RLG00000014285

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000691
Physical Location & Seq
Forward (+)
50374562 .. 50378068
3507 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014285

Sequence Viewer

Length: 993 bp
ATGAGTAGTCATGGGGTAAAAGATAAAGGAAAAAGAGCTAAGGCTGGTGAGAAAGGAAAGGCATTTAAGAAGGGAAAGAGTAGCGGTTTGAACGACAACTCCAACCATTTTGCAAAGGTGGCTATGAACAATGATGTTGAGGTTACAAGTAGAGGTACTGCAAAGTCACCTAGGTTGAAGCAGAAAGCAAGGAGAATTAAGAAGAAAGAGGTGGAAAGGAAATATGACACAAGGTTTAAAGGAGAGTTCAACTATGATATTGATGAGTTTCAAGCTGATGGTGAATCTTCTGATAGTGATGATCCCACATATGAAGAAATTATAGATAGTGACTATGAGCTCCATGATGAGGATGATGAAGTGTTGTTCAGGGCAAATGTTGATGTTAGTGGTGTTAATGTTGGTGAATGGGATGAAATGGGCTATGAAGGAATTATATCAGATGGTGAGATGCCACCAGCTGCTGGAACAACTAAATTACCCAAGATATATTACAGTAAAATTAGTTGTGGAAAATGTCACAAGCAAGGGCATAACACAAGGACTTGTGATAGGCGCAATCAACAAGGAAGTACCTCTCAAGCTAGTTCTACTATGCAACAAGGCGATGCAAATGAAAAAGGTTCTCAAAATGTTCAGCAAGATGGCAATGCAAATGATGAACATAGAATGCAGAATGCTCAGCAATGTGGCAATTCTAATGGACATAGTTCTGAAAATGTTCATGATGAGGAGCATCATGAGATTCCATCTCAACAATCACTTGCGAAAGCACCTTTTGTTTCATCGCAACCACTTCCATTACCTCTAAATTTCTCACAAGAAATTCCTCCAGTTCAAAGAAGTTCTCAACCTATTGGATCATTCTTAGCTTCCTTCTCTATGATGTACACTGATCCTGTAACAAGGAGGCCAAAGAAGCAAGTTGCATTCAGAAATCCTAAGAATTCTATGTCAACTGAGAATGCAAGCAAGCCTATTTGGAGACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

331

Amino Acids

36.78

Weight (kDa)

6.57

Isoelectric Point (pI)

