583
BssSI CACGAG 1 cut(s) 226
Bst2BI CACGAG 1 cut(s) 226
Bst2UI CCWGG 2 cut(s) 99, 132
Bst4CI ACNGT 1 cut(s) 185
BstAUI TGTACA 1 cut(s) 576
BstC8I GCNNGC 2 cut(s) 658, 662
BstDEI CTNAG 4 cut(s) 369, 556, 630, 648
BstHHI GCGC 1 cut(s) 246
BstKTI GATC 2 cut(s) 551, 586
BstMAI GTCTC 1 cut(s) 667
BstMBI GATC 2 cut(s) 548, 583
BstMWI GCNNNNNNNGC 2 cut(s) 73, 607
BstNI CCWGG 2 cut(s) 99, 132
BstSCI CCNGG 2 cut(s) 97, 130
BstV1I GCAGC 1 cut(s) 136
BsuRI GGCC 1 cut(s) 601
BtgZI GCGATG 3 cut(s) 309, 351, 459
BtsIMutI CAGTG 1 cut(s) 579
Cac8I GCNNGC 2 cut(s) 658, 662
CaiI CAGNNNCTG 1 cut(s) 152
CciI TCATGA 2 cut(s) 412, 427
CfoI GCGC 1 cut(s) 246
Cfr10I RCCGGY 1 cut(s) 16
Cfr13I GGNCC 1 cut(s) 95
CsiI ACCWGGT 1 cut(s) 130
Csp6I GTAC 2 cut(s) 261, 577
CviAII CATG 3 cut(s) 73, 413, 428
CviJI RGCY 8 cut(s) 8, 20, 67, 149, 272, 560, 601, 664
CviKI_1 RGCY 8 cut(s) 8, 20, 67, 149, 272, 560, 601, 664
CviQI GTAC 2 cut(s) 261, 577
DdeI CTNAG 4 cut(s) 369, 556, 630, 648
DpnI GATC 2 cut(s) 550, 585
DpnII GATC 2 cut(s) 548, 583
Eco31I GGTCTC 1 cut(s) 667
Eco47I GGWCC 1 cut(s) 95
EcoO109I RGGNCCY 1 cut(s) 95
EcoRI GAATTC 1 cut(s) 634
EcoRII CCWGG 2 cut(s) 97, 130
FaeI CATG 3 cut(s) 76, 416, 431
FaqI GGGAC 1 cut(s) 108
FatI CATG 3 cut(s) 72, 412, 427
Fnu4HI GCNGC 1 cut(s) 150
Fsp4HI GCNGC 1 cut(s) 150
FspBI CTAG 2 cut(s) 90, 273
GlaI GCGC 1 cut(s) 245
GluI GCNGC 1 cut(s) 150
GsuI CTGGAG 1 cut(s) 504
HaeIII GGCC 1 cut(s) 601
HapII CCGG 1 cut(s) 17
HhaI GCGC 1 cut(s) 246
Hin1II CATG 3 cut(s) 76, 416, 431
Hin6I GCGC 1 cut(s) 244
HinP1I GCGC 1 cut(s) 244
HincII GTYRAC 1 cut(s) 645
HindII GTYRAC 1 cut(s) 645
HindIII AAGCTT 1 cut(s) 6
HinfI GANTC 1 cut(s) 433
HpaII CCGG 1 cut(s) 17
HphI GGTGA 2 cut(s) 146, 483
Hpy166II GTNNAC 2 cut(s) 579, 645
Hpy188I TCNGA 2 cut(s) 81, 623
Hpy188III TCNNGA 3 cut(s) 117, 413, 428
Hpy8I GTNNAC 2 cut(s) 579, 645
HpyAV CCTTC 1 cut(s) 574
HpyCH4III ACNGT 1 cut(s) 185
HpyCH4V TGCA 6 cut(s) 286, 299, 341, 361, 617, 656
HpyF10VI GCNNNNNNNGC 2 cut(s) 73, 607
HpyF3I CTNAG 4 cut(s) 369, 556, 630, 648
Hsp92II CATG 3 cut(s) 76, 416, 431
HspAI GCGC 1 cut(s) 244
