Rh6BG431400

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Reverse (-)
65094522 .. 65096530
2009 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG431400.1

Sequence Viewer

Length: 474 bp
ATGCCAAACTTGGTTGCAGAGTCGGGTAGTATAGGAATTGCTGATATTGTTGCAAACAGTCAATTGAGTCCTACTATGCAGCAAGGCGATGCAAATGAAGAAGGTTCTCAAAATGTTCAACAAGATGGCAGTCCAAATGATGAACATAGAATGCAGAATGCTCAGCAATGTGGCAATTCTAATGGACATAGTTCTGAAATTGTTCACGATGAGGAGCATCATGAGATTCCATCTCAACAATCACTTGCGAAAGCACCTTTTGTTTCATTGCAACCACTTCTATCACCTCTAAATTTCTCACAAGAAATTCCTCCAGTTCAAAGAAGTTCTCAACCTGTTGGATCATTCTTAGCTTCCTTCTCCATCATGAACACTGATCCTGTAACAGGGAGGCCAAAGAAGCAAGTTGCATTCAGAAATCCTAAGAATTCTATGTCAACTGAGAATGCAAGCAAGCCTATTTGGAGACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

17.03

Weight (kDa)

5.24

Isoelectric Point (pI)

64.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 349, 371
AcsI RAATTY 3 cut(s) 292, 306, 427
AfiI CCNNNNNNNGG 1 cut(s) 386
AgsI TTSAA 2 cut(s) 119, 320
AluBI AGCT 1 cut(s) 353
AluI AGCT 1 cut(s) 353
Alw26I GTCTC 1 cut(s) 460
AlwI GGATC 2 cut(s) 349, 371
AoxI GGCC 1 cut(s) 392
ApeKI GCWGC 1 cut(s) 79
ApoI RAATTY 3 cut(s) 292, 306, 427
Asp700I GAANNNNTTC 1 cut(s) 201
AsuHPI GGTGA 1 cut(s) 276
BbvI GCAGC 1 cut(s) 91
BccI CCATC 3 cut(s) 119, 238, 371
BcoDI GTCTC 1 cut(s) 460
BisI GCNGC 1 cut(s) 80
BlpI GCTNAGC 1 cut(s) 162
BlsI GCNGC 1 cut(s) 81
BmsI GCATC 2 cut(s) 79, 226
BpmI CTGGAG 1 cut(s) 297
Bpu1102I GCTNAGC 1 cut(s) 162
BsaI GGTCTC 1 cut(s) 460
Bsc4I CCNNNNNNNGG 1 cut(s) 386
Bse1I ACTGG 1 cut(s) 314
Bse3DI GCAATG 2 cut(s) 173, 266
BseLI CCNNNNNNNGG 1 cut(s) 386
BseMI GCAATG 2 cut(s) 173, 266
BseMII CTCAG 2 cut(s) 176, 432
BseNI ACTGG 1 cut(s) 314
BseRI GAGGAG 1 cut(s) 227
BseXI GCAGC 1 cut(s) 91
BshFI GGCC 1 cut(s) 394
BslI CCNNNNNNNGG 1 cut(s) 386
BsmAI GTCTC 1 cut(s) 460
BsmI GAATGC 4 cut(s) 156, 163, 410, 451
BsnI GGCC 1 cut(s) 394
Bso31I GGTCTC 1 cut(s) 460
Bsp143I GATC 2 cut(s) 341, 376
Bsp1720I GCTNAGC 1 cut(s) 162
BspANI GGCC 1 cut(s) 394
BspCNI CTCAG 2 cut(s) 175, 433
BspHI TCATGA 2 cut(s) 220, 366
BspPI GGATC 2 cut(s) 349, 371
BspTNI GGTCTC 1 cut(s) 460
BsrDI GCAATG 2 cut(s) 173, 266
BsrI ACTGG 1 cut(s) 314
BssMI GATC 2 cut(s) 341, 376
Bst4CI ACNGT 1 cut(s) 59
BstC8I GCNNGC 2 cut(s) 451, 455
BstDEI CTNAG 4 cut(s) 162, 349, 423, 441
BstENI CCTNNNNNAGG 1 cut(s) 384
BstKTI GATC 2 cut(s) 344, 379
BstMAI GTCTC 1 cut(s) 460
BstMBI GATC 2 cut(s) 341, 376
BstMWI GCNNNNNNNGC 1 cut(s) 400
BstV1I GCAGC 1 cut(s) 91
BsuRI GGCC 1 cut(s) 394
BtgZI GCGATG 1 cut(s) 102
BtsIMutI CAGTG 1 cut(s) 372
