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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 3 cut(s) | 123, 711, 872 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 633, 1337 |
| AccI | GTMKAC | 1 cut(s) | 313 |
| AciI | CCGC | 1 cut(s) | 521 |
| AclWI | GGATC | 3 cut(s) | 1092, 1741, 1763 |
| AcsI | RAATTY | 4 cut(s) | 1030, 1684, 1698, 1819 |
| AcuI | CTGAAG | 1 cut(s) | 1167 |
| AdeI | CACNNNGTG | 1 cut(s) | 677 |
| AfaI | GTAC | 5 cut(s) | 218, 610, 1184, 1447, 1763 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 272, 633, 821, 1220, 1337 |
| AflIII | ACRYGT | 1 cut(s) | 1070 |
| AgsI | TTSAA | 8 cut(s) | 101, 176, 424, 643, 784, 800, 920, 1712 |
| AjnI | CCWGG | 3 cut(s) | 1219, 1282, 1315 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 416, 448 |
| AluBI | AGCT | 8 cut(s) | 8, 326, 439, 803, 1193, 1334, 1457, 1745 |
| AluI | AGCT | 8 cut(s) | 8, 326, 439, 803, 1193, 1334, 1457, 1745 |
| Alw21I | GWGCWC | 2 cut(s) | 235, 744 |
| Alw26I | GTCTC | 4 cut(s) | 15, 694, 729, 1852 |
| AlwI | GGATC | 3 cut(s) | 1092, 1741, 1763 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1337 |
| AoxI | GGCC | 2 cut(s) | 263, 1784 |
| ApeKI | GCWGC | 3 cut(s) | 8, 1055, 1334 |
| ApoI | RAATTY | 4 cut(s) | 1030, 1684, 1698, 1819 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 622, 654 |
| AspLEI | GCGC | 1 cut(s) | 1431 |
| AspS9I | GGNCC | 2 cut(s) | 908, 1280 |
| AsuHPI | GGTGA | 6 cut(s) | 203, 578, 663, 1006, 1331, 1668 |
| AvaII | GGWCC | 2 cut(s) | 908, 1280 |
| AxyI | CCTNAGG | 1 cut(s) | 966 |
| BanII | GRGCYC | 1 cut(s) | 76 |
| BauI | CACGAG | 1 cut(s) | 1411 |
| BbsI | GAAGAC | 2 cut(s) | 108, 1155 |
| Bbv12I | GWGCWC | 2 cut(s) | 235, 744 |
| BbvI | GCAGC | 2 cut(s) | 1042, 1321 |
| BccI | CCATC | 6 cut(s) | 275, 332, 1262, 1511, 1630, 1681 |
| BceAI | ACGGC | 1 cut(s) | 857 |
| BciT130I | CCWGG | 3 cut(s) | 1221, 1284, 1317 |
| BciVI | GTATCC | 1 cut(s) | 366 |
| BcoDI | GTCTC | 4 cut(s) | 15, 694, 729, 1852 |
| BfaI | CTAG | 6 cut(s) | 119, 278, 675, 804, 1275, 1458 |
| BfmI | CTRYAG | 1 cut(s) | 327 |
| BfuAI | ACCTGC | 3 cut(s) | 123, 711, 872 |
| BfuI | GTATCC | 1 cut(s) | 366 |
| BglII | AGATCT | 1 cut(s) | 595 |
| BisI | GCNGC | 3 cut(s) | 9, 1056, 1335 |
| BlpI | GCTNAGC | 1 cut(s) | 1554 |
| BlsI | GCNGC | 3 cut(s) | 10, 1057, 1336 |
| Bme1390I | CCNGG | 3 cut(s) | 1221, 1284, 1317 |
| Bme18I | GGWCC | 2 cut(s) | 908, 1280 |
| BmgT120I | GGNCC | 2 cut(s) | 908, 1280 |
| BmiI | GGNNCC | 1 cut(s) | 1281 |
| BmrFI | CCNGG | 3 cut(s) | 1221, 1284, 1317 |
| BmsI | GCATC | 4 cut(s) | 484, 1314, 1471, 1618 |
| BpiI | GAAGAC | 2 cut(s) | 108, 1155 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 709, 741 |
