Rh7CG418900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000691
Physical Location & Seq
Forward (+)
54114774 .. 54127588
12815 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG418900.1

Sequence Viewer

Length: 615 bp
ATGCATGAGATTGGAGAGAACCTGAGTATTAAAGCGACGAACAGCAATAAGAGCATTTACAATGTTGGTGAGATGCCACCAGCTGCTGGAACAACTAAATTACCCAAGATATATTACAGTAAGATTAGTTGTGGAAAATGTCACAAGCAAGGGCATAACACGAGGACTTGTGATAGGCGCAATCAACAAGGAAGTACCTCTCAAGCTAGTTCTACTATGCAACAAGGCGATGCAAATGAAAAAGGTTCTCAAAATGTTCAGCAAGATGGCAATGCAAATGATGAACATAGAATGCAGAATGCTCAGCAATGTGGCAATTCTAATGGACATAGTTCTCAAAATGTTCATGATGAGGAGCATCATGAGATTCCATCTCAACAATCACTTGCGAAAGCACCTTTTATTTCATCGCAACCACTTCCATCACCTCTAAATTTCTCACAAGAAATTCCTCCAGTTCAAAGAAGTTCTCAACCTATTGGATCATTCTTAGCTTCCTTCTCTATGACGTACACTGATCCTGTAACAAGGAGGCCAAAGAAGCAAGTTGCATTCAGAAATCCTAAGAATTCTATGTCAACTGAGAATGCAAGCAAGCCTATTTGGAGACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

204

Amino Acids

22.52

Weight (kDa)

9.23

Isoelectric Point (pI)

