Rh5DG009700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000691
Physical Location & Seq
Forward (+)
630286 .. 635438
5153 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG009700.1

Sequence Viewer

Length: 312 bp
ATGAAATCAAGACTGTTTTTTATAAAGAGCTCCTCACAGACCCTTTTAGAGTTGCTATTTATGTTCGCAGTTAGGCTAAAGGCTATGCCGACTTCAGCGTATACAGTCTACGCTCAAGTCATATGCGTGTTGGAAAACATTCTTTGTAAAAATATAGGCCGACGACGTGGAGACATTGCAGACTTGATGGAGATCCAACAACAAGGCATGGTACCGACACCCTCAAATGTTACAAGTGGTTCATCTCAACCAGTGATCTCATCATCACCATTTATGACTCAAGTTAACATTCAGCCTCAGTCTTGTTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.41

Weight (kDa)

9.3

Isoelectric Point (pI)

78.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 23
Acc65I GGTACC 1 cut(s) 211
AccB1I GGYRCC 1 cut(s) 211
AccI GTMKAC 2 cut(s) 101, 108
AclWI GGATC 1 cut(s) 187
AcuI CTGAAG 1 cut(s) 78
AfaI GTAC 1 cut(s) 213
AjiI CACGTC 1 cut(s) 167
AluBI AGCT 1 cut(s) 30
AluI AGCT 1 cut(s) 30
Alw21I GWGCWC 1 cut(s) 32
Alw26I GTCTC 1 cut(s) 165
AlwI GGATC 1 cut(s) 187
AoxI GGCC 1 cut(s) 157
Asp700I GAANNNNTTC 1 cut(s) 138
Asp718I GGTACC 1 cut(s) 211
AsuHPI GGTGA 1 cut(s) 258
BanI GGYRCC 1 cut(s) 211
BanII GRGCYC 1 cut(s) 32
Bbv12I GWGCWC 1 cut(s) 32
BccI CCATC 1 cut(s) 181
BcoDI GTCTC 1 cut(s) 165
BmgBI CACGTC 1 cut(s) 167
BmiI GGNNCC 1 cut(s) 213
BpuEI CTTGAG 2 cut(s) 99, 264
BsaBI GATNNNNATC 1 cut(s) 191
Bse1I ACTGG 1 cut(s) 251
Bse3DI GCAATG 1 cut(s) 174
Bse8I GATNNNNATC 1 cut(s) 191
BseJI GATNNNNATC 1 cut(s) 191
BseMI GCAATG 1 cut(s) 174
BseMII CTCAG 1 cut(s) 311
BseNI ACTGG 1 cut(s) 251
BseRI GAGGAG 1 cut(s) 22
BshFI GGCC 1 cut(s) 159
BshNI GGYRCC 1 cut(s) 211
BsiHKAI GWGCWC 1 cut(s) 32
BsmAI GTCTC 1 cut(s) 165
BsnI GGCC 1 cut(s) 159
Bsp1286I GDGCHC 1 cut(s) 32
Bsp143I GATC 2 cut(s) 192, 255
BspANI GGCC 1 cut(s) 159
BspCNI CTCAG 1 cut(s) 310
BspLI GGNNCC 1 cut(s) 213
BspPI GGATC 1 cut(s) 187
BspT107I GGYRCC 1 cut(s) 211
BsrDI GCAATG 1 cut(s) 174
BsrI ACTGG 1 cut(s) 251
BssMI GATC 2 cut(s) 192, 255
BssNAI GTATAC 1 cut(s) 102
Bst1107I GTATAC 1 cut(s) 102
Bst4CI ACNGT 2 cut(s) 15, 106
BstDEI CTNAG 1 cut(s) 297
BstKTI GATC 2 cut(s) 195, 258
BstMAI GTCTC 1 cut(s) 165
BstMBI GATC 2 cut(s) 192, 255
BstX2I RGATCY 1 cut(s) 192
BstYI RGATCY 1 cut(s) 192
BstZ17I GTATAC 1 cut(s) 102
BsuRI GGCC 1 cut(s) 159
BtrI CACGTC 1 cut(s) 167
BtsIMutI CAGTG 1 cut(s) 258
Csp6I GTAC 1 cut(s) 212
CviAII CATG 1 cut(s) 208
