RchiOBHm_Chr3g0477061

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000691
Physical Location & Seq
Forward (+)
22925047 .. 22925875
829 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44240

Sequence Viewer

Length: 327 bp
ATGCATTATGGATCATTGCAGCAAACTGCAAATGTACCAACACCCTCAATTGTTGCAAGTGCTTCATCTCAACCGATGATCTCATCACCACCTCTACCTCAGTCTTCTTTGCAGCCCACTGTTATCGGATCATCTCATACGTTTAGGACGTTTGTATGTCCTAAGACAGGGATGCCATTCAAGACCAAGTCAATAGCACATAAGCCTAAGCCTAAACTTGTGATAGGAACAAGCACTAAAGCAAGAGCCCAACAAGGACCAAAGAGGGTTCCAACAAGAAAATTTGGAAGCCGTGAACTTAATTTCTATTTTGGACTTGTCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

11.69

Weight (kDa)

11.19

Isoelectric Point (pI)

69.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 19, 136
AcsI RAATTY 1 cut(s) 281
AfaI GTAC 1 cut(s) 36
AfiI CCNNNNNNNGG 1 cut(s) 167
AgsI TTSAA 1 cut(s) 181
AlwI GGATC 2 cut(s) 19, 136
ApeKI GCWGC 2 cut(s) 19, 112
ApoI RAATTY 1 cut(s) 281
AspS9I GGNCC 1 cut(s) 257
AsuHPI GGTGA 1 cut(s) 78
AvaII GGWCC 1 cut(s) 257
BanII GRGCYC 1 cut(s) 250
BbsI GAAGAC 1 cut(s) 96
BbvI GCAGC 2 cut(s) 31, 124
BceAI ACGGC 1 cut(s) 276
BisI GCNGC 2 cut(s) 20, 113
BlsI GCNGC 2 cut(s) 21, 114
Bme18I GGWCC 1 cut(s) 257
BmgT120I GGNCC 1 cut(s) 257
BmiI GGNNCC 1 cut(s) 270
BmsI GCATC 1 cut(s) 162
BpiI GAAGAC 1 cut(s) 96
Bpu10I CCTNAGC 1 cut(s) 207
Bsc4I CCNNNNNNNGG 1 cut(s) 167
Bse3DI GCAATG 1 cut(s) 14
BseGI GGATG 1 cut(s) 177
BseLI CCNNNNNNNGG 1 cut(s) 167
BseMI GCAATG 1 cut(s) 14
BseMII CTCAG 1 cut(s) 113
BseXI GCAGC 2 cut(s) 31, 124
BslI CCNNNNNNNGG 1 cut(s) 167
Bsp1286I GDGCHC 1 cut(s) 250
Bsp143I GATC 3 cut(s) 11, 78, 128
BspCNI CTCAG 1 cut(s) 112
BspLI GGNNCC 1 cut(s) 270
BspPI GGATC 2 cut(s) 19, 136
BsrDI GCAATG 1 cut(s) 14
BssMI GATC 3 cut(s) 11, 78, 128
Bst4CI ACNGT 1 cut(s) 121
BstDEI CTNAG 3 cut(s) 99, 162, 207
BstENI CCTNNNNNAGG 1 cut(s) 165
BstF5I GGATG 1 cut(s) 177
BstKTI GATC 3 cut(s) 14, 81, 131
BstMBI GATC 3 cut(s) 11, 78, 128
BstV1I GCAGC 2 cut(s) 31, 124
BstV2I GAAGAC 1 cut(s) 96
BtsCI GGATG 1 cut(s) 177
BtsIMutI CAGTG 1 cut(s) 117
Cfr13I GGNCC 1 cut(s) 257
Csp6I GTAC 1 cut(s) 35
CviJI RGCY 5 cut(s) 115, 205, 211, 248, 291
CviKI_1 RGCY 5 cut(s) 115, 205, 211, 248, 291
