Rmu_sc0008577.1_g000011

SAM dependent carboxyl methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008577.1
OG0000691
Physical Location & Seq
Reverse (-)
37723 .. 38605
883 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008577.1_g000011.1.cds

Sequence Viewer

Length: 504 bp
atgttgaggttggcaaacaagagacaaagtgggccaaattggaggtgtagagttggccctagggtggagaaacagttgaagaaacaagcagacttggctgctgattatagaccaagggagtcaagtgacctcagccatgccatagctgcaatatactcaaagggtaggtccccagatgagtatgtcgatgactactttacaaaggagagatacatgaaggcatatgagccaatcatgtacctaataactagagtgcaagagtgggagatgataaacaagcctattgccccacctctctataggagacagcctgggagacctaagatggctagaaacaaagaagcaagtgaagtggaaccaccagctggattaaccaagctgcccagagctccaaatgataatgaccggtctgagcctcaacatgaggaggttgaacatgaggttgtgcagcaggaggttcaaaatgacggggtgccaactaataatgtgcagcaggaggtttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00592 ko01110 map00592 map01110
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

167

Amino Acids

19.4

Weight (kDa)

7.81

Isoelectric Point (pI)

59.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 472
AccB7I CCANNNNNTGG 1 cut(s) 365
AfaI GTAC 1 cut(s) 239
AfiI CCNNNNNNNGG 2 cut(s) 64, 365
AgeI ACCGGT 1 cut(s) 405
AgsI TTSAA 3 cut(s) 79, 434, 461
AjnI CCWGG 1 cut(s) 310
AluBI AGCT 4 cut(s) 146, 365, 379, 389
AluI AGCT 4 cut(s) 146, 365, 379, 389
Alw21I GWGCWC 1 cut(s) 391
Alw26I GTCTC 3 cut(s) 16, 298, 310
AoxI GGCC 2 cut(s) 32, 55
ApeKI GCWGC 5 cut(s) 98, 146, 379, 448, 490
ArsI GACNNNNNNTTYG 2 cut(s) 152, 184
AsiGI ACCGGT 1 cut(s) 405
AspA2I CCTAGG 1 cut(s) 59
AspS9I GGNCC 3 cut(s) 32, 56, 168
AvaII GGWCC 1 cut(s) 168
AvrII CCTAGG 1 cut(s) 59
BanI GGYRCC 1 cut(s) 472
BanII GRGCYC 1 cut(s) 391
Bbv12I GWGCWC 1 cut(s) 391
BbvCI CCTCAGC 1 cut(s) 131
BbvI GCAGC 4 cut(s) 85, 133, 366, 460
BccI CCATC 1 cut(s) 319
BciT130I CCWGG 1 cut(s) 312
BcoDI GTCTC 3 cut(s) 16, 298, 310
BfaI CTAG 3 cut(s) 60, 249, 330
BfmI CTRYAG 1 cut(s) 298
BisI GCNGC 5 cut(s) 99, 147, 380, 449, 491
BlnI CCTAGG 1 cut(s) 59
BlsI GCNGC 5 cut(s) 100, 148, 381, 450, 492
Bme1390I CCNGG 1 cut(s) 312
Bme18I GGWCC 1 cut(s) 168
BmgT120I GGNCC 3 cut(s) 32, 56, 168
BmiI GGNNCC 3 cut(s) 170, 357, 474
BmrFI CCNGG 1 cut(s) 312
Bpu10I CCTNAGC 1 cut(s) 131
BsaI GGTCTC 1 cut(s) 310
BsaJI CCNNGG 3 cut(s) 59, 113, 311
