Rh5BG311500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000691
Physical Location & Seq
Reverse (-)
41051118 .. 41053260
2143 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG311500.1

Sequence Viewer

Length: 594 bp
ATGAACGCAGATAAACCAATCCCTGGTGTTGATGAATGGGAGGTTGTTGAGAGGCCCATTTTACCTCCAAGGTACACTAGAGGACCTGGAAGGCCTAAGCTATTAAGAAACAAGGAACCAGGTGAGCAAGCACCACCTCCTGGAACAACCAAGTTGTCAAGAAGTTACCATCAGTCCATTACTTGTTCAGTTTGTAAAAAAGATGGCCATAATAAGAGGACTTGTTCAAGGAGACAGCAACAAGGCAATGATTCCCAAGCTGGGGTTCAACCATCAGAAACTGATGTTCAGAGTGTCCATGTGGAGCAAGCTGAAAATGTTCAAAGTGATGTGCAAGTTGAAAGTGATATGCATTATGGATCAGTGCAGCAAACTGCAAATGTACCAACACCCTCAATTGTTGCAAGCGCTTCATCTCAACCGATGATCTCATCACCACCTCTACCTCAGTCTTCTTTGCAGCCCACTGTTATCGGATCATCTCATACGTCCAGGACATTTGTATGTCCTAAGACAGGGAAGCCATTCAAGACCAAGTCAATAGCACATAAGCCTAAGCCTAAACTTGTGATAGGAACAAGCACTAAAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

197

Amino Acids

21.35

Weight (kDa)

9.56

Isoelectric Point (pI)