CviQI GTAC 1 cut(s) 35
DdeI CTNAG 3 cut(s) 99, 162, 207
DpnI GATC 3 cut(s) 13, 80, 130
DpnII GATC 3 cut(s) 11, 78, 128
Eco24I GRGCYC 1 cut(s) 250
Eco47I GGWCC 1 cut(s) 257
EcoNI CCTNNNNNAGG 1 cut(s) 165
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 250
FaiI YATR 4 cut(s) 9, 138, 157, 201
Fnu4HI GCNGC 2 cut(s) 20, 113
FokI GGATG 1 cut(s) 184
FriOI GRGCYC 1 cut(s) 250
Fsp4HI GCNGC 2 cut(s) 20, 113
GluI GCNGC 2 cut(s) 20, 113
HphI GGTGA 1 cut(s) 78
Hpy166II GTNNAC 1 cut(s) 296
Hpy188I TCNGA 1 cut(s) 128
Hpy188III TCNNGA 1 cut(s) 181
Hpy8I GTNNAC 1 cut(s) 296
HpyCH4III ACNGT 1 cut(s) 121
HpyCH4IV ACGT 2 cut(s) 140, 149
HpyCH4V TGCA 5 cut(s) 4, 19, 29, 56, 112
HpyF3I CTNAG 3 cut(s) 99, 162, 207
HpySE526I ACGT 2 cut(s) 140, 149
Kzo9I GATC 3 cut(s) 11, 78, 128
LpnPI CCDG 1 cut(s) 153
Lsp1109I GCAGC 2 cut(s) 31, 124
LweI GCATC 1 cut(s) 162
MaeII ACGT 2 cut(s) 140, 149
MalI GATC 3 cut(s) 13, 80, 130
MboI GATC 3 cut(s) 11, 78, 128
MboII GAAGA 1 cut(s) 96
MfeI CAATTG 1 cut(s) 48
MhlI GDGCHC 1 cut(s) 250
MluCI AATT 3 cut(s) 48, 281, 301
MmeI TCCRAC 1 cut(s) 296
MnlI CCTC 4 cut(s) 55, 102, 108, 258
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 300
MunI CAATTG 1 cut(s) 48
NdeII GATC 3 cut(s) 11, 78, 128
NlaIV GGNNCC 1 cut(s) 270
NsiI ATGCAT 1 cut(s) 6
PcsI WCGNNNNNNNCGW 1 cut(s) 146
PflFI GACNNNGTC 1 cut(s) 187
PkrI GCNGC 2 cut(s) 21, 114
PspN4I GGNNCC 1 cut(s) 270
PspPI GGNCC 1 cut(s) 257
PsyI GACNNNGTC 1 cut(s) 187
RsaI GTAC 1 cut(s) 36
RsaNI GTAC 1 cut(s) 35
SaqAI TTAA 1 cut(s) 300
SatI GCNGC 2 cut(s) 20, 113
Sau3AI GATC 3 cut(s) 11, 78, 128
Sau96I GGNCC 1 cut(s) 257
SduI GDGCHC 1 cut(s) 250
SetI ASST 4 cut(s) 94, 100, 143, 152
SfaNI GCATC 1 cut(s) 162
SinI GGWCC 1 cut(s) 257
Sse9I AATT 3 cut(s) 48, 281, 301
TaaI ACNGT 1 cut(s) 121
TaiI ACGT 2 cut(s) 143, 152
TasI AATT 3 cut(s) 48, 281, 301
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TscAI CASTG 1 cut(s) 124
TseI GCWGC 2 cut(s) 19, 112
TspDTI ATGAA 1 cut(s) 54
TspRI CASTG 1 cut(s) 124
Tth111I GACNNNGTC 1 cut(s) 187
VpaK11BI GGWCC 1 cut(s) 257
XagI CCTNNNNNAGG 1 cut(s) 165
XapI RAATTY 1 cut(s) 281
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.