BsaWI WCCGGW 1 cut(s) 405
BsaXI ACNNNNNCTCC 2 cut(s) 59, 89
Bsc4I CCNNNNNNNGG 2 cut(s) 64, 365
Bse118I RCCGGY 1 cut(s) 405
BseBI CCWGG 1 cut(s) 312
BseDI CCNNGG 3 cut(s) 59, 113, 311
BseLI CCNNNNNNNGG 2 cut(s) 64, 365
BseMII CTCAG 2 cut(s) 145, 402
BseRI GAGGAG 1 cut(s) 440
BseXI GCAGC 4 cut(s) 85, 133, 366, 460
BsgI GTGCAG 1 cut(s) 467
BshFI GGCC 2 cut(s) 34, 57
BshNI GGYRCC 1 cut(s) 472
BshTI ACCGGT 1 cut(s) 405
BsiHKAI GWGCWC 1 cut(s) 391
BsiSI CCGG 1 cut(s) 406
BslFI GGGAC 1 cut(s) 154
BslI CCNNNNNNNGG 2 cut(s) 64, 365
BsmAI GTCTC 3 cut(s) 16, 298, 310
BsmFI GGGAC 1 cut(s) 154
BsnI GGCC 2 cut(s) 34, 57
Bso31I GGTCTC 1 cut(s) 310
Bsp1286I GDGCHC 1 cut(s) 391
BspANI GGCC 2 cut(s) 34, 57
BspCNI CTCAG 2 cut(s) 144, 403
BspLI GGNNCC 3 cut(s) 170, 357, 474
BspT107I GGYRCC 1 cut(s) 472
BspTNI GGTCTC 1 cut(s) 310
BsrFI RCCGGY 1 cut(s) 405
BssAI RCCGGY 1 cut(s) 405
BssECI CCNNGG 3 cut(s) 59, 113, 311
BssT1I CCWWGG 2 cut(s) 59, 113
Bst2UI CCWGG 1 cut(s) 312
Bst4CI ACNGT 1 cut(s) 75
BstDEI CTNAG 3 cut(s) 131, 321, 411
BstMAI GTCTC 3 cut(s) 16, 298, 310
BstMWI GCNNNNNNNGC 2 cut(s) 95, 146
BstNI CCWGG 1 cut(s) 312
BstSCI CCNGG 1 cut(s) 310
BstSFI CTRYAG 1 cut(s) 298
BstV1I GCAGC 4 cut(s) 85, 133, 366, 460
BsuRI GGCC 2 cut(s) 34, 57
Cfr10I RCCGGY 1 cut(s) 405
Cfr13I GGNCC 3 cut(s) 32, 56, 168
Csp6I GTAC 1 cut(s) 238
CspAI ACCGGT 1 cut(s) 405
CspCI CAANNNNNGTGG 2 cut(s) 333, 368
CviAII CATG 5 cut(s) 137, 214, 235, 422, 437
CviQI GTAC 1 cut(s) 238
DdeI CTNAG 3 cut(s) 131, 321, 411
Ecl136II GAGCTC 1 cut(s) 389
Eco130I CCWWGG 2 cut(s) 59, 113
Eco24I GRGCYC 1 cut(s) 391
Eco31I GGTCTC 1 cut(s) 310
Eco47I GGWCC 1 cut(s) 168
Eco53kI GAGCTC 1 cut(s) 389
EcoICRI GAGCTC 1 cut(s) 389
EcoO109I RGGNCCY 1 cut(s) 168
EcoRII CCWGG 1 cut(s) 310
EcoT14I CCWWGG 2 cut(s) 59, 113
EcoT38I GRGCYC 1 cut(s) 391
ErhI CCWWGG 2 cut(s) 59, 113
FaeI CATG 5 cut(s) 140, 217, 238, 425, 440
FaqI GGGAC 1 cut(s) 154
FatI CATG 5 cut(s) 136, 213, 234, 421, 436
FauNDI CATATG 1 cut(s) 223
Fnu4HI GCNGC 5 cut(s) 99, 147, 380, 449, 491
FriOI GRGCYC 1 cut(s) 391
Fsp4HI GCNGC 5 cut(s) 99, 147, 380, 449, 491
FspBI CTAG 3 cut(s) 60, 249, 330
GluI GCNGC 5 cut(s) 99, 147, 380, 449, 491
HaeIII GGCC 2 cut(s) 34, 57
HapII CCGG 1 cut(s) 406