Cac8I GCNNGC 2 cut(s) 451, 455
CciI TCATGA 2 cut(s) 220, 366
CviAII CATG 2 cut(s) 221, 367
CviJI RGCY 3 cut(s) 353, 394, 457
CviKI_1 RGCY 3 cut(s) 353, 394, 457
DdeI CTNAG 4 cut(s) 162, 349, 423, 441
DpnI GATC 2 cut(s) 343, 378
DpnII GATC 2 cut(s) 341, 376
Eco31I GGTCTC 1 cut(s) 460
EcoNI CCTNNNNNAGG 1 cut(s) 384
EcoRI GAATTC 1 cut(s) 427
FaeI CATG 2 cut(s) 224, 370
FaiI YATR 7 cut(s) 32, 77, 147, 189, 222, 368, 434
FatI CATG 2 cut(s) 220, 366
Fnu4HI GCNGC 1 cut(s) 80
Fsp4HI GCNGC 1 cut(s) 80
GluI GCNGC 1 cut(s) 80
GsuI CTGGAG 1 cut(s) 297
HaeIII GGCC 1 cut(s) 394
Hin1II CATG 2 cut(s) 224, 370
HincII GTYRAC 1 cut(s) 438
HindII GTYRAC 1 cut(s) 438
HinfI GANTC 3 cut(s) 20, 67, 226
HphI GGTGA 1 cut(s) 276
Hpy166II GTNNAC 2 cut(s) 205, 438
Hpy188I TCNGA 2 cut(s) 196, 416
Hpy188III TCNNGA 3 cut(s) 206, 221, 367
Hpy8I GTNNAC 2 cut(s) 205, 438
HpyAV CCTTC 2 cut(s) 95, 367
HpyCH4III ACNGT 1 cut(s) 59
HpyCH4V TGCA 8 cut(s) 17, 53, 79, 92, 154, 271, 410, 449
HpyF10VI GCNNNNNNNGC 1 cut(s) 400
HpyF3I CTNAG 4 cut(s) 162, 349, 423, 441
Hsp92II CATG 2 cut(s) 224, 370
Kzo9I GATC 2 cut(s) 341, 376
LmnI GCTCC 1 cut(s) 214
LpnPI CCDG 4 cut(s) 327, 348, 372, 393
Lsp1109I GCAGC 1 cut(s) 91
LweI GCATC 2 cut(s) 79, 226
MaeIII GTNAC 1 cut(s) 382
MalI GATC 2 cut(s) 343, 378
MboI GATC 2 cut(s) 341, 376
MboII GAAGA 1 cut(s) 110
MfeI CAATTG 1 cut(s) 62
MluCI AATT 7 cut(s) 36, 62, 175, 198, 292, 306, 427
MlyI GAGTC 2 cut(s) 29, 76
MmeI TCCRAC 1 cut(s) 319
MnlI CCTC 4 cut(s) 205, 297, 321, 384
MroXI GAANNNNTTC 1 cut(s) 201
MseI TTAA 1 cut(s) 472
MunI CAATTG 1 cut(s) 62
Mva1269I GAATGC 4 cut(s) 156, 163, 410, 451
MwoI GCNNNNNNNGC 1 cut(s) 400
NdeII GATC 2 cut(s) 341, 376
NlaIII CATG 2 cut(s) 224, 370
PagI TCATGA 2 cut(s) 220, 366
PctI GAATGC 4 cut(s) 156, 163, 410, 451
PdmI GAANNNNTTC 1 cut(s) 201
PfeI GAWTC 1 cut(s) 226
PkrI GCNGC 1 cut(s) 81
PleI GAGTC 2 cut(s) 28, 75
PpsI GAGTC 2 cut(s) 28, 75
SaqAI TTAA 1 cut(s) 472
SatI GCNGC 1 cut(s) 80
Sau3AI GATC 2 cut(s) 341, 376
SchI GAGTC 2 cut(s) 29, 76
SetI ASST 6 cut(s) 106, 259, 289, 337, 355, 472
SfaNI GCATC 2 cut(s) 79, 226
Sse9I AATT 7 cut(s) 36, 62, 175, 198, 292, 306, 427
TaaI ACNGT 1 cut(s) 59
TasI AATT 7 cut(s) 36, 62, 175, 198, 292, 306, 427
TfiI GAWTC 1 cut(s) 226
Tru1I TTAA 1 cut(s) 472
Tru9I TTAA 1 cut(s) 472
TscAI CASTG 1 cut(s) 379
TseI GCWGC 1 cut(s) 79
TspDTI ATGAA 4 cut(s) 111, 156, 255, 383
TspRI CASTG 1 cut(s) 379
XagI CCTNNNNNAGG 1 cut(s) 384
XapI RAATTY 3 cut(s) 292, 306, 427
XmnI GAANNNNTTC 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.