Rh1DG244700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000691
Physical Location & Seq
Forward (+)
45958304 .. 45958624
321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG244700.1

Sequence Viewer

Length: 321 bp
ATGCAGCAAGGCGATGCAAATGAAAAAGGTTCTCAAAATGTTCAGCAAGATGGCAATGCAAATGATGAACATAGAATGCAGAATGCTCAGCAATGTGGCATTTCGAATGGACATAGTTCTGAAAATGTTCATGATGAGGTAATCATTCATAAAATGAGAATGTCAAAGCTTAAATGTAAAATCAGGTTTTTGAGCCATTGCTCGGTTTTATTTGATATTTGCTGGGCCTATGTGCCTCTTTTGTTGGGGTCTTGTACCTCTTGTATTTGGTTTGATCCTTTGGATCTTCTTATACAATCAACCTTTGATAAAAAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

12.05

Weight (kDa)

6.49

Isoelectric Point (pI)

43.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 269, 291
AfaI GTAC 1 cut(s) 256
AfiI CCNNNNNNNGG 1 cut(s) 202
AluBI AGCT 1 cut(s) 169
AluI AGCT 1 cut(s) 169
AlwI GGATC 2 cut(s) 269, 291
AoxI GGCC 1 cut(s) 225
ApeKI GCWGC 1 cut(s) 4
Asp700I GAANNNNTTC 1 cut(s) 126
AspS9I GGNCC 1 cut(s) 225
AsuII TTCGAA 1 cut(s) 104
BbvI GCAGC 1 cut(s) 16
BccI CCATC 1 cut(s) 44
BisI GCNGC 1 cut(s) 5
BlpI GCTNAGC 1 cut(s) 87
BlsI GCNGC 1 cut(s) 6
BmgT120I GGNCC 1 cut(s) 225
BmsI GCATC 1 cut(s) 4
Bpu1102I GCTNAGC 1 cut(s) 87
Bpu14I TTCGAA 1 cut(s) 104
Bsc4I CCNNNNNNNGG 1 cut(s) 202
Bse3DI GCAATG 3 cut(s) 61, 98, 196
BseLI CCNNNNNNNGG 1 cut(s) 202
BseMI GCAATG 3 cut(s) 61, 98, 196
BseMII CTCAG 1 cut(s) 101
BseXI GCAGC 1 cut(s) 16
BseYI CCCAGC 1 cut(s) 222
BshFI GGCC 1 cut(s) 227
BslI CCNNNNNNNGG 1 cut(s) 202
BsmI GAATGC 2 cut(s) 81, 88
BsnI GGCC 1 cut(s) 227
Bsp119I TTCGAA 1 cut(s) 104
Bsp143I GATC 2 cut(s) 274, 283
Bsp1720I GCTNAGC 1 cut(s) 87
BspANI GGCC 1 cut(s) 227
BspCNI CTCAG 1 cut(s) 100
BspHI TCATGA 1 cut(s) 130
BspPI GGATC 2 cut(s) 269, 291
BspT104I TTCGAA 1 cut(s) 104
BsrDI GCAATG 3 cut(s) 61, 98, 196
BssMI GATC 2 cut(s) 274, 283
BstBI TTCGAA 1 cut(s) 104
BstDEI CTNAG 1 cut(s) 87
BstKTI GATC 2 cut(s) 277, 286
BstMBI GATC 2 cut(s) 274, 283
BstV1I GCAGC 1 cut(s) 16
BstX2I RGATCY 1 cut(s) 283
BstYI RGATCY 1 cut(s) 283
BsuRI GGCC 1 cut(s) 227
BtgZI GCGATG 1 cut(s) 27
CciI TCATGA 1 cut(s) 130
Cfr13I GGNCC 1 cut(s) 225
Csp6I GTAC 1 cut(s) 255
CviAII CATG 1 cut(s) 131
CviJI RGCY 3 cut(s) 169, 195, 227
CviKI_1 RGCY 3 cut(s) 169, 195, 227
CviQI GTAC 1 cut(s) 255
DdeI CTNAG 1 cut(s) 87
DpnI GATC 2 cut(s) 276, 285
DpnII GATC 2 cut(s) 274, 283
FaeI CATG 1 cut(s) 134
FaiI YATR 6 cut(s) 72, 114, 132, 150, 231, 293
FatI CATG 1 cut(s) 130
Fnu4HI GCNGC 1 cut(s) 5
Fsp4HI GCNGC 1 cut(s) 5
GluI GCNGC 1 cut(s) 5
GsaI CCCAGC 1 cut(s) 226
HaeIII GGCC 1 cut(s) 227
Hin1II CATG 1 cut(s) 134
HindIII AAGCTT 1 cut(s) 167
Hpy188I TCNGA 1 cut(s) 121
Hpy188III TCNNGA 1 cut(s) 131
HpyCH4V TGCA 4 cut(s) 4, 17, 59, 79
HpyF3I CTNAG 1 cut(s) 87
Hsp92II CATG 1 cut(s) 134
Kzo9I GATC 2 cut(s) 274, 283
LpnPI CCDG 2 cut(s) 169, 208
Lsp1109I GCAGC 1 cut(s) 16
LweI GCATC 1 cut(s) 4
MalI GATC 2 cut(s) 276, 285
MboI GATC 2 cut(s) 274, 283
MboII GAAGA 1 cut(s) 278
MflI RGATCY 1 cut(s) 283
MnlI CCTC 3 cut(s) 130, 246, 268
MroXI GAANNNNTTC 1 cut(s) 126
MseI TTAA 1 cut(s) 171
Mva1269I GAATGC 2 cut(s) 81, 88
NdeII GATC 2 cut(s) 274, 283
NlaIII CATG 1 cut(s) 134
NspV TTCGAA 1 cut(s) 104
PagI TCATGA 1 cut(s) 130
PctI GAATGC 2 cut(s) 81, 88
PdmI GAANNNNTTC 1 cut(s) 126
PkrI GCNGC 1 cut(s) 6
PspFI CCCAGC 1 cut(s) 222
PspPI GGNCC 1 cut(s) 225
PsuI RGATCY 1 cut(s) 283
RsaI GTAC 1 cut(s) 256
RsaNI GTAC 1 cut(s) 255
SaqAI TTAA 1 cut(s) 171
SatI GCNGC 1 cut(s) 5
Sau3AI GATC 2 cut(s) 274, 283
Sau96I GGNCC 1 cut(s) 225
SetI ASST 6 cut(s) 31, 141, 171, 188, 260, 305
SfaNI GCATC 1 cut(s) 4
SfuI TTCGAA 1 cut(s) 104
SgeI CNNG 8 cut(s) 20, 59, 143, 196, 214, 235, 264, 273
TaqI TCGA 1 cut(s) 104
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TseI GCWGC 1 cut(s) 4
TspDTI ATGAA 4 cut(s) 36, 81, 119, 137
XmnI GAANNNNTTC 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.