Rh6DG208800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000691
Physical Location & Seq
Reverse (-)
37173346 .. 37178076
4731 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG208800.1

Sequence Viewer

Length: 657 bp
ATGGAAAATCAACCAAAACTTGAAGATGAACCTGGGAATAAAGCTGCACCTATTTGTCATGACAAGTACATTGGGAATGTGATTGAAGACATAGTAGAGGAGGATGGTATGAGTAGTCATGGGGTAAAAGATAAAGGAAAAAGAACTAAGGCTGGTGAGAAAAGAAAGACATTTAAGAAGGGAAAGAGTAGCGGTTTGAACGACAACTCCAACCATTTTGCAAAGGTGGCTATGAACAATGATGTTGAGAGTTCTACTATGCAACAAGGCGATGCAAATGAAAAAGGTTCTCAAAATGTTCAGCAAGATGGCGATGCAAATGATGAACATAGAATGCAGAATGCTCAGCAATGTGGCAATTCTAATGGACATAGTTCTCAAAATGTTCATGATGAGGAGCATCATGAGATTCCATCTCAACAATCACTTGCGAAAGCACCTTTTATTTCATCGCAACCACTTCCATCACCTCTAAATTTCTCACAAGAAATTCCTCCAGTTCAAAGAAGTTCTCAACCTATTGGATCATTCTTAGCTTCCTTCTCTATGATGTACACTGATCCTGTAACAAGGAGGCCAAAGAAGCAAGTTGCATTCAGAAATCCTAAGAATTCTATGTCAACTGAGAATGCAAGCAAGCCTATTTGGAGACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

218

Amino Acids

24.13

Weight (kDa)

6.71

Isoelectric Point (pI)