45.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 464
AciI CCGC 1 cut(s) 84
AclWI GGATC 3 cut(s) 296, 868, 890
AcsI RAATTY 3 cut(s) 811, 825, 946
AfaI GTAC 3 cut(s) 157, 574, 890
AfiI CCNNNNNNNGG 2 cut(s) 349, 464
AgsI TTSAA 5 cut(s) 91, 178, 250, 272, 839
AloI GAACNNNNNNTCC 2 cut(s) 83, 115
AluBI AGCT 6 cut(s) 38, 275, 340, 461, 584, 872
AluI AGCT 6 cut(s) 38, 275, 340, 461, 584, 872
Alw21I GWGCWC 1 cut(s) 342
Alw26I GTCTC 1 cut(s) 979
AlwI GGATC 3 cut(s) 296, 868, 890
AlwNI CAGNNNCTG 1 cut(s) 464
AoxI GGCC 1 cut(s) 911
ApeKI GCWGC 1 cut(s) 461
ApoI RAATTY 3 cut(s) 811, 825, 946
Asp700I GAANNNNTTC 1 cut(s) 720
AspA2I CCTAGG 1 cut(s) 170
AspLEI GCGC 1 cut(s) 558
AsuHPI GGTGA 5 cut(s) 59, 159, 293, 416, 458
AvrII CCTAGG 1 cut(s) 170
BanII GRGCYC 1 cut(s) 342
Bbv12I GWGCWC 1 cut(s) 342
BbvI GCAGC 1 cut(s) 448
BccI CCATC 4 cut(s) 272, 437, 638, 757
BcoDI GTCTC 1 cut(s) 979
BfaI CTAG 2 cut(s) 171, 585
BisI GCNGC 1 cut(s) 462
BlnI CCTAGG 1 cut(s) 170
BlpI GCTNAGC 1 cut(s) 681
BlsI GCNGC 1 cut(s) 463
BmsI GCATC 3 cut(s) 441, 598, 745
BpmI CTGGAG 1 cut(s) 816
Bpu10I CCTNAGC 1 cut(s) 39
Bpu1102I GCTNAGC 1 cut(s) 681
BpuEI CTTGAG 1 cut(s) 564
BsaI GGTCTC 1 cut(s) 979
BsaJI CCNNGG 1 cut(s) 170
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bsc4I CCNNNNNNNGG 2 cut(s) 349, 464
Bse1I ACTGG 1 cut(s) 833
Bse3DI GCAATG 2 cut(s) 655, 692
BseDI CCNNGG 1 cut(s) 170
BseGI GGATG 2 cut(s) 358, 418
BseLI CCNNNNNNNGG 2 cut(s) 349, 464
BseMI GCAATG 2 cut(s) 655, 692
BseMII CTCAG 2 cut(s) 695, 951
BseNI ACTGG 1 cut(s) 833
BseRI GAGGAG 1 cut(s) 746
BseXI GCAGC 1 cut(s) 448
BshFI GGCC 1 cut(s) 913
BsiHKAI GWGCWC 1 cut(s) 342
BslI CCNNNNNNNGG 2 cut(s) 349, 464
BsmAI GTCTC 1 cut(s) 979
BsmI GAATGC 4 cut(s) 675, 682, 929, 970
BsnI GGCC 1 cut(s) 913
Bso31I GGTCTC 1 cut(s) 979
Bsp1286I GDGCHC 1 cut(s) 342
Bsp1407I TGTACA 1 cut(s) 888
Bsp143I GATC 3 cut(s) 301, 860, 895
Bsp1720I GCTNAGC 1 cut(s) 681
BspACI CCGC 1 cut(s) 84
BspANI GGCC 1 cut(s) 913
BspCNI CTCAG 2 cut(s) 694, 952
BspHI TCATGA 2 cut(s) 724, 739
BspPI GGATC 3 cut(s) 296, 868, 890
BspTNI GGTCTC 1 cut(s) 979
BsrDI GCAATG 2 cut(s) 655, 692
BsrGI TGTACA 1 cut(s) 888
BsrI ACTGG 1 cut(s) 833
BssECI CCNNGG 1 cut(s) 170
BssMI GATC 3 cut(s) 301, 860, 895
BssT1I CCWWGG 1 cut(s) 170
Bst4CI ACNGT 1 cut(s) 497
BstAUI TGTACA 1 cut(s) 888
BstC8I GCNNGC 2 cut(s) 970, 974
BstDEI CTNAG 5 cut(s) 39, 681, 868, 942, 960
BstF5I GGATG 2 cut(s) 358, 418
BstHHI GCGC 1 cut(s) 558
BstKTI GATC 3 cut(s) 304, 863, 898
BstMAI GTCTC 1 cut(s) 979
BstMBI GATC 3 cut(s) 301, 860, 895
BstMWI GCNNNNNNNGC 2 cut(s) 119, 919
BstV1I GCAGC 1 cut(s) 448
BsuRI GGCC 1 cut(s) 913
BtgZI GCGATG 2 cut(s) 621, 771
BtsCI GGATG 2 cut(s) 358, 418
BtsIMutI CAGTG 1 cut(s) 891
Cac8I GCNNGC 2 cut(s) 970, 974
CaiI CAGNNNCTG 1 cut(s) 464
CciI TCATGA 2 cut(s) 724, 739
CfoI GCGC 1 cut(s) 558
Csp6I GTAC 3 cut(s) 156, 573, 889
CviAII CATG 4 cut(s) 11, 344, 725, 740
CviQI GTAC 3 cut(s) 156, 573, 889
DdeI CTNAG 5 cut(s) 39, 681, 868, 942, 960
DpnI GATC 3 cut(s) 303, 862, 897
DpnII GATC 3 cut(s) 301, 860, 895
DraI TTTAAA 1 cut(s) 238
Ecl136II GAGCTC 1 cut(s) 340
Eco130I CCWWGG 1 cut(s) 170
Eco24I GRGCYC 1 cut(s) 342
Eco31I GGTCTC 1 cut(s) 979
Eco53kI GAGCTC 1 cut(s) 340
EcoICRI GAGCTC 1 cut(s) 340
EcoRI GAATTC 1 cut(s) 946
