Rh1CG085600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000691
Physical Location & Seq
Forward (+)
17806796 .. 17813861
7066 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG085600.1

Sequence Viewer

Length: 456 bp
ATGTCAGATGCGCCAAAAATGTGGAGATATTTTAGACTAGATGGGGAGCCACCAATAAGACATGAGTCAAAGAAACAAGAGGACAAAGAAACTGATGATCAGAGTGTCCATGTGGAGCAAGCTGAAAATGTTCAAAGTGATGTGCAAGTTGAAAGTGATATGCATTATGGATCAGTGCAACAAACTGCAAATTTACCAACACCCTCAATTGTTGCAAGTGCTTCATCTCAACCGATGATCTCATCACCACCTCTACCTCAGTCTTCTTTGCAGCCCACTATTATCGGATCATCTCATACGTCCAAGACATTTGTATGTCCTAAGACAGAGATGTCATTCAAGACCAAGTCAATAGCACATAAGCCTAAGCCTAAACTTGTGATAGGAACAAGCACTAAAGCAAGAGCCCAACAAGGACCAAAGGAGGGTTCCAACAAGAAAATTTGGAAGCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

16.7

Weight (kDa)

9.19

Isoelectric Point (pI)

66.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 331
AclWI GGATC 2 cut(s) 178, 295
AcsI RAATTY 2 cut(s) 190, 441
AfiI CCNNNNNNNGG 1 cut(s) 425
AgsI TTSAA 3 cut(s) 134, 152, 340
AjuI GAANNNNNNNTTGG 2 cut(s) 412, 444
AluBI AGCT 1 cut(s) 122
AluI AGCT 1 cut(s) 122
AlwI GGATC 2 cut(s) 178, 295
ApeKI GCWGC 1 cut(s) 271
ApoI RAATTY 2 cut(s) 190, 441
Asp700I GAANNNNTTC 1 cut(s) 129
AspLEI GCGC 1 cut(s) 13
AspS9I GGNCC 1 cut(s) 416
AsuHPI GGTGA 1 cut(s) 237
AvaII GGWCC 1 cut(s) 416
BanII GRGCYC 1 cut(s) 409
BbsI GAAGAC 1 cut(s) 255
BbvI GCAGC 1 cut(s) 283
BccI CCATC 1 cut(s) 35
BceAI ACGGC 1 cut(s) 436
BclI TGATCA 1 cut(s) 97
BfaI CTAG 1 cut(s) 38
BisI GCNGC 1 cut(s) 272
BlsI GCNGC 1 cut(s) 273
Bme18I GGWCC 1 cut(s) 416
BmgT120I GGNCC 1 cut(s) 416
BmiI GGNNCC 2 cut(s) 48, 430
BoxI GACNNNNGTC 1 cut(s) 64
BpiI GAAGAC 1 cut(s) 255
Bpu10I CCTNAGC 1 cut(s) 366
Bsc4I CCNNNNNNNGG 1 cut(s) 425
BseLI CCNNNNNNNGG 1 cut(s) 425
BseMII CTCAG 1 cut(s) 272
BseXI GCAGC 1 cut(s) 283
BslI CCNNNNNNNGG 1 cut(s) 425
Bsp1286I GDGCHC 1 cut(s) 409
Bsp143I GATC 4 cut(s) 97, 170, 237, 287
BspCNI CTCAG 1 cut(s) 271
BspLI GGNNCC 2 cut(s) 48, 430
BspPI GGATC 2 cut(s) 178, 295
BssMI GATC 4 cut(s) 97, 170, 237, 287
BstC8I GCNNGC 1 cut(s) 120
BstDEI CTNAG 3 cut(s) 258, 321, 366
BstHHI GCGC 1 cut(s) 13
BstKTI GATC 4 cut(s) 100, 173, 240, 290
BstMBI GATC 4 cut(s) 97, 170, 237, 287
BstPAI GACNNNNGTC 1 cut(s) 64
BstV1I GCAGC 1 cut(s) 283
BstV2I GAAGAC 1 cut(s) 255
BstXI CCANNNNNNTGG 1 cut(s) 21
BtsIMutI CAGTG 1 cut(s) 180
Cac8I GCNNGC 1 cut(s) 120
CfoI GCGC 1 cut(s) 13
Cfr13I GGNCC 1 cut(s) 416
CviAII CATG 2 cut(s) 62, 110
CviJI RGCY 7 cut(s) 49, 122, 274, 364, 370, 407, 451
CviKI_1 RGCY 7 cut(s) 49, 122, 274, 364, 370, 407, 451
DdeI CTNAG 3 cut(s) 258, 321, 366