CviJI RGCY 5 cut(s) 30, 76, 83, 159, 295
CviKI_1 RGCY 5 cut(s) 30, 76, 83, 159, 295
CviQI GTAC 1 cut(s) 212
DdeI CTNAG 1 cut(s) 297
DpnI GATC 2 cut(s) 194, 257
DpnII GATC 2 cut(s) 192, 255
Ecl136II GAGCTC 1 cut(s) 30
Eco24I GRGCYC 1 cut(s) 32
Eco53kI GAGCTC 1 cut(s) 30
Eco57I CTGAAG 1 cut(s) 78
EcoICRI GAGCTC 1 cut(s) 30
EcoT38I GRGCYC 1 cut(s) 32
FaeI CATG 1 cut(s) 211
FaiI YATR 9 cut(s) 23, 62, 86, 102, 122, 124, 155, 209, 275
FatI CATG 1 cut(s) 207
FauNDI CATATG 1 cut(s) 122
FblI GTMKAC 2 cut(s) 101, 108
FriOI GRGCYC 1 cut(s) 32
HaeIII GGCC 1 cut(s) 159
Hin1II CATG 1 cut(s) 211
HincII GTYRAC 1 cut(s) 286
HindII GTYRAC 1 cut(s) 286
HinfI GANTC 1 cut(s) 277
HpaI GTTAAC 1 cut(s) 286
HphI GGTGA 1 cut(s) 258
Hpy166II GTNNAC 3 cut(s) 102, 109, 286
Hpy188III TCNNGA 1 cut(s) 9
Hpy8I GTNNAC 3 cut(s) 102, 109, 286
Hpy99I CGWCG 2 cut(s) 165, 168
HpyCH4III ACNGT 2 cut(s) 15, 106
HpyCH4IV ACGT 1 cut(s) 166
HpyCH4V TGCA 1 cut(s) 179
HpyF3I CTNAG 1 cut(s) 297
HpySE526I ACGT 1 cut(s) 166
Hsp92II CATG 1 cut(s) 211
KpnI GGTACC 1 cut(s) 215
KspAI GTTAAC 1 cut(s) 286
Kzo9I GATC 2 cut(s) 192, 255
LmnI GCTCC 1 cut(s) 35
LpnPI CCDG 1 cut(s) 264
MaeII ACGT 1 cut(s) 166
MaeIII GTNAC 1 cut(s) 229
MalI GATC 2 cut(s) 194, 257
MboI GATC 2 cut(s) 192, 255
MflI RGATCY 1 cut(s) 192
MhlI GDGCHC 1 cut(s) 32
MlyI GAGTC 1 cut(s) 271
MmeI TCCRAC 2 cut(s) 111, 220
MnlI CCTC 3 cut(s) 43, 232, 306
MroXI GAANNNNTTC 1 cut(s) 138
MseI TTAA 1 cut(s) 285
MslI CAYNNNNRTG 1 cut(s) 125
NdeI CATATG 1 cut(s) 122
NdeII GATC 2 cut(s) 192, 255
NlaIII CATG 1 cut(s) 211
NlaIV GGNNCC 1 cut(s) 213
PdmI GAANNNNTTC 1 cut(s) 138
PleI GAGTC 1 cut(s) 271
PpsI GAGTC 1 cut(s) 271
PsiI TTATAA 1 cut(s) 23
Psp124BI GAGCTC 1 cut(s) 32
PspN4I GGNNCC 1 cut(s) 213
PsuI RGATCY 1 cut(s) 192
RsaI GTAC 1 cut(s) 213
RsaNI GTAC 1 cut(s) 212
RseI CAYNNNNRTG 1 cut(s) 125
SacI GAGCTC 1 cut(s) 32
SaqAI TTAA 1 cut(s) 285
Sau3AI GATC 2 cut(s) 192, 255
SchI GAGTC 1 cut(s) 271
SduI GDGCHC 1 cut(s) 32
SetI ASST 2 cut(s) 32, 169
SmiMI CAYNNNNRTG 1 cut(s) 125
SmlI CTYRAG 2 cut(s) 114, 279
SmoI CTYRAG 2 cut(s) 114, 279
SstI GAGCTC 1 cut(s) 32
TaaI ACNGT 2 cut(s) 15, 106
TaiI ACGT 1 cut(s) 169
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TscAI CASTG 1 cut(s) 258
TspDTI ATGAA 2 cut(s) 17, 231
TspRI CASTG 1 cut(s) 258
XmiI GTMKAC 2 cut(s) 101, 108
XmnI GAANNNNTTC 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.