66.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 23, 140
AclWI GGATC 2 cut(s) 367, 484
AcoI YGGCCR 1 cut(s) 205
AfaI GTAC 2 cut(s) 74, 384
AfeI AGCGCT 1 cut(s) 409
AfiI CCNNNNNNNGG 5 cut(s) 23, 140, 261, 262, 515
AgsI TTSAA 5 cut(s) 228, 269, 323, 341, 529
AjnI CCWGG 5 cut(s) 22, 85, 118, 139, 491
AjuI GAANNNNNNNTTGG 2 cut(s) 249, 281
AluBI AGCT 3 cut(s) 100, 260, 311
AluI AGCT 3 cut(s) 100, 260, 311
Alw26I GTCTC 1 cut(s) 226
AlwI GGATC 2 cut(s) 367, 484
AlwNI CAGNNNCTG 1 cut(s) 281
Aor51HI AGCGCT 1 cut(s) 409
AoxI GGCC 3 cut(s) 53, 92, 205
ApeKI GCWGC 2 cut(s) 367, 460
Asp700I GAANNNNTTC 2 cut(s) 318, 524
AspLEI GCGC 1 cut(s) 410
AspS9I GGNCC 2 cut(s) 54, 83
AsuHPI GGTGA 2 cut(s) 134, 426
AvaII GGWCC 1 cut(s) 83
BalI TGGCCA 1 cut(s) 207
BbsI GAAGAC 1 cut(s) 444
BbvI GCAGC 2 cut(s) 379, 472
BccI CCATC 3 cut(s) 177, 197, 280
BciT130I CCWGG 5 cut(s) 24, 87, 120, 141, 493
BcoDI GTCTC 1 cut(s) 226
BfaI CTAG 1 cut(s) 78
BfoI RGCGCY 1 cut(s) 411
BisI GCNGC 2 cut(s) 368, 461
BlsI GCNGC 2 cut(s) 369, 462
Bme1390I CCNGG 5 cut(s) 24, 87, 120, 141, 493
Bme18I GGWCC 1 cut(s) 83
BmgT120I GGNCC 2 cut(s) 54, 83
BmiI GGNNCC 1 cut(s) 117
BmrFI CCNGG 5 cut(s) 24, 87, 120, 141, 493
BpiI GAAGAC 1 cut(s) 444
Bpu10I CCTNAGC 2 cut(s) 96, 555
BsaJI CCNNGG 2 cut(s) 22, 68
Bsc4I CCNNNNNNNGG 5 cut(s) 23, 140, 261, 262, 515
Bse3DI GCAATG 1 cut(s) 253
BseBI CCWGG 5 cut(s) 24, 87, 120, 141, 493
BseDI CCNNGG 2 cut(s) 22, 68
BseLI CCNNNNNNNGG 5 cut(s) 23, 140, 261, 262, 515
BseMI GCAATG 1 cut(s) 253
BseMII CTCAG 1 cut(s) 461
BseXI GCAGC 2 cut(s) 379, 472
BseYI CCCAGC 1 cut(s) 260
BsgI GTGCAG 1 cut(s) 386
BshFI GGCC 3 cut(s) 55, 94, 207
BslI CCNNNNNNNGG 5 cut(s) 23, 140, 261, 262, 515
BsmAI GTCTC 1 cut(s) 226
BsnI GGCC 3 cut(s) 55, 94, 207
Bsp143I GATC 3 cut(s) 359, 426, 476
BspANI GGCC 3 cut(s) 55, 94, 207
BspCNI CTCAG 1 cut(s) 460
BspLI GGNNCC 1 cut(s) 117
BspPI GGATC 2 cut(s) 367, 484
BsrDI GCAATG 1 cut(s) 253
BssECI CCNNGG 2 cut(s) 22, 68
BssMI GATC 3 cut(s) 359, 426, 476
BssT1I CCWWGG 1 cut(s) 68
Bst2UI CCWGG 5 cut(s) 24, 87, 120, 141, 493
Bst4CI ACNGT 1 cut(s) 469
BstC8I GCNNGC 3 cut(s) 129, 309, 406
BstDEI CTNAG 4 cut(s) 96, 447, 510, 555
BstENI CCTNNNNNAGG 1 cut(s) 513
BstH2I RGCGCY 1 cut(s) 411
BstHHI GCGC 1 cut(s) 410
BstKTI GATC 3 cut(s) 362, 429, 479
BstMAI GTCTC 1 cut(s) 226
BstMBI GATC 3 cut(s) 359, 426, 476
BstNI CCWGG 5 cut(s) 24, 87, 120, 141, 493
BstSCI CCNGG 5 cut(s) 22, 85, 118, 139, 491
BstV1I GCAGC 2 cut(s) 379, 472
BstV2I GAAGAC 1 cut(s) 444
BsuRI GGCC 3 cut(s) 55, 94, 207
BtsIMutI CAGTG 2 cut(s) 369, 465
Cac8I GCNNGC 3 cut(s) 129, 309, 406
CaiI CAGNNNCTG 1 cut(s) 281
CfoI GCGC 1 cut(s) 410
Cfr13I GGNCC 2 cut(s) 54, 83
CsiI ACCWGGT 1 cut(s) 118
Csp6I GTAC 2 cut(s) 73, 383
CviAII CATG 2 cut(s) 299, 591
CviQI GTAC 2 cut(s) 73, 383
DdeI CTNAG 4 cut(s) 96, 447, 510, 555
DpnI GATC 3 cut(s) 361, 428, 478
DpnII GATC 3 cut(s) 359, 426, 476
EaeI YGGCCR 1 cut(s) 205
Eco130I CCWWGG 1 cut(s) 68
Eco147I AGGCCT 1 cut(s) 94
Eco47I GGWCC 1 cut(s) 83
Eco47III AGCGCT 1 cut(s) 409
EcoNI CCTNNNNNAGG 1 cut(s) 513
EcoO109I RGGNCCY 1 cut(s) 83
EcoRII CCWGG 5 cut(s) 22, 85, 118, 139, 491
EcoT14I CCWWGG 1 cut(s) 68
EcoT22I ATGCAT 1 cut(s) 354
ErhI CCWWGG 1 cut(s) 68
FaeI CATG 2 cut(s) 302, 594