65.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 86
AclWI GGATC 2 cut(s) 490, 512
AcsI RAATTY 3 cut(s) 433, 447, 568
AfaI GTAC 2 cut(s) 196, 512
AfiI CCNNNNNNNGG 1 cut(s) 86
AgsI TTSAA 1 cut(s) 461
AluBI AGCT 3 cut(s) 83, 206, 494
AluI AGCT 3 cut(s) 83, 206, 494
Alw26I GTCTC 1 cut(s) 601
AlwI GGATC 2 cut(s) 490, 512
AlwNI CAGNNNCTG 1 cut(s) 86
AoxI GGCC 1 cut(s) 533
ApeKI GCWGC 1 cut(s) 83
ApoI RAATTY 3 cut(s) 433, 447, 568
AspLEI GCGC 1 cut(s) 180
AsuHPI GGTGA 2 cut(s) 80, 417
BauI CACGAG 1 cut(s) 160
BbvI GCAGC 1 cut(s) 70
BccI CCATC 3 cut(s) 260, 379, 430
BcoDI GTCTC 1 cut(s) 601
BfaI CTAG 1 cut(s) 207
BisI GCNGC 1 cut(s) 84
BlpI GCTNAGC 1 cut(s) 303
BlsI GCNGC 1 cut(s) 85
BmsI GCATC 3 cut(s) 63, 220, 367
BpmI CTGGAG 1 cut(s) 438
Bpu1102I GCTNAGC 1 cut(s) 303
BpuEI CTTGAG 1 cut(s) 186
BsaI GGTCTC 1 cut(s) 601
Bsc4I CCNNNNNNNGG 1 cut(s) 86
Bse1I ACTGG 1 cut(s) 455
Bse3DI GCAATG 2 cut(s) 277, 314
BseLI CCNNNNNNNGG 1 cut(s) 86
BseMI GCAATG 2 cut(s) 277, 314
BseMII CTCAG 3 cut(s) 14, 317, 573
BseNI ACTGG 1 cut(s) 455
BseRI GAGGAG 1 cut(s) 368
BseXI GCAGC 1 cut(s) 70
BshFI GGCC 1 cut(s) 535
BslI CCNNNNNNNGG 1 cut(s) 86
BsmAI GTCTC 1 cut(s) 601
BsmI GAATGC 4 cut(s) 297, 304, 551, 592
BsnI GGCC 1 cut(s) 535
Bso31I GGTCTC 1 cut(s) 601
Bsp143I GATC 2 cut(s) 482, 517
Bsp1720I GCTNAGC 1 cut(s) 303
BspANI GGCC 1 cut(s) 535
BspCNI CTCAG 3 cut(s) 15, 316, 574
BspHI TCATGA 2 cut(s) 346, 361
BspPI GGATC 2 cut(s) 490, 512
BspTNI GGTCTC 1 cut(s) 601
BsrDI GCAATG 2 cut(s) 277, 314
BsrI ACTGG 1 cut(s) 455
BssMI GATC 2 cut(s) 482, 517
BssSI CACGAG 1 cut(s) 160
Bst2BI CACGAG 1 cut(s) 160
Bst4CI ACNGT 1 cut(s) 119
BstC8I GCNNGC 2 cut(s) 592, 596
BstDEI CTNAG 5 cut(s) 23, 303, 490, 564, 582
BstHHI GCGC 1 cut(s) 180
BstKTI GATC 2 cut(s) 485, 520
BstMAI GTCTC 1 cut(s) 601
BstMBI GATC 2 cut(s) 482, 517
BstMWI GCNNNNNNNGC 2 cut(s) 51, 541
BstV1I GCAGC 1 cut(s) 70
BsuRI GGCC 1 cut(s) 535
BtgZI GCGATG 2 cut(s) 243, 393
BtsIMutI CAGTG 1 cut(s) 513
Cac8I GCNNGC 2 cut(s) 592, 596
CaiI CAGNNNCTG 1 cut(s) 86
CciI TCATGA 2 cut(s) 346, 361
CfoI GCGC 1 cut(s) 180
Csp6I GTAC 2 cut(s) 195, 511
CviAII CATG 3 cut(s) 5, 347, 362
CviJI RGCY 5 cut(s) 83, 206, 494, 535, 598
CviKI_1 RGCY 5 cut(s) 83, 206, 494, 535, 598
CviQI GTAC 2 cut(s) 195, 511
DdeI CTNAG 5 cut(s) 23, 303, 490, 564, 582
DpnI GATC 2 cut(s) 484, 519
DpnII GATC 2 cut(s) 482, 517
Eco31I GGTCTC 1 cut(s) 601
EcoRI GAATTC 1 cut(s) 568
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 3 cut(s) 8, 350, 365
FatI CATG 3 cut(s) 4, 346, 361
Fnu4HI GCNGC 1 cut(s) 84
Fsp4HI GCNGC 1 cut(s) 84
FspBI CTAG 1 cut(s) 207
GlaI GCGC 1 cut(s) 179
GluI GCNGC 1 cut(s) 84
GsuI CTGGAG 1 cut(s) 438
HaeIII GGCC 1 cut(s) 535
HhaI GCGC 1 cut(s) 180
Hin1II CATG 3 cut(s) 8, 350, 365
Hin6I GCGC 1 cut(s) 178
HinP1I GCGC 1 cut(s) 178
HincII GTYRAC 1 cut(s) 579
HindII GTYRAC 1 cut(s) 579
HinfI GANTC 1 cut(s) 367
HphI GGTGA 2 cut(s) 80, 417
Hpy166II GTNNAC 2 cut(s) 513, 579
Hpy188I TCNGA 1 cut(s) 557
Hpy188III TCNNGA 2 cut(s) 347, 362
Hpy8I GTNNAC 2 cut(s) 513, 579
Hpy99I CGWCG 1 cut(s) 40
HpyAV CCTTC 1 cut(s) 508
HpyCH4III ACNGT 1 cut(s) 119
HpyCH4IV ACGT 1 cut(s) 509
HpyCH4V TGCA 7 cut(s) 4, 220, 233, 275, 295, 551, 590
HpyF10VI GCNNNNNNNGC 2 cut(s) 51, 541
HpyF3I CTNAG 5 cut(s) 23, 303, 490, 564, 582
HpySE526I ACGT 1 cut(s) 509
Hsp92II CATG 3 cut(s) 8, 350, 365
HspAI GCGC 1 cut(s) 178
Kzo9I GATC 2 cut(s) 482, 517
LmnI GCTCC 1 cut(s) 355
LpnPI CCDG 5 cut(s) 35, 72, 93, 468, 534
Lsp1109I GCAGC 1 cut(s) 70
LweI GCATC 3 cut(s) 63, 220, 367
MaeI CTAG 1 cut(s) 207
MaeII ACGT 1 cut(s) 509
MaeIII GTNAC 2 cut(s) 140, 523
MalI GATC 2 cut(s) 484, 519
MboI GATC 2 cut(s) 482, 517
MluCI AATT 5 cut(s) 98, 316, 433, 447, 568
MnlI CCTC 6 cut(s) 156, 208, 346, 438, 462, 525
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 2 cut(s) 30, 613
MspA1I CMGCKG 1 cut(s) 83
Mva1269I GAATGC 4 cut(s) 297, 304, 551, 592
MwoI GCNNNNNNNGC 2 cut(s) 51, 541
NdeII GATC 2 cut(s) 482, 517
NlaIII CATG 3 cut(s) 8, 350, 365
NmuCI GTSAC 1 cut(s) 140
NsiI ATGCAT 1 cut(s) 6
PagI TCATGA 2 cut(s) 346, 361
PctI GAATGC 4 cut(s) 297, 304, 551, 592
PfeI GAWTC 1 cut(s) 367
PflMI CCANNNNNTGG 1 cut(s) 86
PkrI GCNGC 1 cut(s) 85
PstNI CAGNNNCTG 1 cut(s) 86
PvuII CAGCTG 1 cut(s) 83
RsaI GTAC 2 cut(s) 196, 512
RsaNI GTAC 2 cut(s) 195, 511
SaqAI TTAA 2 cut(s) 30, 613
SatI GCNGC 1 cut(s) 84
Sau3AI GATC 2 cut(s) 482, 517
SfaNI GCATC 3 cut(s) 63, 220, 367
SmlI CTYRAG 1 cut(s) 201
SmoI CTYRAG 1 cut(s) 201
Sse9I AATT 5 cut(s) 98, 316, 433, 447, 568
SspMI CTAG 1 cut(s) 207
TaaI ACNGT 1 cut(s) 119
TaiI ACGT 1 cut(s) 512
TasI AATT 5 cut(s) 98, 316, 433, 447, 568
TfiI GAWTC 1 cut(s) 367
Tru1I TTAA 2 cut(s) 30, 613
Tru9I TTAA 2 cut(s) 30, 613
TscAI CASTG 1 cut(s) 520
TseFI GTSAC 1 cut(s) 140
TseI GCWGC 1 cut(s) 83
Tsp45I GTSAC 1 cut(s) 140
TspDTI ATGAA 4 cut(s) 252, 297, 335, 396
TspRI CASTG 1 cut(s) 520
Van91I CCANNNNNTGG 1 cut(s) 86
XapI RAATTY 3 cut(s) 433, 447, 568
XspI CTAG 1 cut(s) 207
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.