Kzo9I GATC 2 cut(s) 548, 583
LmnI GCTCC 1 cut(s) 421
LpnPI CCDG 9 cut(s) 30, 84, 111, 117, 138, 144, 159, 534, 600
Lsp1109I GCAGC 1 cut(s) 136
LweI GCATC 4 cut(s) 129, 286, 328, 433
MabI ACCWGGT 1 cut(s) 130
MaeI CTAG 2 cut(s) 90, 273
MaeIII GTNAC 2 cut(s) 206, 589
MalI GATC 2 cut(s) 550, 585
MboI GATC 2 cut(s) 548, 583
MluCI AATT 6 cut(s) 30, 164, 382, 499, 513, 634
MnlI CCTC 7 cut(s) 87, 222, 274, 412, 504, 528, 591
MseI TTAA 2 cut(s) 60, 679
MspA1I CMGCKG 1 cut(s) 149
MspI CCGG 1 cut(s) 17
MspR9I CCNGG 2 cut(s) 99, 132
Mva1269I GAATGC 4 cut(s) 363, 370, 617, 658
MvaI CCWGG 2 cut(s) 99, 132
MwoI GCNNNNNNNGC 2 cut(s) 73, 607
NdeII GATC 2 cut(s) 548, 583
NlaIII CATG 3 cut(s) 76, 416, 431
NlaIV GGNNCC 1 cut(s) 96
NmuCI GTSAC 1 cut(s) 206
PagI TCATGA 2 cut(s) 412, 427
PctI GAATGC 4 cut(s) 363, 370, 617, 658
PfeI GAWTC 1 cut(s) 433
PflMI CCANNNNNTGG 1 cut(s) 152
PkrI GCNGC 1 cut(s) 151
PpuMI RGGWCCY 1 cut(s) 95
Psp5II RGGWCCY 1 cut(s) 95
Psp6I CCWGG 2 cut(s) 97, 130
PspGI CCWGG 2 cut(s) 97, 130
PspN4I GGNNCC 1 cut(s) 96
PspPI GGNCC 1 cut(s) 95
PspPPI RGGWCCY 1 cut(s) 95
PstNI CAGNNNCTG 1 cut(s) 152
PvuII CAGCTG 1 cut(s) 149
RsaI GTAC 2 cut(s) 262, 578
RsaNI GTAC 2 cut(s) 261, 577
SaqAI TTAA 2 cut(s) 60, 679
SatI GCNGC 1 cut(s) 150
Sau3AI GATC 2 cut(s) 548, 583
Sau96I GGNCC 1 cut(s) 95
ScrFI CCNGG 2 cut(s) 99, 132
SexAI ACCWGGT 1 cut(s) 130
SfaNI GCATC 4 cut(s) 129, 286, 328, 433
SinI GGWCC 1 cut(s) 95
SmlI CTYRAG 1 cut(s) 267
SmoI CTYRAG 1 cut(s) 267
Sse9I AATT 6 cut(s) 30, 164, 382, 499, 513, 634
SspMI CTAG 2 cut(s) 90, 273
StyD4I CCNGG 2 cut(s) 97, 130
TaaI ACNGT 1 cut(s) 185
TasI AATT 6 cut(s) 30, 164, 382, 499, 513, 634
TatI WGTACW 1 cut(s) 576
TfiI GAWTC 1 cut(s) 433
Tru1I TTAA 2 cut(s) 60, 679
Tru9I TTAA 2 cut(s) 60, 679
TscAI CASTG 1 cut(s) 586
TseFI GTSAC 1 cut(s) 206
TseI GCWGC 1 cut(s) 149
Tsp45I GTSAC 1 cut(s) 206
TspDTI ATGAA 5 cut(s) 27, 318, 363, 401, 462
TspRI CASTG 1 cut(s) 586
Van91I CCANNNNNTGG 1 cut(s) 152
VpaK11BI GGWCC 1 cut(s) 95
XapI RAATTY 3 cut(s) 499, 513, 634
XspI CTAG 2 cut(s) 90, 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.