59.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 192
AclWI GGATC 2 cut(s) 532, 554
AcsI RAATTY 3 cut(s) 475, 489, 610
AfaI GTAC 2 cut(s) 68, 554
AgsI TTSAA 4 cut(s) 23, 86, 199, 503
AjnI CCWGG 1 cut(s) 31
AloI GAACNNNNNNTCC 2 cut(s) 191, 223
AluBI AGCT 2 cut(s) 44, 536
AluI AGCT 2 cut(s) 44, 536
Alw26I GTCTC 1 cut(s) 643
AlwI GGATC 2 cut(s) 532, 554
AoxI GGCC 1 cut(s) 575
ApeKI GCWGC 1 cut(s) 44
ApoI RAATTY 3 cut(s) 475, 489, 610
AsuHPI GGTGA 2 cut(s) 167, 459
BbsI GAAGAC 1 cut(s) 93
BbvI GCAGC 1 cut(s) 31
BccI CCATC 4 cut(s) 98, 302, 421, 472
BciT130I CCWGG 1 cut(s) 33
BcoDI GTCTC 1 cut(s) 643
BisI GCNGC 1 cut(s) 45
BlpI GCTNAGC 1 cut(s) 345
BlsI GCNGC 1 cut(s) 46
Bme1390I CCNGG 1 cut(s) 33
BmrFI CCNGG 1 cut(s) 33
BmsI GCATC 3 cut(s) 262, 304, 409
BpiI GAAGAC 1 cut(s) 93
BpmI CTGGAG 1 cut(s) 480
Bpu1102I GCTNAGC 1 cut(s) 345
BsaI GGTCTC 1 cut(s) 643
BsaJI CCNNGG 1 cut(s) 32
BsaXI ACNNNNNCTCC 2 cut(s) 191, 221
Bse1I ACTGG 1 cut(s) 497
Bse3DI GCAATG 1 cut(s) 356
BseBI CCWGG 1 cut(s) 33
BseDI CCNNGG 1 cut(s) 32
BseGI GGATG 1 cut(s) 109
BseMI GCAATG 1 cut(s) 356
BseMII CTCAG 2 cut(s) 359, 615
BseNI ACTGG 1 cut(s) 497
BseRI GAGGAG 2 cut(s) 113, 410
BseXI GCAGC 1 cut(s) 31
BsgI GTGCAG 1 cut(s) 30
BshFI GGCC 1 cut(s) 577
BsmAI GTCTC 1 cut(s) 643
BsmI GAATGC 4 cut(s) 339, 346, 593, 634
BsnI GGCC 1 cut(s) 577
Bso31I GGTCTC 1 cut(s) 643
Bsp1407I TGTACA 1 cut(s) 552
Bsp143I GATC 2 cut(s) 524, 559
Bsp1720I GCTNAGC 1 cut(s) 345
BspACI CCGC 1 cut(s) 192
BspANI GGCC 1 cut(s) 577
BspCNI CTCAG 2 cut(s) 358, 616
BspHI TCATGA 3 cut(s) 58, 388, 403
BspPI GGATC 2 cut(s) 532, 554
BspTNI GGTCTC 1 cut(s) 643
BsrDI GCAATG 1 cut(s) 356
BsrGI TGTACA 1 cut(s) 552
BsrI ACTGG 1 cut(s) 497
BssECI CCNNGG 1 cut(s) 32
BssMI GATC 2 cut(s) 524, 559
Bst2UI CCWGG 1 cut(s) 33
BstAUI TGTACA 1 cut(s) 552
BstC8I GCNNGC 2 cut(s) 634, 638
BstDEI CTNAG 5 cut(s) 147, 345, 532, 606, 624
BstF5I GGATG 1 cut(s) 109
BstKTI GATC 2 cut(s) 527, 562
BstMAI GTCTC 1 cut(s) 643
BstMBI GATC 2 cut(s) 524, 559
BstMWI GCNNNNNNNGC 2 cut(s) 227, 583
BstNI CCWGG 1 cut(s) 33
BstSCI CCNGG 1 cut(s) 31
BstV1I GCAGC 1 cut(s) 31
BstV2I GAAGAC 1 cut(s) 93
BsuRI GGCC 1 cut(s) 577
BtgZI GCGATG 3 cut(s) 285, 327, 435
BtsCI GGATG 1 cut(s) 109
BtsIMutI CAGTG 1 cut(s) 555
Cac8I GCNNGC 2 cut(s) 634, 638
CciI TCATGA 3 cut(s) 58, 388, 403
Csp6I GTAC 2 cut(s) 67, 553
CviAII CATG 4 cut(s) 59, 119, 389, 404
CviJI RGCY 6 cut(s) 44, 152, 230, 536, 577, 640
CviKI_1 RGCY 6 cut(s) 44, 152, 230, 536, 577, 640
CviQI GTAC 2 cut(s) 67, 553
DdeI CTNAG 5 cut(s) 147, 345, 532, 606, 624
DpnI GATC 2 cut(s) 526, 561
DpnII GATC 2 cut(s) 524, 559
Eco31I GGTCTC 1 cut(s) 643
EcoRI GAATTC 1 cut(s) 610
EcoRII CCWGG 1 cut(s) 31
FaeI CATG 4 cut(s) 62, 122, 392, 407
FatI CATG 4 cut(s) 58, 118, 388, 403
Fnu4HI GCNGC 1 cut(s) 45
FokI GGATG 1 cut(s) 116
Fsp4HI GCNGC 1 cut(s) 45
GluI GCNGC 1 cut(s) 45
GsuI CTGGAG 1 cut(s) 480
HaeIII GGCC 1 cut(s) 577
Hin1II CATG 4 cut(s) 62, 122, 392, 407
HincII GTYRAC 1 cut(s) 621
HindII GTYRAC 1 cut(s) 621
HinfI GANTC 1 cut(s) 409
HphI GGTGA 2 cut(s) 167, 459
Hpy166II GTNNAC 2 cut(s) 555, 621
Hpy188I TCNGA 1 cut(s) 599
Hpy188III TCNNGA 3 cut(s) 59, 389, 404
Hpy8I GTNNAC 2 cut(s) 555, 621
HpyAV CCTTC 2 cut(s) 172, 550
HpyCH4V TGCA 8 cut(s) 47, 221, 262, 275, 317, 337, 593, 632
HpyF10VI GCNNNNNNNGC 2 cut(s) 227, 583
HpyF3I CTNAG 5 cut(s) 147, 345, 532, 606, 624
Hsp92II CATG 4 cut(s) 62, 122, 392, 407
Kzo9I GATC 2 cut(s) 524, 559
LmnI GCTCC 1 cut(s) 397
LpnPI CCDG 5 cut(s) 18, 45, 138, 510, 576
Lsp1109I GCAGC 1 cut(s) 31
LweI GCATC 3 cut(s) 262, 304, 409
MaeIII GTNAC 1 cut(s) 565
MalI GATC 2 cut(s) 526, 561
MboI GATC 2 cut(s) 524, 559
MboII GAAGA 2 cut(s) 35, 98
MluCI AATT 4 cut(s) 358, 475, 489, 610
MmeI TCCRAC 1 cut(s) 234
MnlI CCTC 6 cut(s) 91, 94, 388, 480, 504, 567
MseI TTAA 2 cut(s) 174, 655
MspR9I CCNGG 1 cut(s) 33
Mva1269I GAATGC 4 cut(s) 339, 346, 593, 634
MvaI CCWGG 1 cut(s) 33
MwoI GCNNNNNNNGC 2 cut(s) 227, 583
NdeII GATC 2 cut(s) 524, 559
NlaIII CATG 4 cut(s) 62, 122, 392, 407
PagI TCATGA 3 cut(s) 58, 388, 403
PctI GAATGC 4 cut(s) 339, 346, 593, 634
PfeI GAWTC 1 cut(s) 409
PkrI GCNGC 1 cut(s) 46
Psp6I CCWGG 1 cut(s) 31
PspGI CCWGG 1 cut(s) 31
RsaI GTAC 2 cut(s) 68, 554
RsaNI GTAC 2 cut(s) 67, 553
SaqAI TTAA 2 cut(s) 174, 655
SatI GCNGC 1 cut(s) 45
Sau3AI GATC 2 cut(s) 524, 559
ScrFI CCNGG 1 cut(s) 33
SfaNI GCATC 3 cut(s) 262, 304, 409
Sse9I AATT 4 cut(s) 358, 475, 489, 610
SsiI CCGC 1 cut(s) 192
StyD4I CCNGG 1 cut(s) 31
TasI AATT 4 cut(s) 358, 475, 489, 610
TatI WGTACW 2 cut(s) 66, 552
TfiI GAWTC 1 cut(s) 409
Tru1I TTAA 2 cut(s) 174, 655
Tru9I TTAA 2 cut(s) 174, 655
TscAI CASTG 1 cut(s) 562
TseI GCWGC 1 cut(s) 44
TspDTI ATGAA 6 cut(s) 42, 248, 294, 339, 377, 438
TspRI CASTG 1 cut(s) 562
XapI RAATTY 3 cut(s) 475, 489, 610
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.