| BpmI | CTGGAG | 1 cut(s) | 1689 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1554 |
| BpuEI | CTTGAG | 1 cut(s) | 1437 |
| Bsa29I | ATCGAT | 1 cut(s) | 336 |
| BsaI | GGTCTC | 3 cut(s) | 694, 729, 1852 |
| BsaJI | CCNNGG | 1 cut(s) | 911 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 272, 633, 821, 1220, 1337 |
| Bse118I | RCCGGY | 2 cut(s) | 703, 1201 |
| Bse1I | ACTGG | 1 cut(s) | 1706 |
| Bse21I | CCTNAGG | 1 cut(s) | 966 |
| Bse3DI | GCAATG | 2 cut(s) | 1528, 1565 |
| BseBI | CCWGG | 3 cut(s) | 1221, 1284, 1317 |
| BseCI | ATCGAT | 1 cut(s) | 336 |
| BseDI | CCNNGG | 1 cut(s) | 911 |
| BseGI | GGATG | 3 cut(s) | 219, 263, 511 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 272, 633, 821, 1220, 1337 |
| BseMI | GCAATG | 2 cut(s) | 1528, 1565 |
| BseMII | CTCAG | 3 cut(s) | 957, 1568, 1824 |
| BseNI | ACTGG | 1 cut(s) | 1706 |
| BseRI | GAGGAG | 2 cut(s) | 983, 1619 |
| BseXI | GCAGC | 2 cut(s) | 1042, 1321 |
| BsgI | GTGCAG | 1 cut(s) | 900 |
| BshFI | GGCC | 2 cut(s) | 265, 1786 |
| BshVI | ATCGAT | 1 cut(s) | 336 |
| BsiHKAI | GWGCWC | 2 cut(s) | 235, 744 |
| BsiSI | CCGG | 2 cut(s) | 704, 1202 |
| BslFI | GGGAC | 2 cut(s) | 106, 1293 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 272, 633, 821, 1220, 1337 |
| BsmAI | GTCTC | 4 cut(s) | 15, 694, 729, 1852 |
| BsmFI | GGGAC | 2 cut(s) | 106, 1293 |
| BsmI | GAATGC | 4 cut(s) | 1548, 1555, 1802, 1843 |
| BsnI | GGCC | 2 cut(s) | 265, 1786 |
| Bso31I | GGTCTC | 3 cut(s) | 694, 729, 1852 |
| Bsp1286I | GDGCHC | 3 cut(s) | 76, 235, 744 |
| Bsp1407I | TGTACA | 2 cut(s) | 216, 1761 |
| Bsp143I | GATC | 5 cut(s) | 595, 617, 1084, 1733, 1768 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1554 |
| BspACI | CCGC | 1 cut(s) | 521 |
| BspANI | GGCC | 2 cut(s) | 265, 1786 |
| BspCNI | CTCAG | 3 cut(s) | 958, 1567, 1825 |
| BspDI | ATCGAT | 1 cut(s) | 336 |
| BspHI | TCATGA | 3 cut(s) | 952, 1597, 1612 |
| BspLI | GGNNCC | 1 cut(s) | 1281 |
| BspMI | ACCTGC | 3 cut(s) | 123, 711, 872 |
| BspPI | GGATC | 3 cut(s) | 1092, 1741, 1763 |
| BspTNI | GGTCTC | 3 cut(s) | 694, 729, 1852 |
| BsrDI | GCAATG | 2 cut(s) | 1528, 1565 |
| BsrFI | RCCGGY | 2 cut(s) | 703, 1201 |
| BsrGI | TGTACA | 2 cut(s) | 216, 1761 |
| BsrI | ACTGG | 1 cut(s) | 1706 |
| BssAI | RCCGGY | 2 cut(s) | 703, 1201 |
| BssECI | CCNNGG | 1 cut(s) | 911 |
| BssMI | GATC | 5 cut(s) | 595, 617, 1084, 1733, 1768 |
| BssNAI | GTATAC | 1 cut(s) | 314 |
| BssSI | CACGAG | 1 cut(s) | 1411 |
| Bst1107I | GTATAC | 1 cut(s) | 314 |
| Bst2BI | CACGAG | 1 cut(s) | 1411 |
| Bst2UI | CCWGG | 3 cut(s) | 1221, 1284, 1317 |
| Bst4CI | ACNGT | 4 cut(s) | 97, 301, 927, 1370 |
| BstAUI | TGTACA | 2 cut(s) | 216, 1761 |
| BstC8I | GCNNGC | 4 cut(s) | 6, 1120, 1843, 1847 |