EcoT14I CCWWGG 1 cut(s) 170
EcoT38I GRGCYC 1 cut(s) 342
ErhI CCWWGG 1 cut(s) 170
FaeI CATG 4 cut(s) 14, 347, 728, 743
FatI CATG 4 cut(s) 10, 343, 724, 739
FauNDI CATATG 1 cut(s) 310
Fnu4HI GCNGC 1 cut(s) 462
FokI GGATG 2 cut(s) 365, 425
FriOI GRGCYC 1 cut(s) 342
Fsp4HI GCNGC 1 cut(s) 462
FspBI CTAG 2 cut(s) 171, 585
GlaI GCGC 1 cut(s) 557
GluI GCNGC 1 cut(s) 462
GsuI CTGGAG 1 cut(s) 816
HaeIII GGCC 1 cut(s) 913
HhaI GCGC 1 cut(s) 558
Hin1II CATG 4 cut(s) 14, 347, 728, 743
Hin6I GCGC 1 cut(s) 556
HinP1I GCGC 1 cut(s) 556
HincII GTYRAC 1 cut(s) 957
HindII GTYRAC 1 cut(s) 957
HinfI GANTC 2 cut(s) 284, 745
HphI GGTGA 5 cut(s) 59, 159, 293, 416, 458
Hpy166II GTNNAC 2 cut(s) 891, 957
Hpy188I TCNGA 4 cut(s) 292, 442, 715, 935
Hpy188III TCNNGA 2 cut(s) 725, 740
Hpy8I GTNNAC 2 cut(s) 891, 957
HpyAV CCTTC 3 cut(s) 64, 422, 886
HpyCH4III ACNGT 1 cut(s) 497
HpyCH4V TGCA 8 cut(s) 113, 161, 598, 611, 653, 673, 929, 968
HpyF10VI GCNNNNNNNGC 2 cut(s) 119, 919
HpyF3I CTNAG 5 cut(s) 39, 681, 868, 942, 960
Hsp92II CATG 4 cut(s) 14, 347, 728, 743
HspAI GCGC 1 cut(s) 556
Kzo9I GATC 3 cut(s) 301, 860, 895
LmnI GCTCC 2 cut(s) 345, 733
LpnPI CCDG 6 cut(s) 30, 355, 450, 471, 846, 912
Lsp1109I GCAGC 1 cut(s) 448
LweI GCATC 3 cut(s) 441, 598, 745
MaeI CTAG 2 cut(s) 171, 585
MaeIII GTNAC 5 cut(s) 142, 165, 329, 518, 901
MalI GATC 3 cut(s) 303, 862, 897
MboI GATC 3 cut(s) 301, 860, 895
MboII GAAGA 3 cut(s) 214, 279, 326
MhlI GDGCHC 1 cut(s) 342
MluCI AATT 9 cut(s) 195, 318, 432, 476, 501, 694, 811, 825, 946
MmeI TCCRAC 1 cut(s) 126
MnlI CCTC 9 cut(s) 133, 146, 202, 343, 586, 724, 816, 840, 903
MroXI GAANNNNTTC 1 cut(s) 720
MseI TTAA 5 cut(s) 66, 198, 237, 396, 991
MspA1I CMGCKG 1 cut(s) 461
Mva1269I GAATGC 4 cut(s) 675, 682, 929, 970
MwoI GCNNNNNNNGC 2 cut(s) 119, 919
NdeI CATATG 1 cut(s) 310
NdeII GATC 3 cut(s) 301, 860, 895
NlaIII CATG 4 cut(s) 14, 347, 728, 743
NmuCI GTSAC 3 cut(s) 165, 329, 518
PagI TCATGA 2 cut(s) 724, 739
PctI GAATGC 4 cut(s) 675, 682, 929, 970
PdmI GAANNNNTTC 1 cut(s) 720
PfeI GAWTC 2 cut(s) 284, 745
PflMI CCANNNNNTGG 1 cut(s) 464
PkrI GCNGC 1 cut(s) 463
Psp124BI GAGCTC 1 cut(s) 342
PstNI CAGNNNCTG 1 cut(s) 464
PvuII CAGCTG 1 cut(s) 461
RsaI GTAC 3 cut(s) 157, 574, 890
RsaNI GTAC 3 cut(s) 156, 573, 889
SacI GAGCTC 1 cut(s) 342
SaqAI TTAA 5 cut(s) 66, 198, 237, 396, 991
SatI GCNGC 1 cut(s) 462
Sau3AI GATC 3 cut(s) 301, 860, 895
SduI GDGCHC 1 cut(s) 342
SfaNI GCATC 3 cut(s) 441, 598, 745
SmlI CTYRAG 1 cut(s) 579
SmoI CTYRAG 1 cut(s) 579
Sse9I AATT 9 cut(s) 195, 318, 432, 476, 501, 694, 811, 825, 946
SsiI CCGC 1 cut(s) 84
SspMI CTAG 2 cut(s) 171, 585
SstI GAGCTC 1 cut(s) 342
StyI CCWWGG 1 cut(s) 170
TaaI ACNGT 1 cut(s) 497
TasI AATT 9 cut(s) 195, 318, 432, 476, 501, 694, 811, 825, 946
TatI WGTACW 1 cut(s) 888
TfiI GAWTC 2 cut(s) 284, 745
Tru1I TTAA 5 cut(s) 66, 198, 237, 396, 991
Tru9I TTAA 5 cut(s) 66, 198, 237, 396, 991
TscAI CASTG 1 cut(s) 898
TseFI GTSAC 3 cut(s) 165, 329, 518
TseI GCWGC 1 cut(s) 461
Tsp45I GTSAC 3 cut(s) 165, 329, 518
TspDTI ATGAA 9 cut(s) 140, 327, 372, 429, 441, 630, 675, 713, 774
TspRI CASTG 1 cut(s) 898
Van91I CCANNNNNTGG 1 cut(s) 464
XapI RAATTY 3 cut(s) 811, 825, 946
XmaJI CCTAGG 1 cut(s) 170
XmnI GAANNNNTTC 1 cut(s) 720
XspI CTAG 2 cut(s) 171, 585
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.