Hin1II CATG 5 cut(s) 140, 217, 238, 425, 440
HinfI GANTC 1 cut(s) 119
HpaII CCGG 1 cut(s) 406
Hpy188I TCNGA 1 cut(s) 412
HpyAV CCTTC 1 cut(s) 211
HpyCH4III ACNGT 1 cut(s) 75
HpyCH4V TGCA 4 cut(s) 149, 256, 448, 490
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 146
HpyF3I CTNAG 3 cut(s) 131, 321, 411
Hsp92II CATG 5 cut(s) 140, 217, 238, 425, 440
LmnI GCTCC 1 cut(s) 394
LpnPI CCDG 9 cut(s) 186, 297, 324, 351, 375, 397, 419, 437, 479
Lsp1109I GCAGC 4 cut(s) 85, 133, 366, 460
MaeI CTAG 3 cut(s) 60, 249, 330
MaeIII GTNAC 1 cut(s) 125
MboII GAAGA 1 cut(s) 91
MhlI GDGCHC 1 cut(s) 391
MluCI AATT 1 cut(s) 37
MlyI GAGTC 1 cut(s) 128
MnlI CCTC 9 cut(s) 36, 140, 303, 418, 421, 426, 433, 448, 490
MseI TTAA 2 cut(s) 371, 502
MspA1I CMGCKG 1 cut(s) 365
MspI CCGG 1 cut(s) 406
MspR9I CCNGG 1 cut(s) 312
MvaI CCWGG 1 cut(s) 312
MwoI GCNNNNNNNGC 2 cut(s) 95, 146
NdeI CATATG 1 cut(s) 223
NlaIII CATG 5 cut(s) 140, 217, 238, 425, 440
NlaIV GGNNCC 3 cut(s) 170, 357, 474
NmuCI GTSAC 1 cut(s) 125
PflMI CCANNNNNTGG 1 cut(s) 365
PinAI ACCGGT 1 cut(s) 405
PkrI GCNGC 5 cut(s) 100, 148, 381, 450, 492
PleI GAGTC 1 cut(s) 127
PpsI GAGTC 1 cut(s) 127
PpuMI RGGWCCY 1 cut(s) 168
Psp124BI GAGCTC 1 cut(s) 391
Psp5II RGGWCCY 1 cut(s) 168
Psp6I CCWGG 1 cut(s) 310
PspGI CCWGG 1 cut(s) 310
PspN4I GGNNCC 3 cut(s) 170, 357, 474
PspPI GGNCC 3 cut(s) 32, 56, 168
PspPPI RGGWCCY 1 cut(s) 168
PvuII CAGCTG 1 cut(s) 365
RsaI GTAC 1 cut(s) 239
RsaNI GTAC 1 cut(s) 238
SacI GAGCTC 1 cut(s) 391
SaqAI TTAA 2 cut(s) 371, 502
SatI GCNGC 5 cut(s) 99, 147, 380, 449, 491
Sau96I GGNCC 3 cut(s) 32, 56, 168
SchI GAGTC 1 cut(s) 128
ScrFI CCNGG 1 cut(s) 312
SduI GDGCHC 1 cut(s) 391
SfcI CTRYAG 1 cut(s) 298
SinI GGWCC 1 cut(s) 168
Sse9I AATT 1 cut(s) 37
SspMI CTAG 3 cut(s) 60, 249, 330
SstI GAGCTC 1 cut(s) 391
StyD4I CCNGG 1 cut(s) 310
StyI CCWWGG 2 cut(s) 59, 113
TaaI ACNGT 1 cut(s) 75
TaqI TCGA 1 cut(s) 186
TasI AATT 1 cut(s) 37
Tru1I TTAA 2 cut(s) 371, 502
Tru9I TTAA 2 cut(s) 371, 502
TseFI GTSAC 1 cut(s) 125
TseI GCWGC 5 cut(s) 98, 146, 379, 448, 490
Tsp45I GTSAC 1 cut(s) 125
TspDTI ATGAA 1 cut(s) 230
Van91I CCANNNNNTGG 1 cut(s) 365
VpaK11BI GGWCC 1 cut(s) 168
XmaJI CCTAGG 1 cut(s) 59
XspI CTAG 3 cut(s) 60, 249, 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.