| BstDEI | CTNAG | 5 cut(s) | 966, 1554, 1741, 1815, 1833 |
| BstDSI | CCRYGG | 1 cut(s) | 911 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 819 |
| BstF5I | GGATG | 3 cut(s) | 219, 263, 511 |
| BstHHI | GCGC | 1 cut(s) | 1431 |
| BstKTI | GATC | 5 cut(s) | 598, 620, 1087, 1736, 1771 |
| BstMAI | GTCTC | 4 cut(s) | 15, 694, 729, 1852 |
| BstMBI | GATC | 5 cut(s) | 595, 617, 1084, 1733, 1768 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 1258, 1792 |
| BstNI | CCWGG | 3 cut(s) | 1221, 1284, 1317 |
| BstNSI | RCATGY | 4 cut(s) | 1068, 1074, 1112, 1122 |
| BstSCI | CCNGG | 3 cut(s) | 1219, 1282, 1315 |
| BstSFI | CTRYAG | 1 cut(s) | 327 |
| BstV1I | GCAGC | 2 cut(s) | 1042, 1321 |
| BstV2I | GAAGAC | 2 cut(s) | 108, 1155 |
| BstX2I | RGATCY | 2 cut(s) | 595, 1084 |
| BstYI | RGATCY | 2 cut(s) | 595, 1084 |
| BstZ17I | GTATAC | 1 cut(s) | 314 |
| Bsu15I | ATCGAT | 1 cut(s) | 336 |
| Bsu36I | CCTNAGG | 1 cut(s) | 966 |
| BsuI | GTATCC | 1 cut(s) | 366 |
| BsuRI | GGCC | 2 cut(s) | 265, 1786 |
| BsuTUI | ATCGAT | 1 cut(s) | 336 |
| BtgI | CCRYGG | 1 cut(s) | 911 |
| BtgZI | GCGATG | 3 cut(s) | 44, 1494, 1644 |
| BtsCI | GGATG | 3 cut(s) | 219, 263, 511 |
| BtsIMutI | CAGTG | 2 cut(s) | 582, 1764 |
| BveI | ACCTGC | 3 cut(s) | 123, 711, 872 |
| Cac8I | GCNNGC | 4 cut(s) | 6, 1120, 1843, 1847 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1337 |
| CciI | TCATGA | 3 cut(s) | 952, 1597, 1612 |
| CfoI | GCGC | 1 cut(s) | 1431 |
| Cfr10I | RCCGGY | 2 cut(s) | 703, 1201 |
| Cfr13I | GGNCC | 2 cut(s) | 908, 1280 |
| ClaI | ATCGAT | 1 cut(s) | 336 |
| CsiI | ACCWGGT | 1 cut(s) | 1315 |
| Csp6I | GTAC | 5 cut(s) | 217, 609, 1183, 1446, 1762 |
| CviQI | GTAC | 5 cut(s) | 217, 609, 1183, 1446, 1762 |
| DdeI | CTNAG | 5 cut(s) | 966, 1554, 1741, 1815, 1833 |
| DpnI | GATC | 5 cut(s) | 597, 619, 1086, 1735, 1770 |
| DpnII | GATC | 5 cut(s) | 595, 617, 1084, 1733, 1768 |
| DraI | TTTAAA | 1 cut(s) | 294 |
| DraIII | CACNNNGTG | 1 cut(s) | 677 |
| Eco24I | GRGCYC | 1 cut(s) | 76 |
| Eco31I | GGTCTC | 3 cut(s) | 694, 729, 1852 |
| Eco47I | GGWCC | 2 cut(s) | 908, 1280 |
| Eco57I | CTGAAG | 1 cut(s) | 1167 |
| Eco81I | CCTNAGG | 1 cut(s) | 966 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 819 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1280 |
| EcoRI | GAATTC | 2 cut(s) | 1030, 1819 |
| EcoRII | CCWGG | 3 cut(s) | 1219, 1282, 1315 |
| EcoT22I | ATGCAT | 1 cut(s) | 1124 |
| EcoT38I | GRGCYC | 1 cut(s) | 76 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 300, 332, 416, 448 |
| FaqI | GGGAC | 2 cut(s) | 106, 1293 |
| FauNDI | CATATG | 3 cut(s) | 127, 221, 659 |
| FblI | GTMKAC | 1 cut(s) | 313 |
| Fnu4HI | GCNGC | 3 cut(s) | 9, 1056, 1335 |
| FokI | GGATG | 3 cut(s) | 226, 270, 518 |