DpnI GATC 4 cut(s) 99, 172, 239, 289
DpnII GATC 4 cut(s) 97, 170, 237, 287
DrdI GACNNNNNNGTC 1 cut(s) 331
DseDI GACNNNNNNGTC 1 cut(s) 331
Eco24I GRGCYC 1 cut(s) 409
Eco47I GGWCC 1 cut(s) 416
EcoT22I ATGCAT 1 cut(s) 165
EcoT38I GRGCYC 1 cut(s) 409
FaeI CATG 2 cut(s) 65, 113
FaiI YATR 7 cut(s) 63, 111, 161, 168, 297, 316, 360
FatI CATG 2 cut(s) 61, 109
FbaI TGATCA 1 cut(s) 97
Fnu4HI GCNGC 1 cut(s) 272
FriOI GRGCYC 1 cut(s) 409
Fsp4HI GCNGC 1 cut(s) 272
FspBI CTAG 1 cut(s) 38
GlaI GCGC 1 cut(s) 12
GluI GCNGC 1 cut(s) 272
HhaI GCGC 1 cut(s) 13
Hin1II CATG 2 cut(s) 65, 113
Hin6I GCGC 1 cut(s) 11
HinP1I GCGC 1 cut(s) 11
HinfI GANTC 1 cut(s) 65
HphI GGTGA 1 cut(s) 237
Hpy188I TCNGA 3 cut(s) 7, 102, 287
Hpy188III TCNNGA 1 cut(s) 340
HpyCH4IV ACGT 1 cut(s) 299
HpyCH4V TGCA 6 cut(s) 145, 163, 178, 188, 215, 271
HpyF3I CTNAG 3 cut(s) 258, 321, 366
HpySE526I ACGT 1 cut(s) 299
Hsp92II CATG 2 cut(s) 65, 113
HspAI GCGC 1 cut(s) 11
Ksp22I TGATCA 1 cut(s) 97
Kzo9I GATC 4 cut(s) 97, 170, 237, 287
LmnI GCTCC 2 cut(s) 46, 115
Lsp1109I GCAGC 1 cut(s) 283
MaeI CTAG 1 cut(s) 38
MaeII ACGT 1 cut(s) 299
MalI GATC 4 cut(s) 99, 172, 239, 289
MboI GATC 4 cut(s) 97, 170, 237, 287
MboII GAAGA 1 cut(s) 255
MfeI CAATTG 1 cut(s) 207
MhlI GDGCHC 1 cut(s) 409
MluCI AATT 3 cut(s) 190, 207, 441
MlyI GAGTC 1 cut(s) 74
MmeI TCCRAC 1 cut(s) 456
MnlI CCTC 5 cut(s) 73, 214, 261, 267, 418
Mph1103I ATGCAT 1 cut(s) 165
MroXI GAANNNNTTC 1 cut(s) 129
MslI CAYNNNNRTG 1 cut(s) 313
MunI CAATTG 1 cut(s) 207
NdeII GATC 4 cut(s) 97, 170, 237, 287
NlaIII CATG 2 cut(s) 65, 113
NlaIV GGNNCC 2 cut(s) 48, 430
NsiI ATGCAT 1 cut(s) 165
PdmI GAANNNNTTC 1 cut(s) 129
PflFI GACNNNGTC 1 cut(s) 346
PkrI GCNGC 1 cut(s) 273
PleI GAGTC 1 cut(s) 73
PpsI GAGTC 1 cut(s) 73
PshAI GACNNNNGTC 1 cut(s) 64
PspN4I GGNNCC 2 cut(s) 48, 430
PspPI GGNCC 1 cut(s) 416
PsyI GACNNNGTC 1 cut(s) 346
RseI CAYNNNNRTG 1 cut(s) 313
SatI GCNGC 1 cut(s) 272
Sau3AI GATC 4 cut(s) 97, 170, 237, 287
Sau96I GGNCC 1 cut(s) 416
SchI GAGTC 1 cut(s) 74
SduI GDGCHC 1 cut(s) 409
SetI ASST 4 cut(s) 124, 253, 259, 302
SinI GGWCC 1 cut(s) 416
SmiMI CAYNNNNRTG 1 cut(s) 313
Sse9I AATT 3 cut(s) 190, 207, 441
SspMI CTAG 1 cut(s) 38
TaiI ACGT 1 cut(s) 302
TasI AATT 3 cut(s) 190, 207, 441
TscAI CASTG 1 cut(s) 180
TseI GCWGC 1 cut(s) 271
TspDTI ATGAA 1 cut(s) 213
TspRI CASTG 1 cut(s) 180
Tth111I GACNNNGTC 1 cut(s) 346
VpaK11BI GGWCC 1 cut(s) 416
XapI RAATTY 2 cut(s) 190, 441
XmnI GAANNNNTTC 1 cut(s) 129
XspI CTAG 1 cut(s) 38
Zsp2I ATGCAT 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.