FaiI YATR 8 cut(s) 210, 300, 350, 357, 486, 505, 549, 592
FatI CATG 2 cut(s) 298, 590
Fnu4HI GCNGC 2 cut(s) 368, 461
Fsp4HI GCNGC 2 cut(s) 368, 461
FspBI CTAG 1 cut(s) 78
GlaI GCGC 1 cut(s) 409
GluI GCNGC 2 cut(s) 368, 461
GsaI CCCAGC 1 cut(s) 264
HaeII RGCGCY 1 cut(s) 411
HaeIII GGCC 3 cut(s) 55, 94, 207
HhaI GCGC 1 cut(s) 410
Hin1II CATG 2 cut(s) 302, 594
Hin6I GCGC 1 cut(s) 408
HinP1I GCGC 1 cut(s) 408
HinfI GANTC 1 cut(s) 251
HphI GGTGA 2 cut(s) 134, 426
Hpy166II GTNNAC 1 cut(s) 75
Hpy188I TCNGA 3 cut(s) 277, 291, 476
Hpy188III TCNNGA 2 cut(s) 159, 529
Hpy8I GTNNAC 1 cut(s) 75
HpyAV CCTTC 1 cut(s) 84
HpyCH4III ACNGT 1 cut(s) 469
HpyCH4IV ACGT 1 cut(s) 488
HpyCH4V TGCA 6 cut(s) 334, 352, 367, 377, 404, 460
HpyF3I CTNAG 4 cut(s) 96, 447, 510, 555
HpySE526I ACGT 1 cut(s) 488
Hsp92II CATG 2 cut(s) 302, 594
HspAI GCGC 1 cut(s) 408
Kzo9I GATC 3 cut(s) 359, 426, 476
LmnI GCTCC 1 cut(s) 304
Lsp1109I GCAGC 2 cut(s) 379, 472
MabI ACCWGGT 1 cut(s) 118
MaeI CTAG 1 cut(s) 78
MaeII ACGT 1 cut(s) 488
MaeIII GTNAC 1 cut(s) 164
MalI GATC 3 cut(s) 361, 428, 478
MboI GATC 3 cut(s) 359, 426, 476
MboII GAAGA 1 cut(s) 444
MfeI CAATTG 1 cut(s) 396
MlsI TGGCCA 1 cut(s) 207
MluCI AATT 1 cut(s) 396
MluNI TGGCCA 1 cut(s) 207
MnlI CCTC 9 cut(s) 34, 45, 74, 75, 147, 210, 403, 450, 456
Mox20I TGGCCA 1 cut(s) 207
Mph1103I ATGCAT 1 cut(s) 354
MroXI GAANNNNTTC 2 cut(s) 318, 524
MscI TGGCCA 1 cut(s) 207
MseI TTAA 1 cut(s) 104
MslI CAYNNNNRTG 1 cut(s) 502
Msp20I TGGCCA 1 cut(s) 207
MspR9I CCNGG 5 cut(s) 24, 87, 120, 141, 493
MunI CAATTG 1 cut(s) 396
MvaI CCWGG 5 cut(s) 24, 87, 120, 141, 493
NdeII GATC 3 cut(s) 359, 426, 476
NlaIII CATG 2 cut(s) 302, 594
NlaIV GGNNCC 1 cut(s) 117
NsiI ATGCAT 1 cut(s) 354
PceI AGGCCT 1 cut(s) 94
PdmI GAANNNNTTC 2 cut(s) 318, 524
PfeI GAWTC 1 cut(s) 251
PflFI GACNNNGTC 1 cut(s) 535
PflMI CCANNNNNTGG 2 cut(s) 23, 140
PfoI TCCNGGA 2 cut(s) 139, 491
PkrI GCNGC 2 cut(s) 369, 462
PpuMI RGGWCCY 1 cut(s) 83
Psp5II RGGWCCY 1 cut(s) 83
Psp6I CCWGG 5 cut(s) 22, 85, 118, 139, 491
PspFI CCCAGC 1 cut(s) 260
PspGI CCWGG 5 cut(s) 22, 85, 118, 139, 491
PspN4I GGNNCC 1 cut(s) 117
PspPI GGNCC 2 cut(s) 54, 83
PspPPI RGGWCCY 1 cut(s) 83
PstNI CAGNNNCTG 1 cut(s) 281
PsyI GACNNNGTC 1 cut(s) 535
RsaI GTAC 2 cut(s) 74, 384
RsaNI GTAC 2 cut(s) 73, 383
RseI CAYNNNNRTG 1 cut(s) 502
SaqAI TTAA 1 cut(s) 104
SatI GCNGC 2 cut(s) 368, 461
Sau3AI GATC 3 cut(s) 359, 426, 476
Sau96I GGNCC 2 cut(s) 54, 83
ScrFI CCNGG 5 cut(s) 24, 87, 120, 141, 493
SexAI ACCWGGT 1 cut(s) 118
SinI GGWCC 1 cut(s) 83
SmiMI CAYNNNNRTG 1 cut(s) 502
Sse9I AATT 1 cut(s) 396
SseBI AGGCCT 1 cut(s) 94
SspMI CTAG 1 cut(s) 78
StuI AGGCCT 1 cut(s) 94
StyD4I CCNGG 5 cut(s) 22, 85, 118, 139, 491
StyI CCWWGG 1 cut(s) 68
TaaI ACNGT 1 cut(s) 469
TaiI ACGT 1 cut(s) 491
TasI AATT 1 cut(s) 396
TfiI GAWTC 1 cut(s) 251
Tru1I TTAA 1 cut(s) 104
Tru9I TTAA 1 cut(s) 104
TscAI CASTG 2 cut(s) 369, 472
TseI GCWGC 2 cut(s) 367, 460
TspDTI ATGAA 3 cut(s) 17, 48, 402
TspRI CASTG 2 cut(s) 369, 472
Tth111I GACNNNGTC 1 cut(s) 535
Van91I CCANNNNNTGG 2 cut(s) 23, 140
VpaK11BI GGWCC 1 cut(s) 83
XagI CCTNNNNNAGG 1 cut(s) 513
XmnI GAANNNNTTC 2 cut(s) 318, 524
XspI CTAG 1 cut(s) 78
Zsp2I ATGCAT 1 cut(s) 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.