| FriOI | GRGCYC | 1 cut(s) | 76 |
| Fsp4HI | GCNGC | 3 cut(s) | 9, 1056, 1335 |
| FspBI | CTAG | 6 cut(s) | 119, 278, 675, 804, 1275, 1458 |
| GlaI | GCGC | 1 cut(s) | 1430 |
| GluI | GCNGC | 3 cut(s) | 9, 1056, 1335 |
| GsuI | CTGGAG | 1 cut(s) | 1689 |
| HaeIII | GGCC | 2 cut(s) | 265, 1786 |
| HapII | CCGG | 2 cut(s) | 704, 1202 |
| HhaI | GCGC | 1 cut(s) | 1431 |
| Hin6I | GCGC | 1 cut(s) | 1429 |
| HinP1I | GCGC | 1 cut(s) | 1429 |
| HincII | GTYRAC | 1 cut(s) | 1830 |
| HindII | GTYRAC | 1 cut(s) | 1830 |
| HindIII | AAGCTT | 1 cut(s) | 1191 |
| HinfI | GANTC | 3 cut(s) | 333, 971, 1618 |
| HpaII | CCGG | 2 cut(s) | 704, 1202 |
| HphI | GGTGA | 6 cut(s) | 203, 578, 663, 1006, 1331, 1668 |
| Hpy166II | GTNNAC | 6 cut(s) | 314, 911, 1048, 1106, 1764, 1830 |
| Hpy188I | TCNGA | 5 cut(s) | 48, 360, 1077, 1266, 1808 |
| Hpy188III | TCNNGA | 8 cut(s) | 278, 421, 953, 965, 1145, 1302, 1598, 1613 |
| Hpy8I | GTNNAC | 6 cut(s) | 314, 911, 1048, 1106, 1764, 1830 |
| HpyAV | CCTTC | 6 cut(s) | 170, 376, 496, 563, 790, 1759 |
| HpyCH4III | ACNGT | 4 cut(s) | 97, 301, 927, 1370 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 1258, 1792 |
| HpyF3I | CTNAG | 5 cut(s) | 966, 1554, 1741, 1815, 1833 |
| HspAI | GCGC | 1 cut(s) | 1429 |
| Kzo9I | GATC | 5 cut(s) | 595, 617, 1084, 1733, 1768 |
| LmnI | GCTCC | 4 cut(s) | 436, 523, 717, 1606 |
| Lsp1109I | GCAGC | 2 cut(s) | 1042, 1321 |
| LweI | GCATC | 4 cut(s) | 484, 1314, 1471, 1618 |
| MabI | ACCWGGT | 1 cut(s) | 1315 |
| MaeI | CTAG | 6 cut(s) | 119, 278, 675, 804, 1275, 1458 |
| MaeIII | GTNAC | 6 cut(s) | 669, 792, 1009, 1136, 1391, 1774 |
| MalI | GATC | 5 cut(s) | 597, 619, 1086, 1735, 1770 |
| MboI | GATC | 5 cut(s) | 595, 617, 1084, 1733, 1768 |
| MboII | GAAGA | 5 cut(s) | 113, 213, 655, 845, 1160 |
| MflI | RGATCY | 2 cut(s) | 595, 1084 |
| MhlI | GDGCHC | 3 cut(s) | 76, 235, 744 |
| MlyI | GAGTC | 1 cut(s) | 980 |
| MmeI | TCCRAC | 2 cut(s) | 227, 1055 |
| Mph1103I | ATGCAT | 1 cut(s) | 1124 |
| MslI | CAYNNNNRTG | 4 cut(s) | 166, 403, 747, 1069 |
| MspA1I | CMGCKG | 2 cut(s) | 326, 1334 |
| MspI | CCGG | 2 cut(s) | 704, 1202 |
| MspR9I | CCNGG | 3 cut(s) | 1221, 1284, 1317 |
| Mva1269I | GAATGC | 4 cut(s) | 1548, 1555, 1802, 1843 |
| MvaI | CCWGG | 3 cut(s) | 1221, 1284, 1317 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 1258, 1792 |
| NdeI | CATATG | 3 cut(s) | 127, 221, 659 |
| NdeII | GATC | 5 cut(s) | 595, 617, 1084, 1733, 1768 |
| NlaIV | GGNNCC | 1 cut(s) | 1281 |
| NmuCI | GTSAC | 2 cut(s) | 669, 1391 |
| NsiI | ATGCAT | 1 cut(s) | 1124 |
| NspI | RCATGY | 4 cut(s) | 1068, 1074, 1112, 1122 |
| PaeI | GCATGC | 1 cut(s) | 1122 |
| PagI | TCATGA | 3 cut(s) | 952, 1597, 1612 |
| PciI | ACATGT | 1 cut(s) | 1070 |
| PctI | GAATGC | 4 cut(s) | 1548, 1555, 1802, 1843 |
| PfeI | GAWTC | 2 cut(s) | 333, 1618 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 633, 1337 |
| PfoI | TCCNGGA | 1 cut(s) | 1219 |
| PkrI | GCNGC | 3 cut(s) | 10, 1057, 1336 |
| PleI | GAGTC | 1 cut(s) | 979 |
| PpsI | GAGTC | 1 cut(s) | 979 |
| PpuMI | RGGWCCY | 1 cut(s) | 1280 |
| PscI | ACATGT | 1 cut(s) | 1070 |
| Psp5II | RGGWCCY | 1 cut(s) | 1280 |
| Psp6I | CCWGG | 3 cut(s) | 1219, 1282, 1315 |
| PspGI | CCWGG | 3 cut(s) | 1219, 1282, 1315 |
| PspN4I | GGNNCC | 1 cut(s) | 1281 |
| PspPI | GGNCC | 2 cut(s) | 908, 1280 |
| PspPPI | RGGWCCY | 1 cut(s) | 1280 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 434, 466 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1337 |
| PsuI | RGATCY | 2 cut(s) | 595, 1084 |
| PvuII | CAGCTG | 2 cut(s) | 326, 1334 |
| RsaI | GTAC | 5 cut(s) | 218, 610, 1184, 1447, 1763 |
| RsaNI | GTAC | 5 cut(s) | 217, 609, 1183, 1446, 1762 |
| RseI | CAYNNNNRTG | 4 cut(s) | 166, 403, 747, 1069 |
| SatI | GCNGC | 3 cut(s) | 9, 1056, 1335 |
| Sau3AI | GATC | 5 cut(s) | 595, 617, 1084, 1733, 1768 |
| Sau96I | GGNCC | 2 cut(s) | 908, 1280 |
| SchI | GAGTC | 1 cut(s) | 980 |
| ScrFI | CCNGG | 3 cut(s) | 1221, 1284, 1317 |
| SduI | GDGCHC | 3 cut(s) | 76, 235, 744 |
| SexAI | ACCWGGT | 1 cut(s) | 1315 |
| SfaNI | GCATC | 4 cut(s) | 484, 1314, 1471, 1618 |
| SfcI | CTRYAG | 1 cut(s) | 327 |
| SinI | GGWCC | 2 cut(s) | 908, 1280 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 166, 403, 747, 1069 |
| SmlI | CTYRAG | 1 cut(s) | 1452 |
| SmoI | CTYRAG | 1 cut(s) | 1452 |
| SphI | GCATGC | 1 cut(s) | 1122 |
| SsiI | CCGC | 1 cut(s) | 521 |
| SspMI | CTAG | 6 cut(s) | 119, 278, 675, 804, 1275, 1458 |
| StyD4I | CCNGG | 3 cut(s) | 1219, 1282, 1315 |
| TaaI | ACNGT | 4 cut(s) | 97, 301, 927, 1370 |
| TaqI | TCGA | 3 cut(s) | 336, 788, 977 |
| TatI | WGTACW | 4 cut(s) | 216, 608, 1182, 1761 |
| TfiI | GAWTC | 2 cut(s) | 333, 1618 |
| TscAI | CASTG | 2 cut(s) | 589, 1771 |
| TseFI | GTSAC | 2 cut(s) | 669, 1391 |
| TseI | GCWGC | 3 cut(s) | 8, 1055, 1334 |
| Tsp45I | GTSAC | 2 cut(s) | 669, 1391 |
| TspDTI | ATGAA | 7 cut(s) | 454, 869, 1212, 1503, 1548, 1586, 1647 |
| TspGWI | ACGGA | 1 cut(s) | 928 |
| TspRI | CASTG | 2 cut(s) | 589, 1771 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 633, 1337 |
| VpaK11BI | GGWCC | 2 cut(s) | 908, 1280 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 819 |
| XapI | RAATTY | 4 cut(s) | 1030, 1684, 1698, 1819 |
| XbaI | TCTAGA | 1 cut(s) | 277 |
| XceI | RCATGY | 4 cut(s) | 1068, 1074, 1112, 1122 |
| XmiI | GTMKAC | 1 cut(s) | 313 |
| XspI | CTAG | 6 cut(s) | 119, 278, 675, 804, 1275, 1458 |
| Zsp2I | ATGCAT | 1 cut(s) | 1124 |